Wall clock time and date at job start Mon Mar 30 2020 02:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38265 * 119.97476 * 2 1 4 4 C 1.38177 * 120.02212 * 179.72417 * 3 2 1 5 5 C 1.50704 * 120.01125 * 180.27328 * 4 3 2 6 6 C 1.38487 * 119.97478 * 0.55159 * 4 3 2 7 7 F 1.35104 * 120.02441 * 179.74450 * 6 4 3 8 8 C 1.38436 * 119.94649 * 359.47260 * 6 4 3 9 9 C 1.50699 * 120.00926 * 180.27518 * 8 6 4 10 10 C 1.50700 * 109.47407 * 84.99722 * 9 8 6 11 11 H 1.07998 * 119.99595 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00248 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00124 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99950 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47215 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47159 * 120.00545 * 14 12 10 17 17 H 1.48501 * 109.47007 * 239.99928 * 14 12 10 18 18 C 1.38216 * 119.97572 * 0.24882 * 8 6 4 19 19 H 1.09008 * 109.47061 * 269.97643 * 1 2 3 20 20 H 1.09000 * 109.47071 * 29.97526 * 1 2 3 21 21 H 1.08999 * 109.47755 * 149.97790 * 1 2 3 22 22 H 1.07994 * 119.98907 * 359.97438 * 3 2 1 23 23 H 1.09005 * 109.46947 * 270.27915 * 5 4 3 24 24 H 1.08999 * 109.47162 * 30.27930 * 5 4 3 25 25 H 1.09004 * 109.47018 * 150.28247 * 5 4 3 26 26 H 1.09002 * 109.46970 * 204.99521 * 9 8 6 27 27 H 1.09002 * 109.47526 * 324.99776 * 9 8 6 28 28 H 0.96995 * 120.00064 * 179.97438 * 13 12 10 29 29 H 1.08001 * 119.98647 * 179.97438 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 0.0058 5 6 4.3322 2.5045 0.0120 6 6 4.2725 -0.0002 0.0000 7 9 5.6235 -0.0002 0.0004 8 6 3.5797 -1.1987 -0.0005 9 6 4.3323 -2.5043 -0.0005 10 6 4.6900 -2.8780 1.4149 11 1 4.4016 -2.2342 2.2326 12 6 5.3855 -4.0417 1.6659 13 7 5.7371 -4.8255 0.6700 14 14 5.8283 -4.5052 3.4205 15 1 5.3212 -3.4644 4.3504 16 1 5.2109 -5.8130 3.7578 17 1 7.3043 -4.6071 3.5481 18 6 2.1975 -1.1974 -0.0004 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3634 -0.8897 -0.5141 22 1 1.6572 2.1326 -0.0004 23 1 4.5136 2.8242 -1.0142 24 1 3.7427 3.2613 0.5295 25 1 5.2848 2.3723 0.5251 26 1 3.7069 -3.2841 -0.4352 27 1 5.2433 -2.3986 -0.5897 28 1 6.2267 -5.6439 0.8466 29 1 1.6568 -2.1324 -0.0013 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214155448.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:36 Heat of formation + Delta-G solvation = -65.933542 kcal Electronic energy + Delta-G solvation = -13195.506603 eV Core-core repulsion = 10803.204485 eV Total energy + Delta-G solvation = -2392.302118 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.68343 -40.20711 -35.78850 -34.17872 -33.57716 -29.59792 -27.98379 -27.23332 -25.43657 -21.86689 -21.46129 -18.63276 -18.26929 -17.57199 -16.65453 -16.49687 -15.31361 -14.81712 -14.58864 -14.39831 -14.30522 -14.03794 -13.88127 -13.68498 -13.26685 -13.02209 -12.80879 -12.47979 -12.36939 -12.20098 -12.02618 -11.51038 -11.37207 -10.66937 -9.52260 -9.21844 -8.26089 -6.40219 0.31012 0.43047 1.35161 1.36423 1.50046 2.35127 2.73288 3.04455 3.53040 3.84719 3.95854 4.06475 4.37890 4.42221 4.67415 4.77552 4.79974 4.90184 4.93040 5.05970 5.16062 5.19434 5.27174 5.45143 5.46715 5.62124 5.67275 5.78271 6.04510 6.18595 6.70599 7.28282 8.84181 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.033693 B = 0.009574 C = 0.008411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.845642 B = 2923.803107 C = 3328.132312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.088 4.088 3 C -0.110 4.110 4 C -0.119 4.119 5 C -0.107 4.107 6 C 0.048 3.952 7 F -0.157 7.157 8 C -0.098 4.098 9 C 0.060 3.940 10 C -0.530 4.530 11 H 0.050 0.950 12 C 0.004 3.996 13 N -0.930 5.930 14 Si 0.970 3.030 15 H -0.266 1.266 16 H -0.269 1.269 17 H -0.275 1.275 18 C -0.120 4.120 19 H 0.080 0.920 20 H 0.091 0.909 21 H 0.069 0.931 22 H 0.168 0.832 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.011 0.989 27 H -0.005 1.005 28 H 0.267 0.733 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.206 12.893 -0.553 15.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.088 4.088 3 C -0.128 4.128 4 C -0.120 4.120 5 C -0.163 4.163 6 C 0.029 3.971 7 F -0.135 7.135 8 C -0.099 4.099 9 C 0.023 3.977 10 C -0.568 4.568 11 H 0.069 0.931 12 C -0.194 4.194 13 N -0.569 5.569 14 Si 0.793 3.207 15 H -0.190 1.190 16 H -0.195 1.195 17 H -0.201 1.201 18 C -0.138 4.138 19 H 0.099 0.901 20 H 0.109 0.891 21 H 0.088 0.912 22 H 0.186 0.814 23 H 0.102 0.898 24 H 0.118 0.882 25 H 0.073 0.927 26 H 0.030 0.970 27 H 0.013 0.987 28 H 0.076 0.924 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.070 12.738 -0.598 15.649 hybrid contribution 1.108 -1.012 0.573 1.606 sum -7.962 11.726 -0.025 14.174 Atomic orbital electron populations 1.20807 0.87987 1.04016 1.03332 1.20324 0.98193 0.91933 0.98387 1.21056 0.91487 0.99010 1.01239 1.20266 0.95536 0.93925 1.02240 1.20747 0.99598 0.92453 1.03495 1.17842 0.76517 0.94810 1.07963 1.91373 1.30424 1.97414 1.94333 1.20530 0.95716 0.95036 0.98603 1.17985 0.93605 0.89414 0.96707 1.21319 1.36371 1.06678 0.92445 0.93121 1.25966 0.95224 0.96007 1.02181 1.70086 1.39816 1.13741 1.33289 0.85333 0.78157 0.78441 0.78755 1.19009 1.19456 1.20090 1.20927 0.91746 0.99199 1.01891 0.90134 0.89068 0.91229 0.81439 0.89778 0.88206 0.92727 0.97025 0.98657 0.92387 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 10.01 71.23 0.71 -1.39 15 2 C -0.09 -2.63 5.88 -19.86 -0.12 -2.75 15 3 C -0.11 -3.03 9.36 22.26 0.21 -2.82 15 4 C -0.12 -3.96 5.89 -19.82 -0.12 -4.07 15 5 C -0.11 -2.66 9.83 71.24 0.70 -1.96 15 6 C 0.05 2.11 7.18 22.38 0.16 2.27 15 7 F -0.16 -7.60 15.78 44.97 0.71 -6.89 15 8 C -0.10 -4.68 5.08 -19.82 -0.10 -4.78 15 9 C 0.06 3.44 4.88 29.10 0.14 3.59 15 10 C -0.53 -32.16 9.09 25.60 0.23 -31.93 15 11 H 0.05 3.05 7.74 -2.91 -0.02 3.03 15 12 C 0.00 0.26 5.46 84.65 0.46 0.73 15 13 N -0.93 -58.06 13.29 21.45 0.28 -57.77 15 14 Si 0.97 45.91 29.54 68.60 2.03 47.94 15 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 18 C -0.12 -4.69 9.33 22.26 0.21 -4.49 15 19 H 0.08 1.46 8.14 -2.38 -0.02 1.44 15 20 H 0.09 1.33 8.08 -2.39 -0.02 1.31 15 21 H 0.07 1.36 8.08 -2.39 -0.02 1.34 15 22 H 0.17 3.04 8.06 -2.91 -0.02 3.02 15 23 H 0.08 1.84 8.14 -2.38 -0.02 1.82 15 24 H 0.10 1.81 8.09 -2.39 -0.02 1.79 15 25 H 0.05 1.51 7.64 -2.38 -0.02 1.49 15 26 H 0.01 0.68 8.05 -2.39 -0.02 0.66 15 27 H 0.00 -0.31 7.79 -2.39 -0.02 -0.32 15 28 H 0.27 15.48 8.31 -92.71 -0.77 14.71 15 29 H 0.12 4.73 8.06 -2.91 -0.02 4.71 15 Total: -1.00 -70.84 258.11 6.64 -64.20 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: 1.13 Total: 0.13 kcal Atomic # 6 Polarization: -50.10 SS G_CDS: 2.49 Total: -47.61 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.28 Total: -57.77 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 0.71 Total: -6.89 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -70.84 6.64 -64.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214155448.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.732 kcal (2) G-P(sol) polarization free energy of solvation -70.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds