Wall clock time and date at job start Mon Mar 30 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38622 * 119.76559 * 2 1 4 4 C 1.37605 * 120.27664 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.09881 * 179.97438 * 4 3 2 6 6 C 1.40746 * 119.79647 * 359.97438 * 4 3 2 7 7 C 1.41395 * 120.23335 * 179.97438 * 6 4 3 8 8 H 1.07999 * 119.99899 * 232.14158 * 7 6 4 9 9 C 1.39935 * 120.00104 * 52.12764 * 7 6 4 10 10 N 1.30824 * 120.00196 * 203.67408 * 9 7 6 11 11 Si 1.86802 * 119.99993 * 23.67847 * 9 7 6 12 12 H 1.48501 * 109.47361 * 86.02148 * 11 9 7 13 13 H 1.48503 * 109.47058 * 206.02395 * 11 9 7 14 14 H 1.48504 * 109.46942 * 326.01903 * 11 9 7 15 15 C 1.40659 * 119.53504 * 359.97438 * 6 4 3 16 16 C 1.50701 * 120.13513 * 180.02562 * 15 6 4 17 17 C 1.37862 * 119.72222 * 0.28324 * 15 6 4 18 18 F 1.35099 * 119.89954 * 179.72040 * 17 15 6 19 19 H 1.09000 * 109.46965 * 89.99841 * 1 2 3 20 20 H 1.09001 * 109.47075 * 210.00279 * 1 2 3 21 21 H 1.09004 * 109.46824 * 330.00162 * 1 2 3 22 22 H 1.08007 * 119.85573 * 359.97438 * 3 2 1 23 23 H 1.09003 * 109.47567 * 263.99453 * 5 4 3 24 24 H 1.08998 * 109.47666 * 23.99745 * 5 4 3 25 25 H 1.09005 * 109.46970 * 143.99729 * 5 4 3 26 26 H 0.97003 * 120.00385 * 180.02562 * 10 9 7 27 27 H 1.08997 * 109.46829 * 90.00608 * 16 15 6 28 28 H 1.09001 * 109.46921 * 209.99788 * 16 15 6 29 29 H 1.08995 * 109.47703 * 330.00316 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2033 0.0000 4 6 3.5712 1.2156 -0.0005 5 6 4.3153 2.5261 -0.0011 6 6 4.2815 0.0005 -0.0005 7 6 5.6954 0.0023 -0.0016 8 1 6.2356 -0.5713 -0.7402 9 6 6.3949 0.7476 0.9541 10 7 7.6199 1.1375 0.7114 11 14 5.5795 1.1858 2.5767 12 1 5.7706 0.0743 3.5428 13 1 6.1922 2.4247 3.1199 14 1 4.1275 1.4068 2.3572 15 6 3.5748 -1.2157 0.0006 16 6 4.3216 -2.5246 0.0012 17 6 2.1962 -1.2052 -0.0043 18 9 1.5139 -2.3713 -0.0090 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.6490 2.1351 -0.0004 23 1 4.5878 2.7888 -1.0233 24 1 3.6785 3.3057 0.4169 25 1 5.2179 2.4316 0.6027 26 1 8.1049 1.6538 1.3740 27 1 4.5020 -2.8395 1.0290 28 1 3.7284 -3.2816 -0.5119 29 1 5.2745 -2.3996 -0.5130 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214156960.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:51 Heat of formation + Delta-G solvation = -56.733703 kcal Electronic energy + Delta-G solvation = -13720.307637 eV Core-core repulsion = 11328.404454 eV Total energy + Delta-G solvation = -2391.903183 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.65641 -40.03409 -35.79619 -34.21243 -33.49004 -29.52806 -28.64462 -27.21061 -25.16323 -21.59161 -21.35116 -19.63887 -17.72339 -17.31671 -16.55650 -16.37184 -15.22346 -14.99204 -14.56514 -14.36720 -14.17917 -14.00475 -13.92305 -13.51752 -13.45225 -13.15138 -12.85338 -12.54508 -12.19228 -11.86169 -11.78888 -11.66425 -11.36875 -10.82036 -9.22845 -8.96789 -8.70364 -6.39920 0.57536 0.65734 1.28539 1.36686 1.46316 2.17774 2.56606 3.19538 3.65862 4.13047 4.15898 4.29976 4.58527 4.68239 4.71056 4.85899 4.88593 4.89517 4.95675 5.01101 5.11230 5.15479 5.27913 5.47992 5.64034 5.69957 5.74240 6.03847 6.26317 6.45466 6.76611 6.93045 8.35822 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.035464 B = 0.013837 C = 0.011694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.347172 B = 2023.096289 C = 2393.805925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.200 4.200 3 C -0.083 4.083 4 C -0.162 4.162 5 C -0.096 4.096 6 C 0.088 3.912 7 C -0.509 4.509 8 H 0.058 0.942 9 C 0.074 3.926 10 N -0.859 5.859 11 Si 0.917 3.083 12 H -0.280 1.280 13 H -0.263 1.263 14 H -0.232 1.232 15 C -0.205 4.205 16 C -0.083 4.083 17 C 0.086 3.914 18 F -0.153 7.153 19 H 0.070 0.930 20 H 0.057 0.943 21 H 0.080 0.920 22 H 0.142 0.858 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.287 0.713 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 1.202 1.472 9.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.201 4.201 3 C -0.101 4.101 4 C -0.164 4.164 5 C -0.153 4.153 6 C 0.086 3.914 7 C -0.540 4.540 8 H 0.076 0.924 9 C -0.138 4.138 10 N -0.487 5.487 11 Si 0.738 3.262 12 H -0.207 1.207 13 H -0.188 1.188 14 H -0.155 1.155 15 C -0.207 4.207 16 C -0.140 4.140 17 C 0.067 3.933 18 F -0.132 7.132 19 H 0.089 0.911 20 H 0.076 0.924 21 H 0.099 0.901 22 H 0.160 0.840 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.337 1.274 1.509 9.544 hybrid contribution 0.385 -0.315 0.491 0.699 sum -8.953 0.958 2.000 9.223 Atomic orbital electron populations 1.20513 0.88969 1.02843 1.02372 1.19897 0.97554 0.91184 1.11491 1.20717 0.92791 0.97131 0.99427 1.20476 0.93921 0.95436 1.06520 1.20701 0.99180 0.93675 1.01742 1.17454 0.93427 0.90053 0.90461 1.18821 0.90038 1.29104 1.16038 0.92420 1.26191 0.94743 0.91310 1.01544 1.69791 1.13288 1.29730 1.35939 0.86288 0.82586 0.78479 0.78815 1.20658 1.18762 1.15499 1.20534 0.91660 0.97424 1.11040 1.20334 0.99400 0.92920 1.01335 1.17461 0.89231 0.80961 1.05624 1.91331 1.80129 1.47373 1.94400 0.91139 0.92379 0.90086 0.83997 0.92233 0.90712 0.93194 0.90304 0.92318 0.92133 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.57 9.82 71.24 0.70 -1.87 15 2 C -0.20 -7.57 5.91 -19.63 -0.12 -7.69 15 3 C -0.08 -3.15 9.30 22.21 0.21 -2.94 15 4 C -0.16 -7.16 4.21 -19.40 -0.08 -7.24 15 5 C -0.10 -3.91 8.62 71.24 0.61 -3.30 15 6 C 0.09 4.35 4.36 -21.30 -0.09 4.26 15 7 C -0.51 -27.57 7.87 23.46 0.18 -27.39 15 8 H 0.06 3.43 7.38 -2.91 -0.02 3.41 15 9 C 0.07 3.88 3.94 85.25 0.34 4.22 15 10 N -0.86 -46.45 13.93 21.82 0.30 -46.15 15 11 Si 0.92 40.86 25.14 68.60 1.72 42.59 15 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 13 H -0.26 -10.90 7.11 99.48 0.71 -10.19 15 14 H -0.23 -10.15 5.66 99.48 0.56 -9.59 15 15 C -0.20 -9.51 5.94 -19.36 -0.12 -9.63 15 16 C -0.08 -3.52 9.44 71.24 0.67 -2.84 15 17 C 0.09 3.66 7.17 22.33 0.16 3.82 15 18 F -0.15 -6.11 15.65 44.97 0.70 -5.41 15 19 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 20 H 0.06 1.62 7.63 -2.39 -0.02 1.60 15 21 H 0.08 1.92 8.08 -2.38 -0.02 1.90 15 22 H 0.14 4.33 8.06 -2.91 -0.02 4.30 15 23 H 0.06 2.36 8.14 -2.39 -0.02 2.34 15 24 H 0.07 2.47 8.04 -2.39 -0.02 2.45 15 25 H 0.05 2.21 3.14 -2.38 -0.01 2.20 15 26 H 0.29 14.14 8.30 -92.71 -0.77 13.37 15 27 H 0.06 2.37 8.14 -2.39 -0.02 2.35 15 28 H 0.06 2.28 7.63 -2.39 -0.02 2.26 15 29 H 0.06 2.57 6.72 -2.39 -0.02 2.55 15 Total: -1.00 -56.93 240.56 6.21 -50.73 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.01 Total: 8.84 kcal Atomic # 6 Polarization: -53.07 SS G_CDS: 2.47 Total: -50.60 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.30 Total: -46.15 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.70 Total: -5.41 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.72 Total: 42.59 kcal Total: -56.93 6.21 -50.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214156960.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.007 kcal (2) G-P(sol) polarization free energy of solvation -56.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds