Wall clock time and date at job start Mon Mar 30 2020 02:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38714 * 119.77274 * 2 1 4 4 C 1.38491 * 120.54186 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.95931 * 180.02562 * 4 3 2 6 6 C 1.38027 * 120.08702 * 359.78542 * 4 3 2 7 7 F 1.35098 * 120.22116 * 180.23257 * 6 4 3 8 8 C 1.40990 * 119.54873 * 0.46441 * 6 4 3 9 9 C 1.41292 * 120.26338 * 179.79226 * 8 6 4 10 10 H 1.07998 * 120.00429 * 143.33822 * 9 8 6 11 11 C 1.39940 * 119.99851 * 323.06118 * 9 8 6 12 12 N 1.30843 * 120.00178 * 340.77910 * 11 9 8 13 13 Si 1.86801 * 119.99855 * 160.77819 * 11 9 8 14 14 H 1.48504 * 109.47138 * 90.00135 * 13 11 9 15 15 H 1.48503 * 109.47078 * 210.00034 * 13 11 9 16 16 H 1.48502 * 109.46927 * 329.99888 * 13 11 9 17 17 C 1.36543 * 119.77432 * 179.97438 * 2 1 3 18 18 C 1.50700 * 120.05430 * 0.02562 * 17 2 1 19 19 H 1.08997 * 109.47547 * 270.02432 * 1 2 3 20 20 H 1.09007 * 109.46710 * 30.02706 * 1 2 3 21 21 H 1.08998 * 109.47301 * 150.02186 * 1 2 3 22 22 H 1.07997 * 119.73313 * 359.97438 * 3 2 1 23 23 H 1.09003 * 109.47321 * 90.00040 * 5 4 3 24 24 H 1.09002 * 109.47827 * 210.00072 * 5 4 3 25 25 H 1.08999 * 109.47055 * 330.00684 * 5 4 3 26 26 H 0.96994 * 120.00471 * 179.97438 * 12 11 9 27 27 H 1.08998 * 109.46995 * 270.02621 * 18 17 2 28 28 H 1.09004 * 109.47289 * 30.01772 * 18 17 2 29 29 H 1.08995 * 109.47503 * 150.01847 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2040 0.0000 4 6 3.5806 1.2226 0.0005 5 6 4.3155 2.5382 0.0011 6 6 4.2885 0.0377 0.0055 7 9 5.6394 0.0527 0.0108 8 6 3.5922 -1.1882 0.0002 9 6 4.3017 -2.4101 0.0008 10 1 3.9218 -3.2550 0.5559 11 6 5.4938 -2.5273 -0.7228 12 7 5.7644 -1.6774 -1.6801 13 14 6.6989 -3.8971 -0.3217 14 1 6.3763 -5.0950 -1.1381 15 1 8.0803 -3.4466 -0.6283 16 1 6.5981 -4.2387 1.1199 17 6 2.1850 -1.1852 0.0005 18 6 1.4276 -2.4880 0.0005 19 1 -0.3634 0.0004 1.0276 20 1 -0.3633 0.8898 -0.5143 21 1 -0.3634 -0.8902 -0.5135 22 1 1.6478 2.1346 -0.0004 23 1 4.4924 2.8552 1.0289 24 1 5.2699 2.4216 -0.5124 25 1 3.7159 3.2896 -0.5127 26 1 6.5908 -1.7584 -2.1813 27 1 1.2442 -2.8016 1.0282 28 1 0.4759 -2.3551 -0.5140 29 1 2.0147 -3.2496 -0.5126 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214156877.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:39 Heat of formation + Delta-G solvation = -60.607226 kcal Electronic energy + Delta-G solvation = -13710.194591 eV Core-core repulsion = 11318.123440 eV Total energy + Delta-G solvation = -2392.071151 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.88663 -39.77708 -35.73842 -34.59841 -32.55717 -29.89339 -28.12022 -26.75140 -25.23623 -22.47723 -20.61043 -18.94757 -17.28300 -17.11643 -16.72588 -15.82739 -15.25654 -14.67777 -14.44746 -14.26458 -13.93252 -13.74615 -13.45537 -13.35419 -13.29751 -13.03121 -12.78316 -12.40506 -12.34685 -12.18854 -11.64013 -11.48523 -11.12459 -10.82583 -9.13268 -8.73595 -8.64176 -6.36111 0.86469 0.94807 1.34746 1.44188 1.49738 2.20900 2.72174 3.46678 4.14777 4.21772 4.32338 4.55512 4.63693 4.70384 4.80977 4.90699 4.92814 5.04706 5.08047 5.10145 5.20251 5.28372 5.36411 5.56152 5.79962 5.83344 6.06468 6.18876 6.36991 6.55008 6.90899 7.02643 8.37374 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032429 B = 0.013908 C = 0.010232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.213720 B = 2012.744957 C = 2735.945056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.082 4.082 3 C -0.205 4.205 4 C -0.122 4.122 5 C -0.096 4.096 6 C -0.010 4.010 7 F -0.160 7.160 8 C 0.055 3.945 9 C -0.500 4.500 10 H 0.082 0.918 11 C 0.036 3.964 12 N -0.822 5.822 13 Si 0.973 3.027 14 H -0.257 1.257 15 H -0.274 1.274 16 H -0.259 1.259 17 C -0.183 4.183 18 C -0.083 4.083 19 H 0.074 0.926 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.130 0.870 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.083 0.917 26 H 0.284 0.716 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 1.874 2.129 5.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.082 4.082 3 C -0.224 4.224 4 C -0.123 4.123 5 C -0.153 4.153 6 C -0.030 4.030 7 F -0.138 7.138 8 C 0.053 3.947 9 C -0.530 4.530 10 H 0.100 0.900 11 C -0.180 4.180 12 N -0.447 5.447 13 Si 0.794 3.206 14 H -0.182 1.182 15 H -0.198 1.198 16 H -0.183 1.183 17 C -0.184 4.184 18 C -0.139 4.139 19 H 0.093 0.907 20 H 0.090 0.910 21 H 0.090 0.910 22 H 0.148 0.852 23 H 0.091 0.909 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.037 1.932 1.936 5.732 hybrid contribution 1.300 -0.510 -0.088 1.399 sum -3.737 1.422 1.848 4.405 Atomic orbital electron populations 1.20780 0.89656 1.02855 1.02451 1.19574 0.96971 0.92230 0.99409 1.20436 0.91640 0.97602 1.12694 1.19975 0.95261 0.93964 1.03080 1.20566 0.99101 0.93451 1.02135 1.18119 0.76188 0.94714 1.14023 1.91227 1.30802 1.97328 1.94490 1.17887 0.92562 0.92442 0.91857 1.19502 1.06636 0.98238 1.28591 0.89963 1.26626 0.99299 0.99352 0.92700 1.69844 1.24168 1.35649 1.15081 0.85333 0.77111 0.78147 0.79962 1.18171 1.19845 1.18323 1.19753 0.92291 0.95958 1.10417 1.20485 0.98633 0.93883 1.00907 0.90703 0.91034 0.91033 0.85183 0.90922 0.93753 0.89814 0.90604 0.92387 0.90703 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.05 9.57 71.24 0.68 -2.37 15 2 C -0.08 -3.41 5.84 -20.15 -0.12 -3.52 15 3 C -0.20 -8.62 9.35 22.44 0.21 -8.41 15 4 C -0.12 -5.74 5.88 -19.86 -0.12 -5.86 15 5 C -0.10 -3.66 9.83 71.23 0.70 -2.96 15 6 C -0.01 -0.56 6.63 22.89 0.15 -0.41 15 7 F -0.16 -9.27 13.50 44.97 0.61 -8.66 15 8 C 0.06 3.07 5.40 -21.25 -0.11 2.95 15 9 C -0.50 -27.83 7.72 23.43 0.18 -27.64 15 10 H 0.08 4.36 7.37 -2.91 -0.02 4.34 15 11 C 0.04 1.91 4.53 85.25 0.39 2.30 15 12 N -0.82 -46.60 11.10 21.83 0.24 -46.36 15 13 Si 0.97 41.05 29.60 68.60 2.03 43.08 15 14 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 15 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 16 H -0.26 -10.70 7.11 99.48 0.71 -10.00 15 17 C -0.18 -8.71 5.90 -19.65 -0.12 -8.82 15 18 C -0.08 -3.28 9.02 71.24 0.64 -2.64 15 19 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 20 H 0.07 1.87 8.08 -2.38 -0.02 1.85 15 21 H 0.07 2.01 5.89 -2.39 -0.01 2.00 15 22 H 0.13 4.51 8.06 -2.91 -0.02 4.49 15 23 H 0.07 2.49 8.14 -2.39 -0.02 2.47 15 24 H 0.04 1.79 7.64 -2.39 -0.02 1.77 15 25 H 0.08 2.65 8.09 -2.39 -0.02 2.63 15 26 H 0.28 14.82 8.30 -92.71 -0.77 14.05 15 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 28 H 0.07 2.48 5.89 -2.38 -0.01 2.47 15 29 H 0.05 1.98 6.96 -2.39 -0.02 1.97 15 Total: -1.00 -63.72 245.89 6.52 -57.21 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.15 Total: 12.11 kcal Atomic # 6 Polarization: -59.87 SS G_CDS: 2.49 Total: -57.38 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.24 Total: -46.36 kcal Atomic # 9 Polarization: -9.27 SS G_CDS: 0.61 Total: -8.66 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -63.72 6.52 -57.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214156877.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.401 kcal (2) G-P(sol) polarization free energy of solvation -63.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds