Wall clock time and date at job start Mon Mar 30 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00051 * 2 1 4 4 C 1.50699 * 109.47459 * 66.04872 * 3 2 1 5 5 H 1.08005 * 119.99642 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00502 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00044 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00146 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 89.99876 * 8 6 4 10 10 H 1.48506 * 109.46949 * 209.99512 * 8 6 4 11 11 H 1.48496 * 109.47030 * 329.99575 * 8 6 4 12 12 C 1.39200 * 110.99943 * 236.04701 * 2 1 3 13 13 N 1.32402 * 120.13889 * 60.52435 * 12 2 1 14 14 C 1.32449 * 119.99398 * 180.02562 * 13 12 2 15 15 C 1.37894 * 120.28471 * 359.97438 * 14 13 12 16 16 N 1.32455 * 120.27863 * 0.02562 * 15 14 13 17 17 C 1.32401 * 119.99092 * 359.97438 * 16 15 14 18 18 N 1.39201 * 120.13344 * 179.97438 * 17 16 15 19 19 H 1.09004 * 109.47276 * 178.13697 * 1 2 3 20 20 H 1.09003 * 109.46873 * 298.13378 * 1 2 3 21 21 H 1.08992 * 109.47181 * 58.13013 * 1 2 3 22 22 H 1.09006 * 109.47419 * 186.04959 * 3 2 1 23 23 H 1.08998 * 109.47390 * 306.04872 * 3 2 1 24 24 H 0.97000 * 120.00100 * 180.02562 * 7 6 4 25 25 H 1.08003 * 119.85554 * 180.27461 * 14 13 12 26 26 H 1.08002 * 119.86172 * 179.97438 * 15 14 13 27 27 H 0.97004 * 120.00297 * 354.01570 * 18 17 16 28 28 H 0.96999 * 120.00261 * 174.01303 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0747 1.5112 2.0488 6 6 2.0268 3.3494 1.5285 7 7 2.7120 4.0019 0.6150 8 14 1.5831 4.1867 3.1383 9 1 2.6606 3.9506 4.1326 10 1 1.4303 5.6463 2.9114 11 1 0.3058 3.6290 3.6507 12 6 1.9678 -0.7258 -1.0780 13 7 1.6801 -0.3584 -2.3170 14 6 2.1558 -1.0514 -3.3406 15 6 2.9518 -2.1561 -3.1225 16 7 3.2466 -2.5335 -1.8876 17 6 2.7769 -1.8488 -0.8563 18 7 3.0844 -2.2431 0.4428 19 1 -0.3634 -1.0271 -0.0334 20 1 -0.3633 0.4846 0.9063 21 1 -0.3633 0.5426 -0.8727 22 1 3.0798 1.3444 -0.1083 23 1 1.5611 1.9274 -0.8309 24 1 2.9866 4.9180 0.7770 25 1 1.9233 -0.7470 -4.3504 26 1 3.3357 -2.7164 -3.9622 27 1 3.5702 -3.0685 0.5970 28 1 2.8130 -1.6926 1.1939 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226564784.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:55 Heat of formation + Delta-G solvation = 36.628760 kcal Electronic energy + Delta-G solvation = -13429.214766 eV Core-core repulsion = 11093.572797 eV Total energy + Delta-G solvation = -2335.641970 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.98074 -38.20920 -36.19280 -34.86329 -33.54323 -30.30373 -29.20405 -27.17883 -25.21119 -24.27954 -22.48565 -19.27078 -18.60362 -18.29116 -17.49060 -16.78375 -16.30549 -16.01861 -15.48315 -15.02570 -14.86909 -14.31546 -13.91274 -13.24400 -12.90904 -12.62587 -12.58788 -12.43472 -12.40468 -12.07003 -11.51064 -11.23428 -10.64396 -10.18650 -9.40550 -8.77313 -8.21197 -6.33438 0.04498 0.40726 1.43559 1.45369 1.56652 2.39480 2.52424 2.88325 2.96434 3.12597 3.58999 3.70816 4.08977 4.43397 4.49259 4.54659 4.72360 4.97969 5.14619 5.18692 5.37016 5.64580 5.95023 6.04891 6.09756 6.45313 6.64789 6.80635 6.85602 7.20989 7.36770 8.90570 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.049055 B = 0.008480 C = 0.008139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.652306 B = 3301.233563 C = 3439.449739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.479 5.479 3 C 0.226 3.774 4 C -0.524 4.524 5 H 0.075 0.925 6 C 0.001 3.999 7 N -0.938 5.938 8 Si 0.976 3.024 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.259 1.259 12 C 0.166 3.834 13 N -0.468 5.468 14 C -0.025 4.025 15 C 0.099 3.901 16 N -0.517 5.517 17 C 0.374 3.626 18 N -0.817 5.817 19 H 0.068 0.932 20 H 0.076 0.924 21 H 0.014 0.986 22 H -0.011 1.011 23 H -0.033 1.033 24 H 0.264 0.736 25 H 0.190 0.810 26 H 0.213 0.787 27 H 0.411 0.589 28 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.950 -12.071 -3.269 12.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.203 5.203 3 C 0.100 3.900 4 C -0.562 4.562 5 H 0.093 0.907 6 C -0.197 4.197 7 N -0.578 5.578 8 Si 0.800 3.200 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.183 1.183 12 C -0.074 4.074 13 N -0.185 5.185 14 C -0.186 4.186 15 C -0.060 4.060 16 N -0.242 5.242 17 C 0.130 3.870 18 N -0.362 5.362 19 H 0.087 0.913 20 H 0.095 0.905 21 H 0.033 0.967 22 H 0.007 0.993 23 H -0.015 1.015 24 H 0.073 0.927 25 H 0.207 0.793 26 H 0.230 0.770 27 H 0.242 0.758 28 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -0.731 -12.130 -2.872 12.487 hybrid contribution -0.164 1.209 0.056 1.221 sum -0.895 -10.921 -2.816 11.314 Atomic orbital electron populations 1.22133 0.85751 1.00671 1.01001 1.60189 1.09301 1.16086 1.34684 1.19282 0.92645 0.82317 0.95748 1.21455 1.35307 0.97605 1.01876 0.90655 1.25994 0.94809 0.98020 1.00906 1.70129 1.39279 1.11944 1.36432 0.85277 0.79178 0.77016 0.78489 1.19699 1.21183 1.18265 1.20615 1.01230 0.96660 0.88915 1.68362 1.20410 1.29174 1.00550 1.23754 1.00302 0.95553 0.99035 1.24024 0.93090 0.94665 0.94233 1.68087 1.24871 1.31749 0.99462 1.19107 0.89929 0.89511 0.88480 1.42117 1.62959 1.28452 1.02659 0.91308 0.90502 0.96734 0.99284 1.01504 0.92688 0.79327 0.77017 0.75756 0.74600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.11 9.14 127.69 1.17 3.28 15 2 N -0.48 -21.48 3.92 -729.81 -2.86 -24.34 15 3 C 0.23 12.51 4.52 85.56 0.39 12.89 15 4 C -0.52 -29.43 8.54 25.60 0.22 -29.21 15 5 H 0.08 3.99 7.10 -2.91 -0.02 3.97 15 6 C 0.00 0.04 5.46 84.65 0.46 0.50 15 7 N -0.94 -57.47 13.29 21.44 0.28 -57.19 15 8 Si 0.98 43.75 29.54 68.60 2.03 45.77 15 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 10 H -0.29 -12.69 7.11 99.48 0.71 -11.98 15 11 H -0.26 -10.92 7.11 99.48 0.71 -10.21 15 12 C 0.17 6.90 5.30 133.25 0.71 7.61 15 13 N -0.47 -19.04 9.98 -192.05 -1.92 -20.95 15 14 C -0.03 -0.76 11.20 84.52 0.95 0.19 15 15 C 0.10 2.57 11.20 84.52 0.95 3.52 15 16 N -0.52 -16.23 10.52 -192.05 -2.02 -18.25 15 17 C 0.37 13.30 7.80 133.25 1.04 14.34 15 18 N -0.82 -24.07 9.06 -54.64 -0.50 -24.57 15 19 H 0.07 2.39 8.11 -2.39 -0.02 2.37 15 20 H 0.08 3.11 6.91 -2.39 -0.02 3.09 15 21 H 0.01 0.61 8.01 -2.39 -0.02 0.59 15 22 H -0.01 -0.68 8.06 -2.38 -0.02 -0.69 15 23 H -0.03 -2.05 8.11 -2.39 -0.02 -2.07 15 24 H 0.26 15.20 8.31 -92.71 -0.77 14.43 15 25 H 0.19 4.19 8.06 -2.91 -0.02 4.16 15 26 H 0.21 3.19 8.06 -2.91 -0.02 3.17 15 27 H 0.41 9.51 8.96 -92.71 -0.83 8.68 15 28 H 0.42 12.91 8.13 -92.71 -0.75 12.16 15 Total: -1.00 -70.27 248.60 0.49 -69.78 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -0.40 Total: 16.64 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 5.87 Total: 13.11 kcal Atomic # 7 Polarization: -138.29 SS G_CDS: -7.01 Total: -145.30 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -70.27 0.49 -69.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226564784.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.405 kcal (2) G-P(sol) polarization free energy of solvation -70.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds