Wall clock time and date at job start Mon Mar 30 2020 02:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47108 * 240.00127 * 3 2 1 5 5 H 1.48500 * 109.47285 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47308 * 120.00189 * 3 2 1 7 7 C 1.37875 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99680 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00515 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47689 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.50412 * 307.51821 * 10 9 7 12 12 C 1.54778 * 110.45524 * 185.00234 * 10 9 7 13 13 C 1.54680 * 102.77855 * 203.83673 * 12 10 9 14 14 H 1.09000 * 112.82600 * 158.83612 * 13 12 10 15 15 C 1.54677 * 108.61831 * 284.69248 * 13 12 10 16 16 C 1.54850 * 102.90242 * 148.12968 * 15 13 12 17 17 C 1.54213 * 104.19878 * 321.96796 * 16 15 13 18 18 C 1.53832 * 106.74445 * 23.94027 * 17 16 15 19 19 H 1.09001 * 111.70723 * 121.07926 * 18 17 16 20 20 C 1.51347 * 109.16286 * 244.51768 * 18 17 16 21 21 O 1.20765 * 126.28603 * 291.63952 * 20 18 17 22 22 H 0.96997 * 119.99770 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.47045 * 60.00180 * 9 7 2 24 24 H 1.08999 * 109.47332 * 300.00697 * 9 7 2 25 25 H 1.08995 * 110.75254 * 85.51091 * 12 10 9 26 26 H 1.09000 * 110.74642 * 322.15418 * 12 10 9 27 27 H 1.09000 * 110.72465 * 266.48375 * 15 13 12 28 28 H 1.09001 * 110.72601 * 29.77369 * 15 13 12 29 29 H 1.08995 * 110.48329 * 80.64668 * 16 15 13 30 30 H 1.09000 * 110.48082 * 203.29252 * 16 15 13 31 31 H 1.09001 * 110.00497 * 264.62320 * 17 16 15 32 32 H 1.08992 * 110.04638 * 143.28285 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9659 -3.5483 -0.8103 12 6 1.4986 -5.0119 -0.1270 13 6 2.4983 -6.0154 0.4944 14 1 2.0208 -6.9373 0.8265 15 6 3.6423 -6.2630 -0.5167 16 6 4.8637 -6.5215 0.3995 17 6 4.6738 -5.5356 1.5700 18 6 3.1707 -5.2167 1.6415 19 1 2.7476 -5.4833 2.6100 20 6 2.9590 -3.7496 1.3360 21 8 3.2962 -2.8194 2.0285 22 1 -0.4849 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 1.3099 -5.2524 -1.1732 26 1 0.5678 -4.9930 0.4400 27 1 3.4303 -7.1369 -1.1327 28 1 3.8055 -5.3823 -1.1378 29 1 4.8579 -7.5495 0.7618 30 1 5.7911 -6.3085 -0.1321 31 1 5.2402 -4.6230 1.3844 32 1 5.0023 -5.9949 2.5023 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222704805.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:11 Heat of formation + Delta-G solvation = -65.163898 kcal Electronic energy + Delta-G solvation = -13947.120963 eV Core-core repulsion = 11678.312525 eV Total energy + Delta-G solvation = -2268.808438 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.09544 -36.89134 -34.07869 -32.26480 -29.18129 -29.11557 -25.49053 -24.12260 -22.04174 -20.63671 -19.34086 -18.01937 -16.18792 -15.94525 -14.92564 -14.69573 -14.39939 -13.96400 -13.62625 -13.23405 -12.30656 -12.07075 -11.68006 -11.36954 -11.27833 -11.04041 -10.90313 -10.83702 -10.61257 -10.60214 -10.42920 -10.30458 -10.06431 -9.36586 -8.99044 -8.46056 -8.14217 -5.90695 -3.89991 2.79790 3.41446 3.44545 3.49855 4.50843 4.57129 4.66318 4.77388 5.16209 5.37253 5.44876 5.47454 5.55797 5.63218 5.68403 5.76804 5.86508 5.95937 6.02466 6.12467 6.19394 6.24377 6.38897 6.48879 6.52624 6.72941 6.92772 7.65293 7.74347 8.06718 8.39922 8.49130 9.13203 9.72351 11.21098 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.049442 B = 0.008860 C = 0.008241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.186367 B = 3159.450280 C = 3396.962718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.503 4.503 8 H 0.055 0.945 9 C 0.036 3.964 10 C -0.140 4.140 11 H 0.094 0.906 12 C -0.113 4.113 13 C -0.089 4.089 14 H 0.085 0.915 15 C -0.122 4.122 16 C -0.123 4.123 17 C -0.109 4.109 18 C -0.156 4.156 19 H 0.095 0.905 20 C 0.377 3.623 21 O -0.424 6.424 22 H 0.259 0.741 23 H 0.024 0.976 24 H 0.016 0.984 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.134 -13.843 -0.141 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.542 4.542 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.159 4.159 11 H 0.112 0.888 12 C -0.151 4.151 13 C -0.107 4.107 14 H 0.104 0.896 15 C -0.160 4.160 16 C -0.160 4.160 17 C -0.146 4.146 18 C -0.175 4.175 19 H 0.113 0.887 20 C 0.249 3.751 21 O -0.294 6.294 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.035 0.965 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.176 -13.202 0.242 14.577 hybrid contribution 0.386 0.889 0.056 0.971 sum 6.562 -12.313 0.298 13.955 Atomic orbital electron populations 1.69950 1.05980 1.26540 1.51662 1.24966 0.94812 0.99155 0.95580 0.86665 0.79596 0.83200 0.78619 1.20357 1.21409 1.20218 1.21121 0.92998 0.90671 1.49377 0.92671 1.19012 0.93070 0.90452 0.97573 1.22639 0.99722 0.96947 0.96552 0.88845 1.22468 0.97735 0.93998 1.00889 1.22620 0.95956 0.97712 0.94429 0.89623 1.22593 0.94270 1.01723 0.97371 1.22358 0.98449 0.98924 0.96318 1.21974 0.94295 0.99586 0.98786 1.22939 0.96919 0.97205 1.00476 0.88714 1.24808 0.74138 0.88668 0.87493 1.90385 1.41099 1.44917 1.53031 0.93114 0.95783 0.96521 0.91010 0.91255 0.91616 0.90720 0.91756 0.91769 0.91611 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.29 55.43 0.74 -27.14 16 2 C 0.05 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.88 29.54 -169.99 -5.02 17.86 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.50 -14.77 8.04 -34.44 -0.28 -15.05 16 8 H 0.06 1.62 7.53 -52.48 -0.40 1.23 16 9 C 0.04 0.94 4.41 -27.89 -0.12 0.81 16 10 C -0.14 -2.84 2.29 -90.31 -0.21 -3.04 16 11 H 0.09 1.86 7.18 -51.93 -0.37 1.49 16 12 C -0.11 -1.78 5.72 -24.91 -0.14 -1.93 16 13 C -0.09 -1.16 3.98 -87.74 -0.35 -1.51 16 14 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 15 C -0.12 -1.44 6.12 -24.87 -0.15 -1.59 16 16 C -0.12 -1.35 6.83 -25.12 -0.17 -1.52 16 17 C -0.11 -1.43 6.41 -25.66 -0.16 -1.60 16 18 C -0.16 -2.36 3.67 -89.91 -0.33 -2.69 16 19 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 20 C 0.38 7.69 6.21 -28.19 -0.17 7.51 16 21 O -0.42 -10.48 16.67 5.99 0.10 -10.38 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.02 0.47 8.13 -51.93 -0.42 0.05 16 25 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 26 H 0.07 1.11 8.05 -51.93 -0.42 0.70 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.97 6.63 -51.93 -0.34 0.62 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.97 7.63 -51.93 -0.40 0.57 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 258.47 15.07 3.90 3.90 Total: -1.00 -32.39 258.47 -7.34 -39.73 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: -4.86 Total: -4.91 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -2.19 Total: -19.06 kcal Atomic # 7 Polarization: -27.87 SS G_CDS: 0.74 Total: -27.14 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.10 Total: -10.38 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.39 -7.34 -39.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222704805.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.429 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds