Wall clock time and date at job start Mon Mar 30 2020 02:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99325 * 2 1 4 4 H 1.48505 * 109.47126 * 239.99488 * 3 2 1 5 5 H 1.48497 * 109.47616 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47083 * 119.99908 * 3 2 1 7 7 C 1.37868 * 120.00596 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00436 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47347 * 179.97438 * 9 7 2 11 11 C 1.50959 * 109.45607 * 288.80518 * 10 9 7 12 12 C 1.56306 * 101.70065 * 290.97268 * 11 10 9 13 13 C 1.56273 * 105.97367 * 335.09719 * 12 11 10 14 14 C 1.50775 * 104.14033 * 353.16856 * 13 12 11 15 15 H 1.09006 * 110.23593 * 277.68888 * 14 13 12 16 16 C 1.51522 * 123.77263 * 144.04996 * 14 13 12 17 17 C 1.56288 * 101.40321 * 204.59568 * 16 14 13 18 18 C 1.47798 * 108.76843 * 69.65590 * 10 9 7 19 19 O 1.20761 * 127.61274 * 259.51737 * 18 10 9 20 20 H 0.96992 * 120.00715 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47080 * 59.99596 * 9 7 2 22 22 H 1.08997 * 109.47016 * 299.99786 * 9 7 2 23 23 H 1.09001 * 110.97886 * 49.07151 * 11 10 9 24 24 H 1.08995 * 110.98579 * 172.82984 * 11 10 9 25 25 H 1.08999 * 110.16949 * 94.45211 * 12 11 10 26 26 H 1.09004 * 110.16030 * 216.16539 * 12 11 10 27 27 H 1.09001 * 110.64994 * 234.47157 * 13 12 11 28 28 H 1.08999 * 110.46608 * 111.77426 * 13 12 11 29 29 H 1.09002 * 111.04552 * 322.63978 * 16 14 13 30 30 H 1.08997 * 111.04615 * 86.55487 * 16 14 13 31 31 H 1.08998 * 110.12305 * 143.55002 * 17 16 14 32 32 H 1.08991 * 110.12778 * 265.23161 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2126 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0005 10 6 2.2456 -3.6619 0.0005 11 6 2.9211 -3.7459 -1.3469 12 6 1.7437 -4.2119 -2.2632 13 6 0.7353 -4.9507 -1.3254 14 6 1.4494 -5.0213 0.0006 15 1 2.1406 -5.8641 0.0122 16 6 0.7525 -4.8963 1.3403 17 6 1.9200 -4.3946 2.2502 18 6 2.9244 -3.7072 1.3126 19 8 4.0255 -3.2944 1.5874 20 1 -0.4851 0.8399 -0.0004 21 1 0.6249 -2.5571 -0.8896 22 1 0.6243 -2.5567 0.8903 23 1 3.2948 -2.7702 -1.6576 24 1 3.7234 -4.4835 -1.3360 25 1 1.2660 -3.3499 -2.7290 26 1 2.1111 -4.8962 -3.0281 27 1 0.5261 -5.9530 -1.6994 28 1 -0.1874 -4.3781 -1.2313 29 1 -0.0523 -4.1626 1.2959 30 1 0.3797 -5.8628 1.6792 31 1 1.5436 -3.6826 2.9846 32 1 2.3927 -5.2382 2.7530 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220968399.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:57 Heat of formation + Delta-G solvation = -63.889535 kcal Electronic energy + Delta-G solvation = -14408.384588 eV Core-core repulsion = 12139.631410 eV Total energy + Delta-G solvation = -2268.753178 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.05337 -38.76038 -35.01869 -34.50327 -31.45602 -28.91018 -27.54063 -25.75139 -24.77207 -21.70572 -20.35972 -19.26920 -18.43987 -16.98938 -16.65309 -16.30101 -16.07275 -15.56714 -14.93098 -14.25179 -13.86403 -13.62533 -13.28898 -13.21669 -13.11921 -12.88717 -12.51960 -12.35028 -12.08198 -11.79452 -11.69661 -11.52356 -11.17757 -10.96466 -10.74123 -10.52991 -9.96707 -8.21421 -6.27757 1.16028 1.33704 1.34877 1.43267 2.37460 3.07227 3.12060 3.66070 3.77396 4.03852 4.20780 4.28115 4.34892 4.56231 4.65967 4.70453 4.78624 4.84222 4.99757 5.05825 5.13979 5.20552 5.27323 5.33234 5.36556 5.45736 5.59719 5.69016 5.75136 5.82994 6.26041 6.72332 6.86770 7.39058 8.88638 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.032109 B = 0.012484 C = 0.011388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.823916 B = 2242.311704 C = 2458.048989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.038 0.962 9 C 0.057 3.943 10 C -0.150 4.150 11 C -0.093 4.093 12 C -0.111 4.111 13 C -0.099 4.099 14 C -0.092 4.092 15 H 0.090 0.910 16 C -0.097 4.097 17 C -0.169 4.169 18 C 0.387 3.613 19 O -0.499 6.499 20 H 0.264 0.736 21 H 0.024 0.976 22 H 0.010 0.990 23 H 0.042 0.958 24 H 0.068 0.932 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.086 -11.869 -0.547 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.769 3.231 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.573 4.573 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.151 4.151 11 C -0.131 4.131 12 C -0.148 4.148 13 C -0.137 4.137 14 C -0.111 4.111 15 H 0.108 0.892 16 C -0.134 4.134 17 C -0.207 4.207 18 C 0.266 3.734 19 O -0.375 6.375 20 H 0.073 0.927 21 H 0.042 0.958 22 H 0.029 0.971 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.108 0.892 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.322 -11.534 -0.410 11.546 hybrid contribution 0.466 1.620 0.045 1.686 sum 0.788 -9.914 -0.365 9.952 Atomic orbital electron populations 1.70010 1.06924 1.27582 1.51687 1.25640 0.95637 1.02110 0.95139 0.85840 0.78689 0.79915 0.78682 1.19658 1.20089 1.20466 1.21516 0.92643 0.92944 1.50179 0.94374 1.18997 0.92568 0.89451 0.96991 1.22151 0.99440 0.98956 0.94539 1.21606 0.97555 1.00103 0.93803 1.22872 0.94952 0.99338 0.97659 1.21633 0.97627 1.00899 0.93503 1.22144 0.98458 0.95177 0.95305 0.89168 1.21926 0.96035 1.02337 0.93132 1.23381 0.96454 1.01850 0.98980 1.24592 0.84898 0.71160 0.92712 1.90269 1.22614 1.41117 1.83545 0.92734 0.95822 0.97143 0.93892 0.91356 0.93473 0.89735 0.88811 0.92608 0.91689 0.87588 0.89171 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.73 13.29 21.44 0.28 -54.45 16 2 C 0.01 0.77 5.46 84.65 0.46 1.23 16 3 Si 0.94 46.00 29.54 68.60 2.03 48.02 16 4 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.53 -30.78 7.90 25.60 0.20 -30.58 16 8 H 0.04 2.29 7.54 -2.91 -0.02 2.27 16 9 C 0.06 2.82 3.14 29.85 0.09 2.91 16 10 C -0.15 -6.03 0.67 -52.87 -0.04 -6.07 16 11 C -0.09 -3.54 6.15 31.08 0.19 -3.35 16 12 C -0.11 -3.51 6.20 32.88 0.20 -3.31 16 13 C -0.10 -2.80 6.05 31.01 0.19 -2.62 16 14 C -0.09 -2.72 2.62 -10.40 -0.03 -2.75 16 15 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 16 C -0.10 -2.68 6.26 31.25 0.20 -2.49 16 17 C -0.17 -5.26 6.44 31.95 0.21 -5.05 16 18 C 0.39 16.13 6.59 29.18 0.19 16.32 16 19 O -0.50 -24.28 17.99 -1.45 -0.03 -24.30 16 20 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 21 H 0.02 1.22 5.52 -2.39 -0.01 1.21 16 22 H 0.01 0.54 5.79 -2.39 -0.01 0.52 16 23 H 0.04 1.90 7.28 -2.39 -0.02 1.88 16 24 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.05 1.70 7.65 -2.39 -0.02 1.68 16 26 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 1.77 7.31 -2.39 -0.02 1.75 16 29 H 0.06 2.10 6.44 -2.39 -0.02 2.08 16 30 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -67.15 252.45 5.25 -61.90 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 1.10 Total: 4.57 kcal Atomic # 6 Polarization: -37.62 SS G_CDS: 1.87 Total: -35.74 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.28 Total: -54.45 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.03 Total: -24.30 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -67.15 5.25 -61.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220968399.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.992 kcal (2) G-P(sol) polarization free energy of solvation -67.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds