Wall clock time and date at job start Mon Mar 30 2020 02:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00431 * 2 1 4 4 H 1.48500 * 109.46779 * 269.99712 * 3 2 1 5 5 H 1.48497 * 109.47003 * 29.99566 * 3 2 1 6 6 H 1.48495 * 109.47150 * 149.99690 * 3 2 1 7 7 C 1.37885 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00109 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47034 * 180.02562 * 9 7 2 11 11 C 1.54251 * 111.82436 * 61.25923 * 10 9 7 12 12 C 1.54875 * 104.22631 * 145.35427 * 11 10 9 13 13 C 1.54876 * 102.74013 * 321.84247 * 12 11 10 14 14 C 1.54191 * 104.28295 * 37.94912 * 13 12 11 15 15 H 1.08997 * 111.76654 * 214.79386 * 14 13 12 16 16 C 1.53739 * 109.21226 * 91.22101 * 14 13 12 17 17 C 1.54025 * 105.39405 * 227.30778 * 16 14 13 18 18 C 1.51357 * 110.89579 * 299.09482 * 10 9 7 19 19 O 1.20762 * 126.75495 * 77.20742 * 18 10 9 20 20 H 0.97003 * 119.99381 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46626 * 60.00761 * 9 7 2 22 22 H 1.09000 * 109.47735 * 300.00803 * 9 7 2 23 23 H 1.08997 * 110.48102 * 264.04005 * 11 10 9 24 24 H 1.08998 * 110.48149 * 26.53772 * 11 10 9 25 25 H 1.08996 * 110.75870 * 80.15120 * 12 11 10 26 26 H 1.08994 * 110.75776 * 203.34829 * 12 11 10 27 27 H 1.08993 * 110.46884 * 279.24678 * 13 12 11 28 28 H 1.08993 * 110.46561 * 156.64627 * 13 12 11 29 29 H 1.09000 * 110.25949 * 108.32513 * 16 14 13 30 30 H 1.09009 * 110.33743 * 346.32562 * 16 14 13 31 31 H 1.09002 * 110.32300 * 148.33598 * 17 16 14 32 32 H 1.08998 * 110.31956 * 270.43649 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6366 0.0001 11 6 3.5629 -3.4071 -1.2551 12 6 4.7455 -4.3552 -1.5730 13 6 5.9815 -3.4795 -1.2502 14 6 5.5643 -2.6785 -0.0004 15 1 5.9882 -1.6744 -0.0038 16 6 5.9792 -3.4550 1.2599 17 6 4.7410 -3.4396 2.1758 18 6 3.5535 -3.3745 1.2360 19 8 2.4509 -3.8254 1.4344 20 1 -0.4849 0.8401 -0.0004 21 1 3.8751 -0.6799 0.8895 22 1 3.8746 -0.6808 -0.8904 23 1 2.6608 -3.9807 -1.0422 24 1 3.3898 -2.7193 -2.0828 25 1 4.7179 -5.2358 -0.9313 26 1 4.7372 -4.6442 -2.6239 27 1 6.1988 -2.8064 -2.0794 28 1 6.8457 -4.1063 -1.0302 29 1 6.8173 -2.9594 1.7498 30 1 6.2457 -4.4803 1.0027 31 1 4.7010 -4.3501 2.7738 32 1 4.7599 -2.5629 2.8232 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220968291.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:53 Heat of formation + Delta-G solvation = -82.739363 kcal Electronic energy + Delta-G solvation = -14300.554247 eV Core-core repulsion = 12030.983679 eV Total energy + Delta-G solvation = -2269.570568 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.61098 -38.44423 -35.16804 -34.09173 -32.54884 -29.31164 -27.72873 -25.41927 -23.69702 -21.88377 -20.95889 -19.12866 -18.67721 -17.09172 -16.59460 -16.14468 -15.82082 -15.34826 -15.04442 -14.51926 -14.20452 -13.95322 -13.47965 -13.37067 -13.03215 -12.59034 -12.34923 -12.24962 -12.06540 -11.85561 -11.61625 -11.29253 -11.26270 -11.21209 -11.03400 -10.77633 -9.99086 -8.25580 -6.29963 1.19619 1.33573 1.36938 1.47541 2.36188 3.08128 3.35322 3.58391 3.76815 3.84172 4.26123 4.28537 4.36989 4.52439 4.70632 4.72047 4.77175 4.83231 4.93449 4.97995 5.09294 5.11140 5.22040 5.28919 5.34189 5.37638 5.46046 5.51675 5.59722 5.67639 6.34385 6.75047 6.88088 7.33102 8.92129 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.035115 B = 0.011727 C = 0.011287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.182029 B = 2387.054185 C = 2480.199937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.238 1.238 7 C -0.524 4.524 8 H 0.030 0.970 9 C 0.013 3.987 10 C -0.113 4.113 11 C -0.101 4.101 12 C -0.120 4.120 13 C -0.105 4.105 14 C -0.087 4.087 15 H 0.094 0.906 16 C -0.099 4.099 17 C -0.180 4.180 18 C 0.371 3.629 19 O -0.492 6.492 20 H 0.263 0.737 21 H 0.024 0.976 22 H 0.034 0.966 23 H 0.026 0.974 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.238 -5.203 -0.030 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.199 4.199 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.161 1.161 7 C -0.562 4.562 8 H 0.049 0.951 9 C -0.024 4.024 10 C -0.114 4.114 11 C -0.139 4.139 12 C -0.158 4.158 13 C -0.142 4.142 14 C -0.106 4.106 15 H 0.112 0.888 16 C -0.136 4.136 17 C -0.218 4.218 18 C 0.249 3.751 19 O -0.367 6.367 20 H 0.072 0.928 21 H 0.043 0.957 22 H 0.052 0.948 23 H 0.045 0.955 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 17.528 -5.346 0.078 18.325 hybrid contribution -1.134 0.861 0.005 1.424 sum 16.394 -4.485 0.083 16.996 Atomic orbital electron populations 1.70121 1.08640 1.27862 1.53235 1.26114 0.95617 1.03712 0.94454 0.85654 0.79684 0.77941 0.79363 1.18883 1.21478 1.16116 1.21522 0.92144 0.93155 1.49383 0.95116 1.19433 0.93882 0.91841 0.97227 1.22243 0.97363 0.96550 0.95288 1.22179 0.97684 0.97615 0.96445 1.22534 0.94182 0.97331 1.01741 1.22410 0.97317 0.97842 0.96681 1.22258 0.90809 1.00799 0.96725 0.88799 1.22137 0.95914 1.01824 0.93694 1.22773 0.94826 1.04958 0.99194 1.25411 0.87419 0.72423 0.89871 1.90329 1.25903 1.41570 1.78865 0.92796 0.95736 0.94803 0.95503 0.92385 0.91733 0.90234 0.90896 0.88391 0.87833 0.89356 0.88379 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.30 13.96 21.45 0.30 -63.00 16 2 C 0.00 -0.21 5.47 84.66 0.46 0.25 16 3 Si 0.95 44.80 27.47 68.60 1.88 46.69 16 4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 7 C -0.52 -31.44 8.59 25.60 0.22 -31.22 16 8 H 0.03 2.13 6.75 -2.91 -0.02 2.11 16 9 C 0.01 0.63 3.00 29.85 0.09 0.72 16 10 C -0.11 -4.37 0.56 -51.84 -0.03 -4.40 16 11 C -0.10 -3.94 5.15 31.66 0.16 -3.78 16 12 C -0.12 -3.21 6.88 31.88 0.22 -2.99 16 13 C -0.11 -2.23 6.16 31.64 0.19 -2.04 16 14 C -0.09 -2.26 3.38 -9.68 -0.03 -2.29 16 15 H 0.09 2.27 7.80 -2.39 -0.02 2.25 16 16 C -0.10 -2.00 6.32 31.19 0.20 -1.80 16 17 C -0.18 -5.01 6.72 30.47 0.20 -4.81 16 18 C 0.37 15.34 6.03 29.59 0.18 15.52 16 19 O -0.49 -25.62 16.35 -1.46 -0.02 -25.64 16 20 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 21 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 22 H 0.03 1.50 7.57 -2.39 -0.02 1.48 16 23 H 0.03 1.22 7.47 -2.39 -0.02 1.20 16 24 H 0.06 2.37 7.95 -2.39 -0.02 2.35 16 25 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.10 1.47 7.62 -2.39 -0.02 1.45 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 1.48 7.48 -2.38 -0.02 1.46 16 31 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -76.79 253.79 5.06 -71.73 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 1.03 Total: 7.06 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 1.87 Total: -36.84 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: 0.30 Total: -63.00 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.02 Total: -25.64 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.69 kcal Total: -76.79 5.06 -71.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220968291.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.006 kcal (2) G-P(sol) polarization free energy of solvation -76.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds