Wall clock time and date at job start Mon Mar 30 2020 02:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99325 * 2 1 4 4 H 1.48505 * 109.47126 * 239.99488 * 3 2 1 5 5 H 1.48497 * 109.47616 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47083 * 119.99908 * 3 2 1 7 7 C 1.37868 * 120.00596 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00436 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47347 * 179.97438 * 9 7 2 11 11 C 1.50959 * 109.45607 * 288.80518 * 10 9 7 12 12 C 1.56306 * 101.70065 * 290.97268 * 11 10 9 13 13 C 1.56273 * 105.97367 * 335.09719 * 12 11 10 14 14 C 1.50775 * 104.14033 * 353.16856 * 13 12 11 15 15 H 1.09006 * 110.23593 * 277.68888 * 14 13 12 16 16 C 1.51522 * 123.77263 * 144.04996 * 14 13 12 17 17 C 1.56288 * 101.40321 * 204.59568 * 16 14 13 18 18 C 1.47798 * 108.76843 * 69.65590 * 10 9 7 19 19 O 1.20761 * 127.61274 * 259.51737 * 18 10 9 20 20 H 0.96992 * 120.00715 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47080 * 59.99596 * 9 7 2 22 22 H 1.08997 * 109.47016 * 299.99786 * 9 7 2 23 23 H 1.09001 * 110.97886 * 49.07151 * 11 10 9 24 24 H 1.08995 * 110.98579 * 172.82984 * 11 10 9 25 25 H 1.08999 * 110.16949 * 94.45211 * 12 11 10 26 26 H 1.09004 * 110.16030 * 216.16539 * 12 11 10 27 27 H 1.09001 * 110.64994 * 234.47157 * 13 12 11 28 28 H 1.08999 * 110.46608 * 111.77426 * 13 12 11 29 29 H 1.09002 * 111.04552 * 322.63978 * 16 14 13 30 30 H 1.08997 * 111.04615 * 86.55487 * 16 14 13 31 31 H 1.08998 * 110.12305 * 143.55002 * 17 16 14 32 32 H 1.08991 * 110.12778 * 265.23161 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2126 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0005 10 6 2.2456 -3.6619 0.0005 11 6 2.9211 -3.7459 -1.3469 12 6 1.7437 -4.2119 -2.2632 13 6 0.7353 -4.9507 -1.3254 14 6 1.4494 -5.0213 0.0006 15 1 2.1406 -5.8641 0.0122 16 6 0.7525 -4.8963 1.3403 17 6 1.9200 -4.3946 2.2502 18 6 2.9244 -3.7072 1.3126 19 8 4.0255 -3.2944 1.5874 20 1 -0.4851 0.8399 -0.0004 21 1 0.6249 -2.5571 -0.8896 22 1 0.6243 -2.5567 0.8903 23 1 3.2948 -2.7702 -1.6576 24 1 3.7234 -4.4835 -1.3360 25 1 1.2660 -3.3499 -2.7290 26 1 2.1111 -4.8962 -3.0281 27 1 0.5261 -5.9530 -1.6994 28 1 -0.1874 -4.3781 -1.2313 29 1 -0.0523 -4.1626 1.2959 30 1 0.3797 -5.8628 1.6792 31 1 1.5436 -3.6826 2.9846 32 1 2.3927 -5.2382 2.7530 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220968399.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:57 Heat of formation + Delta-G solvation = -46.234308 kcal Electronic energy + Delta-G solvation = -14407.618999 eV Core-core repulsion = 12139.631410 eV Total energy + Delta-G solvation = -2267.987590 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.54086 -37.10929 -33.19169 -32.83302 -29.75226 -27.25718 -25.98101 -24.30180 -22.83006 -20.29282 -18.98980 -17.57398 -16.46993 -15.25777 -15.10226 -14.60942 -14.43809 -13.88533 -13.37863 -12.46067 -12.24448 -12.09446 -11.89145 -11.81172 -11.17377 -11.00614 -10.79094 -10.55481 -10.50228 -10.36115 -10.19721 -9.87243 -9.76555 -9.21742 -8.99436 -8.45105 -8.27092 -6.02130 -4.02994 2.80311 3.35272 3.38425 3.43746 4.41767 4.54286 5.07025 5.17718 5.31926 5.34450 5.56265 5.63203 5.67353 5.89362 5.98034 6.08431 6.14830 6.19558 6.36421 6.39594 6.47341 6.53259 6.65920 6.67476 6.84083 6.98205 7.11129 7.58621 7.67557 7.96478 8.33853 8.39217 9.03137 9.61257 11.08600 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.032109 B = 0.012484 C = 0.011388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.823916 B = 2242.311704 C = 2458.048989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.043 3.957 10 C -0.132 4.132 11 C -0.088 4.088 12 C -0.115 4.115 13 C -0.103 4.103 14 C -0.109 4.109 15 H 0.064 0.936 16 C -0.103 4.103 17 C -0.176 4.176 18 C 0.403 3.597 19 O -0.458 6.458 20 H 0.261 0.739 21 H 0.037 0.963 22 H 0.025 0.975 23 H 0.079 0.921 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.189 -9.911 -0.586 9.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.006 3.994 10 C -0.133 4.133 11 C -0.126 4.126 12 C -0.152 4.152 13 C -0.140 4.140 14 C -0.128 4.128 15 H 0.082 0.918 16 C -0.140 4.140 17 C -0.214 4.214 18 C 0.279 3.721 19 O -0.331 6.331 20 H 0.070 0.930 21 H 0.055 0.945 22 H 0.043 0.957 23 H 0.097 0.903 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.612 -9.570 -0.442 9.600 hybrid contribution 0.357 1.008 0.073 1.072 sum 0.969 -8.563 -0.369 8.625 Atomic orbital electron populations 1.69931 1.05933 1.26752 1.50906 1.24935 0.94778 0.99070 0.95248 0.86699 0.79645 0.83178 0.78821 1.20189 1.21336 1.20228 1.21224 0.93298 0.90786 1.50519 0.92431 1.19258 0.92430 0.89170 0.98552 1.22098 0.99410 0.97751 0.94001 1.21577 0.96042 1.01286 0.93652 1.22908 0.95779 0.99372 0.97189 1.21622 0.98981 0.99308 0.94103 1.22066 0.98771 0.97419 0.94539 0.91770 1.21924 0.97337 1.00836 0.93908 1.23354 0.97218 1.01182 0.99634 1.23847 0.84957 0.71938 0.91313 1.90302 1.20645 1.39353 1.82832 0.92955 0.94460 0.95712 0.90273 0.93273 0.91052 0.92976 0.92700 0.90928 0.89536 0.91955 0.88736 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.49 7.90 -34.44 -0.27 -14.76 16 8 H 0.06 1.66 7.54 -52.49 -0.40 1.26 16 9 C 0.04 1.03 3.14 -27.88 -0.09 0.95 16 10 C -0.13 -2.67 0.67 -155.58 -0.10 -2.78 16 11 C -0.09 -1.68 6.15 -25.98 -0.16 -1.84 16 12 C -0.11 -1.91 6.20 -23.20 -0.14 -2.05 16 13 C -0.10 -1.60 6.05 -26.09 -0.16 -1.76 16 14 C -0.11 -1.78 2.62 -90.01 -0.24 -2.02 16 15 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.10 -1.58 6.26 -25.71 -0.16 -1.74 16 17 C -0.18 -2.93 6.44 -24.63 -0.16 -3.09 16 18 C 0.40 8.47 6.59 -28.92 -0.19 8.28 16 19 O -0.46 -10.97 17.99 6.00 0.11 -10.86 16 20 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 21 H 0.04 0.94 5.52 -51.93 -0.29 0.65 16 22 H 0.02 0.63 5.79 -51.93 -0.30 0.33 16 23 H 0.08 1.68 7.28 -51.93 -0.38 1.30 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 1.28 7.65 -51.93 -0.40 0.88 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.21 7.31 -51.93 -0.38 0.83 16 29 H 0.09 1.46 6.44 -51.93 -0.33 1.13 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 252.45 15.07 3.80 3.80 Total: -1.00 -30.23 252.45 -6.71 -36.94 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -4.57 Total: -2.32 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -1.77 Total: -19.18 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.74 Total: -25.42 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.11 Total: -10.86 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.23 -6.71 -36.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220968399.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.297 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds