Wall clock time and date at job start Mon Mar 30 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38622 * 119.76559 * 2 1 4 4 C 1.37605 * 120.27664 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.09881 * 179.97438 * 4 3 2 6 6 C 1.40746 * 119.79647 * 359.97438 * 4 3 2 7 7 C 1.41395 * 120.23335 * 179.97438 * 6 4 3 8 8 H 1.07999 * 119.99899 * 232.14158 * 7 6 4 9 9 C 1.39935 * 120.00104 * 52.12764 * 7 6 4 10 10 N 1.30824 * 120.00196 * 203.67408 * 9 7 6 11 11 Si 1.86802 * 119.99993 * 23.67847 * 9 7 6 12 12 H 1.48501 * 109.47361 * 86.02148 * 11 9 7 13 13 H 1.48503 * 109.47058 * 206.02395 * 11 9 7 14 14 H 1.48504 * 109.46942 * 326.01903 * 11 9 7 15 15 C 1.40659 * 119.53504 * 359.97438 * 6 4 3 16 16 C 1.50701 * 120.13513 * 180.02562 * 15 6 4 17 17 C 1.37862 * 119.72222 * 0.28324 * 15 6 4 18 18 F 1.35099 * 119.89954 * 179.72040 * 17 15 6 19 19 H 1.09000 * 109.46965 * 89.99841 * 1 2 3 20 20 H 1.09001 * 109.47075 * 210.00279 * 1 2 3 21 21 H 1.09004 * 109.46824 * 330.00162 * 1 2 3 22 22 H 1.08007 * 119.85573 * 359.97438 * 3 2 1 23 23 H 1.09003 * 109.47567 * 263.99453 * 5 4 3 24 24 H 1.08998 * 109.47666 * 23.99745 * 5 4 3 25 25 H 1.09005 * 109.46970 * 143.99729 * 5 4 3 26 26 H 0.97003 * 120.00385 * 180.02562 * 10 9 7 27 27 H 1.08997 * 109.46829 * 90.00608 * 16 15 6 28 28 H 1.09001 * 109.46921 * 209.99788 * 16 15 6 29 29 H 1.08995 * 109.47703 * 330.00316 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2033 0.0000 4 6 3.5712 1.2156 -0.0005 5 6 4.3153 2.5261 -0.0011 6 6 4.2815 0.0005 -0.0005 7 6 5.6954 0.0023 -0.0016 8 1 6.2356 -0.5713 -0.7402 9 6 6.3949 0.7476 0.9541 10 7 7.6199 1.1375 0.7114 11 14 5.5795 1.1858 2.5767 12 1 5.7706 0.0743 3.5428 13 1 6.1922 2.4247 3.1199 14 1 4.1275 1.4068 2.3572 15 6 3.5748 -1.2157 0.0006 16 6 4.3216 -2.5246 0.0012 17 6 2.1962 -1.2052 -0.0043 18 9 1.5139 -2.3713 -0.0090 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.6490 2.1351 -0.0004 23 1 4.5878 2.7888 -1.0233 24 1 3.6785 3.3057 0.4169 25 1 5.2179 2.4316 0.6027 26 1 8.1049 1.6538 1.3740 27 1 4.5020 -2.8395 1.0290 28 1 3.7284 -3.2816 -0.5119 29 1 5.2745 -2.3996 -0.5130 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214156960.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:51 Heat of formation + Delta-G solvation = -42.825291 kcal Electronic energy + Delta-G solvation = -13719.704523 eV Core-core repulsion = 11328.404454 eV Total energy + Delta-G solvation = -2391.300069 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.96184 -38.29363 -34.01227 -32.48438 -31.76068 -27.81074 -27.02117 -25.52413 -23.40500 -19.88139 -19.63304 -17.79349 -15.94857 -15.58306 -14.82949 -14.58047 -13.57422 -13.19389 -12.86973 -12.67935 -12.54556 -12.49187 -12.28272 -11.99072 -11.78610 -11.46248 -11.13660 -10.86424 -10.46356 -10.16313 -10.02525 -9.99069 -9.59709 -8.94461 -7.49216 -7.19788 -6.81040 -4.44389 2.33550 2.40548 3.09192 3.19124 3.29332 4.02627 4.37586 5.04175 5.34966 5.70199 5.71838 5.96407 6.09810 6.12883 6.23156 6.31810 6.49582 6.53811 6.56276 6.62888 6.70115 6.80982 6.96376 7.26855 7.35797 7.41463 7.45137 7.87176 8.02386 8.40338 8.61405 8.85194 10.20449 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.035464 B = 0.013837 C = 0.011694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.347172 B = 2023.096289 C = 2393.805925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.215 4.215 3 C -0.079 4.079 4 C -0.155 4.155 5 C -0.094 4.094 6 C 0.114 3.886 7 C -0.486 4.486 8 H 0.095 0.905 9 C 0.102 3.898 10 N -0.818 5.818 11 Si 0.870 3.130 12 H -0.274 1.274 13 H -0.279 1.279 14 H -0.234 1.234 15 C -0.190 4.190 16 C -0.086 4.086 17 C 0.104 3.896 18 F -0.159 7.159 19 H 0.052 0.948 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.105 0.895 23 H 0.058 0.942 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.281 0.719 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 0.289 0.830 6.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.216 4.216 3 C -0.098 4.098 4 C -0.156 4.156 5 C -0.151 4.151 6 C 0.111 3.889 7 C -0.516 4.516 8 H 0.113 0.887 9 C -0.114 4.114 10 N -0.444 5.444 11 Si 0.694 3.306 12 H -0.200 1.200 13 H -0.204 1.204 14 H -0.157 1.157 15 C -0.192 4.192 16 C -0.143 4.143 17 C 0.086 3.914 18 F -0.138 7.138 19 H 0.071 0.929 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.123 0.877 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.566 0.362 0.873 6.634 hybrid contribution -0.292 0.038 0.784 0.837 sum -6.858 0.401 1.657 7.066 Atomic orbital electron populations 1.20401 0.92299 1.01239 1.00735 1.19292 0.95051 0.91970 1.15304 1.20313 0.93518 0.95450 1.00473 1.20160 0.92664 0.95475 1.07286 1.20662 0.99345 0.93432 1.01650 1.17334 0.93947 0.88709 0.88866 1.18959 0.89086 1.28015 1.15547 0.88745 1.25699 0.94513 0.91498 0.99735 1.69761 1.12012 1.27887 1.34734 0.86992 0.83305 0.78382 0.81967 1.19955 1.20437 1.15673 1.20210 0.90562 0.96953 1.11479 1.20350 0.99867 0.93096 1.00947 1.17295 0.89463 0.79938 1.04753 1.91320 1.80478 1.47640 1.94393 0.92935 0.92833 0.92719 0.87737 0.92325 0.94035 0.91518 0.90889 0.92851 0.93851 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.82 36.01 0.35 -1.15 15 2 C -0.21 -4.47 5.91 -104.26 -0.62 -5.09 15 3 C -0.08 -1.66 9.30 -39.67 -0.37 -2.03 15 4 C -0.15 -3.56 4.21 -103.91 -0.44 -3.99 15 5 C -0.09 -2.00 8.62 36.00 0.31 -1.69 15 6 C 0.11 2.81 4.36 -106.83 -0.47 2.35 15 7 C -0.49 -12.71 7.87 -37.75 -0.30 -13.00 15 8 H 0.09 2.62 7.38 -52.49 -0.39 2.23 15 9 C 0.10 2.60 3.94 -17.35 -0.07 2.53 15 10 N -0.82 -21.44 13.93 55.55 0.77 -20.67 15 11 Si 0.87 19.94 25.14 -169.99 -4.27 15.66 15 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 14 H -0.23 -5.40 5.66 56.52 0.32 -5.08 15 15 C -0.19 -4.46 5.94 -103.85 -0.62 -5.08 15 16 C -0.09 -1.80 9.44 36.01 0.34 -1.46 15 17 C 0.10 2.33 7.17 -39.50 -0.28 2.05 15 18 F -0.16 -3.37 15.65 2.25 0.04 -3.33 15 19 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.05 0.87 7.63 -51.93 -0.40 0.47 15 21 H 0.05 0.81 8.08 -51.93 -0.42 0.39 15 22 H 0.10 1.89 8.06 -52.48 -0.42 1.47 15 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.04 0.76 8.04 -51.93 -0.42 0.34 15 25 H 0.07 1.51 3.14 -51.93 -0.16 1.35 15 26 H 0.28 6.76 8.30 -40.82 -0.34 6.42 15 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 15 28 H 0.04 0.82 7.63 -51.93 -0.40 0.43 15 29 H 0.07 1.50 6.72 -51.93 -0.35 1.15 15 LS Contribution 240.56 15.07 3.63 3.63 Total: -1.00 -26.51 240.56 -5.42 -31.93 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -3.44 Total: -0.64 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: -2.15 Total: -26.57 kcal Atomic # 7 Polarization: -21.44 SS G_CDS: 0.77 Total: -20.67 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.04 Total: -3.33 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.27 Total: 15.66 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -26.51 -5.42 -31.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214156960.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.894 kcal (2) G-P(sol) polarization free energy of solvation -26.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds