Wall clock time and date at job start Mon Mar 30 2020 02:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.34129 * 125.70648 * 124.99784 * 3 2 1 5 5 C 1.38452 * 107.36839 * 180.02562 * 4 3 2 6 6 C 1.46671 * 126.47465 * 179.97438 * 5 4 3 7 7 O 1.21319 * 119.99952 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00275 * 180.02562 * 6 5 4 9 9 C 1.50699 * 109.47246 * 180.02562 * 8 6 5 10 10 H 1.08004 * 120.00053 * 0.02562 * 9 8 6 11 11 C 1.37878 * 120.00086 * 179.97438 * 9 8 6 12 12 N 1.31514 * 119.99606 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 119.99787 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47377 * 90.00007 * 13 11 9 15 15 H 1.48498 * 109.47022 * 209.99766 * 13 11 9 16 16 H 1.48505 * 109.47302 * 329.99294 * 13 11 9 17 17 C 1.41554 * 107.05190 * 0.02562 * 5 4 3 18 18 N 1.30366 * 107.98121 * 359.71372 * 17 5 4 19 19 H 1.09000 * 109.47050 * 299.99945 * 1 2 3 20 20 H 1.09001 * 109.46801 * 60.00058 * 1 2 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 120.00226 * 2 1 3 23 23 H 1.09000 * 109.47050 * 240.00054 * 2 1 3 24 24 H 1.07998 * 126.31530 * 359.97438 * 4 3 2 25 25 H 1.09003 * 109.46527 * 300.00210 * 8 6 5 26 26 H 1.08996 * 109.47079 * 60.00175 * 8 6 5 27 27 H 0.97003 * 119.99292 * 180.02562 * 12 11 9 28 28 H 1.08005 * 126.00767 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8682 1.9111 0.8922 5 6 3.0703 3.2336 0.5357 6 6 3.9263 4.2023 1.2285 7 8 4.5433 3.8679 2.2180 8 6 4.0394 5.6132 0.7112 9 6 4.9735 6.3990 1.5949 10 1 5.4391 5.9241 2.4459 11 6 5.2346 7.7239 1.3165 12 7 6.0495 8.4097 2.0881 13 14 4.4299 8.5451 -0.1556 14 1 3.1358 9.1446 0.2580 15 1 5.3237 9.6094 -0.6786 16 1 4.1905 7.5341 -1.2168 17 6 2.2937 3.4744 -0.6230 18 7 1.6798 2.3670 -0.9334 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 3.3123 1.4005 1.7339 25 1 4.4301 5.5968 -0.3063 26 1 3.0552 6.0816 0.7149 27 1 6.2328 9.3419 1.8925 28 1 2.2260 4.4097 -1.1590 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234185110.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:42 Heat of formation + Delta-G solvation = 32.878493 kcal Electronic energy + Delta-G solvation = -12904.158535 eV Core-core repulsion = 10536.061190 eV Total energy + Delta-G solvation = -2368.097345 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.08480 -37.87015 -34.53532 -32.77639 -30.43524 -30.27518 -28.87467 -24.53116 -23.39060 -21.52032 -20.42289 -18.65452 -17.08927 -16.50992 -15.59750 -14.72564 -14.54469 -14.25459 -14.00244 -13.63547 -13.42743 -12.63351 -12.54937 -12.32792 -12.11518 -11.67106 -11.40460 -10.87616 -10.59803 -10.48271 -9.87215 -9.44502 -9.19888 -8.54772 -8.51660 -8.37874 -5.97733 -3.96802 1.73273 2.40382 2.43889 3.32486 3.39562 3.40683 3.88350 4.30279 4.47182 4.69017 4.83375 4.93598 4.97117 5.27268 5.34239 5.44448 5.48960 5.69899 5.77233 5.86943 6.58646 6.72321 6.86328 6.95878 7.05569 7.70799 7.72877 8.54775 8.76115 9.19394 9.61665 11.15565 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.060579 B = 0.007101 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.099082 B = 3942.016973 C = 4326.567701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 N -0.368 5.368 4 C 0.109 3.891 5 C -0.307 4.307 6 C 0.431 3.569 7 O -0.468 6.468 8 C -0.053 4.053 9 C -0.517 4.517 10 H 0.089 0.911 11 C 0.067 3.933 12 N -0.900 5.900 13 Si 0.874 3.126 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.264 1.264 17 C 0.092 3.908 18 N -0.308 5.308 19 H 0.061 0.939 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.096 0.904 23 H 0.085 0.915 24 H 0.183 0.817 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.263 0.737 28 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.669 -15.249 -6.192 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.006 3.994 3 N -0.148 5.148 4 C -0.041 4.041 5 C -0.319 4.319 6 C 0.309 3.691 7 O -0.343 6.343 8 C -0.090 4.090 9 C -0.554 4.554 10 H 0.107 0.893 11 C -0.134 4.134 12 N -0.539 5.539 13 Si 0.701 3.299 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.189 1.189 17 C -0.095 4.095 18 N -0.129 5.129 19 H 0.080 0.920 20 H 0.090 0.910 21 H 0.092 0.908 22 H 0.115 0.885 23 H 0.103 0.897 24 H 0.200 0.800 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.117 -15.972 -6.467 20.506 hybrid contribution 0.135 0.956 -0.261 1.000 sum -10.982 -15.016 -6.728 19.783 Atomic orbital electron populations 1.22052 0.93689 1.02763 1.03772 1.21733 0.96216 0.77522 1.03883 1.48556 1.34988 1.10419 1.20849 1.23233 0.92046 0.94344 0.94503 1.21573 1.11219 0.95742 1.03394 1.21891 0.75880 0.89390 0.81952 1.90407 1.39465 1.80643 1.23791 1.19926 0.99113 0.91125 0.98882 1.21070 1.26071 0.95247 1.13051 0.89289 1.24997 0.94936 0.97122 0.96315 1.69910 1.36205 1.09322 1.38499 0.86875 0.79612 0.79611 0.83754 1.20162 1.21283 1.18871 1.24226 0.93345 0.96985 0.94984 1.77016 1.24818 0.97415 1.13606 0.91977 0.90990 0.90751 0.88543 0.89659 0.80007 0.93140 0.93578 0.92714 0.79084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 10.09 37.16 0.37 -0.89 15 2 C 0.13 1.07 7.20 -4.04 -0.03 1.04 15 3 N -0.37 -4.85 3.64 -60.73 -0.22 -5.07 15 4 C 0.11 1.60 11.25 -16.47 -0.19 1.42 15 5 C -0.31 -5.48 6.11 -105.15 -0.64 -6.12 15 6 C 0.43 9.61 7.12 -30.91 -0.22 9.39 15 7 O -0.47 -11.85 16.01 5.52 0.09 -11.76 15 8 C -0.05 -1.27 4.01 -29.04 -0.12 -1.39 15 9 C -0.52 -15.26 9.48 -34.44 -0.33 -15.59 15 10 H 0.09 2.95 7.00 -52.48 -0.37 2.59 15 11 C 0.07 1.98 5.47 -17.82 -0.10 1.89 15 12 N -0.90 -28.28 13.96 55.43 0.77 -27.51 15 13 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 15 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 16 H -0.26 -5.91 6.54 56.52 0.37 -5.54 15 17 C 0.09 1.47 11.55 -16.91 -0.20 1.27 15 18 N -0.31 -4.71 12.32 30.91 0.38 -4.33 15 19 H 0.06 0.53 8.14 -51.93 -0.42 0.11 15 20 H 0.07 0.66 8.14 -51.93 -0.42 0.23 15 21 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 15 22 H 0.10 0.57 8.06 -51.93 -0.42 0.15 15 23 H 0.09 0.63 8.14 -51.93 -0.42 0.20 15 24 H 0.18 2.24 8.06 -52.49 -0.42 1.82 15 25 H 0.05 1.15 7.20 -51.93 -0.37 0.78 15 26 H 0.05 1.03 7.57 -51.93 -0.39 0.64 15 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 28 H 0.19 2.64 8.04 -52.48 -0.42 2.21 15 LS Contribution 253.23 15.07 3.82 3.82 Total: -1.00 -35.01 253.23 -4.52 -39.54 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -3.26 Total: -2.19 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -1.44 Total: -8.99 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.93 Total: -36.91 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -35.01 -4.52 -39.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234185110.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.415 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds