Wall clock time and date at job start Mon Mar 30 2020 02:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99913 * 2 1 4 4 H 1.48506 * 109.47152 * 240.00032 * 3 2 1 5 5 H 1.48503 * 109.47012 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47096 * 120.00034 * 3 2 1 7 7 C 1.37878 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99557 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00437 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47336 * 180.02562 * 9 7 2 11 11 C 1.49711 * 107.22105 * 73.01147 * 10 9 7 12 12 C 1.56006 * 104.11441 * 77.41264 * 11 10 9 13 13 C 1.56199 * 105.81922 * 6.21679 * 12 11 10 14 14 C 1.51986 * 102.09591 * 25.35494 * 13 12 11 15 15 H 1.09002 * 111.44221 * 72.88879 * 14 13 12 16 16 C 1.52072 * 121.56798 * 207.51817 * 14 13 12 17 17 C 1.56200 * 101.63999 * 150.96154 * 16 14 13 18 18 C 1.47413 * 106.77747 * 291.35240 * 10 9 7 19 19 O 1.20759 * 127.10271 * 102.82803 * 18 10 9 20 20 H 0.97000 * 120.00285 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47289 * 60.00270 * 9 7 2 22 22 H 1.09005 * 109.47073 * 300.00633 * 9 7 2 23 23 H 1.09004 * 110.49955 * 196.05841 * 11 10 9 24 24 H 1.08990 * 110.50793 * 318.75290 * 11 10 9 25 25 H 1.09001 * 110.20557 * 247.12843 * 12 11 10 26 26 H 1.08997 * 110.18902 * 125.29423 * 12 11 10 27 27 H 1.09006 * 110.91030 * 267.14283 * 13 12 11 28 28 H 1.09001 * 110.91048 * 143.56845 * 13 12 11 29 29 H 1.09004 * 110.98929 * 269.04070 * 16 14 13 30 30 H 1.08999 * 110.99847 * 32.86617 * 16 14 13 31 31 H 1.09006 * 110.12749 * 94.39840 * 17 16 14 32 32 H 1.08997 * 110.12544 * 216.08264 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 2.8510 -3.7275 1.3671 12 6 1.7485 -4.4039 2.2394 13 6 0.6214 -4.8303 1.2457 14 6 1.3868 -4.9803 -0.0588 15 1 2.0101 -5.8744 -0.0545 16 6 0.7106 -4.7801 -1.4061 17 6 1.9011 -4.2801 -2.2851 18 6 2.9125 -3.6516 -1.3150 19 8 4.0229 -3.2482 -1.5652 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 3.7552 -4.3361 1.3554 24 1 3.0687 -2.7255 1.7365 25 1 1.3578 -3.6945 2.9689 26 1 2.1542 -5.2796 2.7458 27 1 -0.1392 -4.0538 1.1636 28 1 0.1757 -5.7785 1.5466 29 1 0.3123 -5.7207 -1.7867 30 1 -0.0719 -4.0240 -1.3419 31 1 2.3573 -5.1190 -2.8109 32 1 1.5527 -3.5339 -2.9990 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220968340.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:55 Heat of formation + Delta-G solvation = -40.779768 kcal Electronic energy + Delta-G solvation = -14438.469349 eV Core-core repulsion = 12170.718286 eV Total energy + Delta-G solvation = -2267.751063 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.64033 -37.11809 -33.18263 -32.83185 -29.70679 -27.33005 -25.91904 -24.29918 -22.73685 -20.38446 -19.00433 -17.52406 -16.55966 -15.12637 -15.07366 -14.71215 -14.40767 -13.83367 -13.40357 -12.48577 -12.22957 -12.06014 -11.84498 -11.82108 -11.24321 -10.92915 -10.81221 -10.56602 -10.48283 -10.30733 -10.20847 -9.88601 -9.67476 -9.14401 -8.99288 -8.43586 -8.26395 -6.02808 -4.03442 2.84262 3.34983 3.38058 3.43536 4.42149 4.54327 5.07210 5.23205 5.33554 5.34788 5.58234 5.63465 5.66645 5.90242 5.97896 6.13656 6.14980 6.23032 6.36820 6.37425 6.48408 6.53381 6.68187 6.70333 6.83041 7.00666 7.15159 7.57790 7.67255 7.95566 8.35503 8.40392 9.02684 9.60678 11.07818 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.031924 B = 0.012625 C = 0.011541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.875730 B = 2217.238354 C = 2425.476961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.033 3.967 10 C -0.139 4.139 11 C -0.084 4.084 12 C -0.115 4.115 13 C -0.110 4.110 14 C -0.107 4.107 15 H 0.070 0.930 16 C -0.106 4.106 17 C -0.173 4.173 18 C 0.409 3.591 19 O -0.461 6.461 20 H 0.261 0.739 21 H 0.027 0.973 22 H 0.039 0.961 23 H 0.046 0.954 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 -9.812 0.419 9.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.140 4.140 11 C -0.122 4.122 12 C -0.153 4.153 13 C -0.147 4.147 14 C -0.126 4.126 15 H 0.088 0.912 16 C -0.143 4.143 17 C -0.211 4.211 18 C 0.286 3.714 19 O -0.335 6.335 20 H 0.070 0.930 21 H 0.045 0.955 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.406 -9.470 0.290 9.483 hybrid contribution 0.365 1.048 -0.050 1.111 sum 0.771 -8.422 0.240 8.460 Atomic orbital electron populations 1.69932 1.05933 1.26757 1.50856 1.24937 0.94778 0.99072 0.95218 0.86699 0.79652 0.83171 0.78831 1.20230 1.21331 1.20185 1.21262 0.93322 0.90879 1.50554 0.92429 1.19570 0.92673 0.89409 0.98750 1.21701 0.99719 0.98238 0.94375 1.21212 0.96290 1.01454 0.93213 1.22830 0.95604 0.99093 0.97776 1.22074 0.97928 1.00658 0.94085 1.22403 0.98368 0.97285 0.94502 0.91208 1.22067 0.97206 1.00901 0.94153 1.23274 0.97021 1.01380 0.99443 1.23625 0.85113 0.71224 0.91461 1.90299 1.20263 1.38367 1.84566 0.92954 0.95450 0.94288 0.93538 0.89973 0.91723 0.92786 0.89803 0.92769 0.91981 0.89300 0.89839 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.54 7.62 -34.44 -0.26 -14.80 16 8 H 0.06 1.66 7.59 -52.48 -0.40 1.27 16 9 C 0.03 0.79 2.80 -27.88 -0.08 0.71 16 10 C -0.14 -2.83 0.94 -156.42 -0.15 -2.98 16 11 C -0.08 -1.62 6.07 -26.75 -0.16 -1.78 16 12 C -0.12 -1.87 6.46 -23.41 -0.15 -2.03 16 13 C -0.11 -1.74 6.13 -25.53 -0.16 -1.90 16 14 C -0.11 -1.75 2.96 -89.20 -0.26 -2.01 16 15 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 16 C -0.11 -1.65 6.18 -25.49 -0.16 -1.80 16 17 C -0.17 -2.92 6.39 -24.71 -0.16 -3.07 16 18 C 0.41 8.66 6.38 -29.12 -0.19 8.48 16 19 O -0.46 -11.13 17.99 6.00 0.11 -11.02 16 20 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 21 H 0.03 0.69 5.36 -51.93 -0.28 0.41 16 22 H 0.04 0.98 5.46 -51.93 -0.28 0.69 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.08 1.77 7.07 -51.93 -0.37 1.40 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.48 6.22 -51.93 -0.32 1.16 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.52 6.26 -51.93 -0.32 1.20 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 250.91 15.07 3.78 3.78 Total: -1.00 -30.23 250.91 -6.71 -36.94 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -4.49 Total: -1.85 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -1.82 Total: -19.56 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.74 Total: -25.34 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.11 Total: -11.02 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.23 -6.71 -36.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220968340.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.840 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds