Wall clock time and date at job start Mon Mar 30 2020 02:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38266 * 119.98923 * 2 1 4 4 C 1.38226 * 120.05404 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.98766 * 180.02562 * 4 3 2 6 6 C 1.38217 * 120.02522 * 0.03782 * 4 3 2 7 7 C 1.50698 * 120.01397 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47466 * 269.98647 * 7 6 4 9 9 H 1.07996 * 120.00275 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99809 * 180.02562 * 8 7 6 11 11 N 1.31522 * 119.99792 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00319 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47100 * 90.00384 * 12 10 8 14 14 H 1.48501 * 109.47685 * 210.00002 * 12 10 8 15 15 H 1.48503 * 109.47268 * 330.00687 * 12 10 8 16 16 C 1.38434 * 119.97400 * 359.97438 * 6 4 3 17 17 F 1.35099 * 120.02897 * 180.02562 * 16 6 4 18 18 C 1.38176 * 119.98906 * 180.02562 * 2 1 3 19 19 H 1.09001 * 109.47068 * 269.95866 * 1 2 3 20 20 H 1.09000 * 109.47101 * 29.95781 * 1 2 3 21 21 H 1.09001 * 109.47213 * 149.95428 * 1 2 3 22 22 H 1.08000 * 119.97183 * 359.97438 * 3 2 1 23 23 H 1.09003 * 109.47242 * 270.02011 * 5 4 3 24 24 H 1.09006 * 109.46916 * 30.02009 * 5 4 3 25 25 H 1.08994 * 109.47175 * 150.01685 * 5 4 3 26 26 H 1.09006 * 109.46927 * 29.98811 * 7 6 4 27 27 H 1.09004 * 109.47014 * 149.97835 * 7 6 4 28 28 H 0.97003 * 119.99478 * 179.97438 * 11 10 8 29 29 H 1.07996 * 120.01219 * 0.24814 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5803 1.1991 -0.0005 5 6 4.3321 2.5053 0.0000 6 6 4.2733 0.0032 -0.0019 7 6 5.7803 0.0052 -0.0030 8 6 6.2816 0.0065 -1.4242 9 1 5.5792 0.0055 -2.2446 10 6 7.6369 0.0079 -1.6770 11 7 8.0744 0.0085 -2.9173 12 14 8.8518 0.0089 -0.2581 13 1 9.1752 -1.3910 0.1176 14 1 10.0942 0.7102 -0.6705 15 1 8.2520 0.7080 0.9067 16 6 3.5825 -1.1964 -0.0021 17 9 4.2587 -2.3660 -0.0029 18 6 2.1976 -1.1968 -0.0005 19 1 -0.3633 -0.0007 1.0277 20 1 -0.3633 0.8904 -0.5132 21 1 -0.3634 -0.8896 -0.5145 22 1 1.6574 2.1325 -0.0004 23 1 4.5126 2.8211 -1.0275 24 1 3.7423 3.2637 0.5150 25 1 5.2849 2.3758 0.5131 26 1 6.1428 0.8955 0.5110 27 1 6.1452 -0.8845 0.5103 28 1 9.0280 0.0098 -3.0952 29 1 1.6577 -2.1321 -0.0050 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214155362.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:34 Heat of formation + Delta-G solvation = -59.948232 kcal Electronic energy + Delta-G solvation = -13310.849015 eV Core-core repulsion = 10918.806439 eV Total energy + Delta-G solvation = -2392.042575 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.75423 -40.35206 -35.95214 -34.35640 -32.61971 -30.96229 -28.03652 -27.29660 -24.13531 -22.81260 -21.13047 -19.05488 -17.67698 -17.61255 -16.80187 -16.52841 -15.99260 -14.85078 -14.67890 -14.57604 -14.31037 -14.06807 -13.87260 -13.75586 -13.15680 -12.92440 -12.57637 -12.52038 -12.24188 -12.12792 -11.84887 -11.70059 -11.38086 -10.81342 -9.50004 -9.23736 -8.33040 -6.37610 0.31904 0.39238 1.32742 1.33960 1.45551 2.31865 2.69366 3.00835 3.44705 3.86012 3.93238 4.15680 4.30811 4.42948 4.67430 4.72915 4.79589 4.89660 4.92524 4.94695 5.02506 5.17317 5.31004 5.37737 5.45409 5.53301 5.60779 5.80375 6.11202 6.23234 6.66061 7.25071 8.83718 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.041613 B = 0.009893 C = 0.008972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.704381 B = 2829.517404 C = 3120.099931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.072 4.072 3 C -0.128 4.128 4 C -0.069 4.069 5 C -0.109 4.109 6 C -0.115 4.115 7 C 0.023 3.977 8 C -0.513 4.513 9 H 0.024 0.976 10 C 0.011 3.989 11 N -0.947 5.947 12 Si 0.946 3.054 13 H -0.272 1.272 14 H -0.276 1.276 15 H -0.243 1.243 16 C 0.067 3.933 17 F -0.157 7.157 18 C -0.166 4.166 19 H 0.088 0.912 20 H 0.083 0.917 21 H 0.074 0.926 22 H 0.159 0.841 23 H 0.063 0.937 24 H 0.096 0.904 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.014 0.986 28 H 0.268 0.732 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.428 3.176 9.150 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.072 4.072 3 C -0.146 4.146 4 C -0.069 4.069 5 C -0.165 4.165 6 C -0.116 4.116 7 C -0.014 4.014 8 C -0.551 4.551 9 H 0.043 0.957 10 C -0.186 4.186 11 N -0.587 5.587 12 Si 0.769 3.231 13 H -0.197 1.197 14 H -0.201 1.201 15 H -0.166 1.166 16 C 0.048 3.952 17 F -0.136 7.136 18 C -0.185 4.185 19 H 0.106 0.894 20 H 0.102 0.898 21 H 0.093 0.907 22 H 0.176 0.824 23 H 0.082 0.918 24 H 0.115 0.885 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.077 0.923 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.254 3.136 9.042 16.348 hybrid contribution 1.323 -0.703 -0.133 1.504 sum -11.931 2.433 8.909 15.088 Atomic orbital electron populations 1.20809 0.87495 1.04029 1.03690 1.20073 0.98138 0.91253 0.97760 1.21271 0.92284 0.99231 1.01815 1.19923 0.94593 0.94442 0.97924 1.20810 1.00029 0.93158 1.02518 1.20157 0.97242 0.92677 1.01552 1.18584 0.89283 0.97477 0.96098 1.21001 0.92017 1.50839 0.91220 0.95733 1.25920 1.00311 0.93909 0.98458 1.70051 1.15247 1.52236 1.21210 0.85723 0.78199 0.79185 0.80029 1.19697 1.20146 1.16616 1.17992 0.91117 0.80705 1.05411 1.91396 1.81219 1.46715 1.94230 1.21158 0.90620 1.00824 1.05885 0.89383 0.89775 0.90736 0.82379 0.91825 0.88497 0.92104 0.93446 0.96794 0.92276 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 10.01 71.23 0.71 -1.07 15 2 C -0.07 -1.97 5.88 -19.87 -0.12 -2.09 15 3 C -0.13 -3.69 9.35 22.27 0.21 -3.48 15 4 C -0.07 -2.52 5.88 -19.87 -0.12 -2.64 15 5 C -0.11 -3.56 9.60 71.24 0.68 -2.88 15 6 C -0.12 -5.15 5.08 -19.82 -0.10 -5.25 15 7 C 0.02 1.14 3.59 29.10 0.10 1.24 15 8 C -0.51 -30.90 9.65 25.60 0.25 -30.65 15 9 H 0.02 1.65 7.98 -2.91 -0.02 1.63 15 10 C 0.01 0.67 5.47 84.65 0.46 1.14 15 11 N -0.95 -60.58 13.96 21.45 0.30 -60.28 15 12 Si 0.95 45.21 27.47 68.60 1.88 47.09 15 13 H -0.27 -12.76 7.11 99.48 0.71 -12.06 15 14 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 15 H -0.24 -10.64 6.54 99.48 0.65 -9.99 15 16 C 0.07 2.84 7.24 22.38 0.16 3.00 15 17 F -0.16 -7.27 16.48 44.97 0.74 -6.53 15 18 C -0.17 -5.48 9.68 22.31 0.22 -5.26 15 19 H 0.09 1.22 8.14 -2.39 -0.02 1.20 15 20 H 0.08 1.18 8.08 -2.39 -0.02 1.16 15 21 H 0.07 1.17 8.09 -2.39 -0.02 1.15 15 22 H 0.16 3.29 8.06 -2.91 -0.02 3.27 15 23 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 24 H 0.10 2.30 8.09 -2.38 -0.02 2.28 15 25 H 0.06 2.14 5.95 -2.39 -0.01 2.13 15 26 H 0.05 2.26 5.01 -2.38 -0.01 2.25 15 27 H 0.01 0.72 7.07 -2.38 -0.02 0.70 15 28 H 0.27 15.91 8.31 -92.71 -0.77 15.14 15 29 H 0.15 4.03 8.06 -2.91 -0.02 4.01 15 Total: -1.00 -71.03 251.06 6.47 -64.55 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: 1.08 Total: 3.10 kcal Atomic # 6 Polarization: -50.40 SS G_CDS: 2.46 Total: -47.94 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: 0.30 Total: -60.28 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.74 Total: -6.53 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.09 kcal Total: -71.03 6.47 -64.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214155362.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.605 kcal (2) G-P(sol) polarization free energy of solvation -71.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds