Wall clock time and date at job start Mon Mar 30 2020 02:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38222 * 120.01578 * 2 1 4 4 C 1.38227 * 120.02808 * 180.02562 * 3 2 1 5 5 C 1.38262 * 120.05023 * 359.97291 * 4 3 2 6 6 C 1.50701 * 119.98584 * 180.02562 * 5 4 3 7 7 C 1.38172 * 120.02687 * 0.02562 * 5 4 3 8 8 C 1.50700 * 120.01431 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.46869 * 89.99990 * 8 7 5 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 C 1.38439 * 120.01498 * 180.26938 * 2 1 3 18 18 F 1.35106 * 120.02340 * 0.02562 * 17 2 1 19 19 H 1.08998 * 109.47529 * 90.00101 * 1 2 3 20 20 H 1.08999 * 109.47381 * 210.00275 * 1 2 3 21 21 H 1.08999 * 109.47110 * 330.00236 * 1 2 3 22 22 H 1.07994 * 119.98382 * 0.03936 * 3 2 1 23 23 H 1.07998 * 119.97293 * 179.97438 * 4 3 2 24 24 H 1.09003 * 109.46845 * 269.97593 * 6 5 4 25 25 H 1.08996 * 109.47322 * 29.97976 * 6 5 4 26 26 H 1.09003 * 109.47270 * 149.98236 * 6 5 4 27 27 H 1.09004 * 109.47210 * 330.00283 * 8 7 5 28 28 H 1.08994 * 109.47551 * 209.99936 * 8 7 5 29 29 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2732 0.0005 -0.0005 6 6 5.7803 0.0025 -0.0005 7 6 3.5842 -1.1972 -0.0005 8 6 4.3395 -2.5013 0.0001 9 6 4.5906 -2.9356 1.4212 10 1 4.2382 -2.3282 2.2418 11 6 5.2649 -4.1115 1.6738 12 7 5.6936 -4.8513 0.6745 13 14 5.5694 -4.6537 3.4352 14 1 4.4361 -5.4946 3.8972 15 1 6.8277 -5.4395 3.5006 16 1 5.6866 -3.4580 4.3080 17 6 2.1994 -1.1987 -0.0056 18 9 1.5247 -2.3692 -0.0117 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3634 -0.8899 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.6584 2.1321 0.0006 23 1 4.1200 2.1328 -0.0010 24 1 6.1435 0.0026 -1.0282 25 1 6.1424 0.8932 0.5130 26 1 6.1448 -0.8868 0.5136 27 1 5.2920 -2.3698 -0.5133 28 1 3.7517 -3.2618 -0.5137 29 1 6.1683 -5.6784 0.8522 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214155536.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:37 Heat of formation + Delta-G solvation = -63.640197 kcal Electronic energy + Delta-G solvation = -13374.071795 eV Core-core repulsion = 10981.869124 eV Total energy + Delta-G solvation = -2392.202671 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.70544 -40.23633 -35.91032 -34.45017 -32.47351 -30.14034 -29.08067 -25.88217 -25.20567 -22.63567 -21.22231 -18.58007 -17.82662 -17.54780 -16.71155 -16.51941 -15.84110 -14.72460 -14.63030 -14.37786 -14.20136 -13.98926 -13.83438 -13.65380 -13.12521 -12.91490 -12.67862 -12.51853 -12.36506 -12.20210 -11.98135 -11.55866 -11.28487 -10.63553 -9.40092 -9.26208 -8.23110 -6.36470 0.34257 0.46231 1.36193 1.37995 1.49175 2.36608 2.76686 3.07329 3.51868 3.90190 3.98545 4.16428 4.35449 4.46632 4.74969 4.78948 4.80818 4.87454 4.91676 5.10212 5.19476 5.20340 5.37465 5.46074 5.52727 5.58725 5.69714 5.89358 6.08299 6.22250 6.74176 7.31405 8.86551 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.034570 B = 0.010413 C = 0.009102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.750571 B = 2688.189188 C = 3075.591013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.133 4.133 3 C -0.104 4.104 4 C -0.120 4.120 5 C -0.083 4.083 6 C -0.111 4.111 7 C -0.109 4.109 8 C 0.062 3.938 9 C -0.524 4.524 10 H 0.049 0.951 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.965 3.035 14 H -0.276 1.276 15 H -0.275 1.275 16 H -0.263 1.263 17 C 0.054 3.946 18 F -0.158 7.158 19 H 0.081 0.919 20 H 0.052 0.948 21 H 0.098 0.902 22 H 0.169 0.831 23 H 0.161 0.839 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.051 0.949 27 H 0.020 0.980 28 H -0.012 1.012 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.617 13.327 -0.670 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.134 4.134 3 C -0.121 4.121 4 C -0.138 4.138 5 C -0.083 4.083 6 C -0.167 4.167 7 C -0.109 4.109 8 C 0.026 3.974 9 C -0.562 4.562 10 H 0.067 0.933 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.789 3.211 14 H -0.201 1.201 15 H -0.200 1.200 16 H -0.187 1.187 17 C 0.036 3.964 18 F -0.137 7.137 19 H 0.100 0.900 20 H 0.071 0.929 21 H 0.117 0.883 22 H 0.187 0.813 23 H 0.179 0.821 24 H 0.092 0.908 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.007 0.993 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.550 13.121 -0.713 14.264 hybrid contribution 0.188 -1.414 0.602 1.548 sum -5.362 11.707 -0.111 12.877 Atomic orbital electron populations 1.20720 0.88534 1.03627 1.03321 1.20249 0.98250 0.91289 1.03592 1.21192 0.93961 0.97193 0.99772 1.21405 0.94568 0.97509 1.00279 1.19914 0.97271 0.91708 0.99434 1.20789 0.90268 1.03191 1.02477 1.20465 0.92559 0.97967 0.99955 1.17967 0.94006 0.88800 0.96671 1.21234 1.36240 1.06713 0.91979 0.93269 1.25915 0.95158 0.96268 1.01885 1.70082 1.39082 1.14616 1.33080 0.85452 0.77861 0.78581 0.79238 1.20120 1.19968 1.18713 1.17902 0.89916 0.81465 1.07163 1.91369 1.80211 1.47800 1.94303 0.89997 0.92916 0.88280 0.81321 0.82127 0.90771 0.89099 0.92994 0.96182 0.99333 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.65 9.83 71.23 0.70 -1.95 15 2 C -0.13 -4.40 5.89 -19.82 -0.12 -4.52 15 3 C -0.10 -2.77 9.70 22.26 0.22 -2.56 15 4 C -0.12 -3.45 9.70 22.27 0.22 -3.23 15 5 C -0.08 -3.17 5.88 -19.87 -0.12 -3.29 15 6 C -0.11 -3.87 9.19 71.24 0.65 -3.21 15 7 C -0.11 -5.11 5.08 -19.82 -0.10 -5.21 15 8 C 0.06 3.53 4.25 29.10 0.12 3.65 15 9 C -0.52 -31.16 8.69 25.60 0.22 -30.94 15 10 H 0.05 2.91 7.74 -2.91 -0.02 2.89 15 11 C 0.01 0.35 5.46 84.66 0.46 0.81 15 12 N -0.93 -57.44 13.29 21.45 0.28 -57.16 15 13 Si 0.96 45.50 29.54 68.60 2.03 47.52 15 14 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 15 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 16 H -0.26 -11.87 7.11 99.48 0.71 -11.16 15 17 C 0.05 2.40 7.18 22.38 0.16 2.56 15 18 F -0.16 -7.65 15.69 44.97 0.71 -6.95 15 19 H 0.08 1.82 8.14 -2.39 -0.02 1.80 15 20 H 0.05 1.47 7.65 -2.39 -0.02 1.45 15 21 H 0.10 1.81 8.09 -2.39 -0.02 1.79 15 22 H 0.17 2.92 8.06 -2.91 -0.02 2.90 15 23 H 0.16 3.26 8.06 -2.91 -0.02 3.24 15 24 H 0.07 2.36 8.14 -2.39 -0.02 2.34 15 25 H 0.09 2.47 8.08 -2.39 -0.02 2.45 15 26 H 0.05 2.22 6.36 -2.39 -0.02 2.21 15 27 H 0.02 1.16 6.70 -2.38 -0.02 1.14 15 28 H -0.01 -0.73 7.63 -2.39 -0.02 -0.75 15 29 H 0.27 15.36 8.31 -92.70 -0.77 14.59 15 Total: -1.00 -69.89 253.64 6.57 -63.32 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: 1.14 Total: 1.15 kcal Atomic # 6 Polarization: -50.31 SS G_CDS: 2.42 Total: -47.89 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.28 Total: -57.16 kcal Atomic # 9 Polarization: -7.65 SS G_CDS: 0.71 Total: -6.95 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -69.89 6.57 -63.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214155536.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.324 kcal (2) G-P(sol) polarization free energy of solvation -69.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds