Wall clock time and date at job start Mon Mar 30 2020 02:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35738 * 117.00413 * 2 1 4 4 C 1.39293 * 120.84502 * 359.97438 * 3 2 1 5 5 C 1.37947 * 119.09273 * 180.02562 * 4 3 2 6 6 N 1.31984 * 120.82172 * 359.72651 * 5 4 3 7 7 C 1.31942 * 121.86310 * 0.56437 * 6 5 4 8 8 C 1.50697 * 119.58662 * 179.70999 * 7 6 5 9 9 H 1.08999 * 109.47706 * 64.73055 * 8 7 6 10 10 N 1.46906 * 109.47064 * 184.72851 * 8 7 6 11 11 C 1.50701 * 109.47065 * 304.72860 * 8 7 6 12 12 H 1.08001 * 120.00367 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99893 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99827 * 180.02562 * 13 11 8 15 15 Si 1.86799 * 120.00046 * 359.97438 * 13 11 8 16 16 H 1.48503 * 109.47155 * 90.00195 * 15 13 11 17 17 H 1.48498 * 109.47312 * 210.00202 * 15 13 11 18 18 H 1.48507 * 109.47130 * 330.00611 * 15 13 11 19 19 C 1.37994 * 120.82240 * 359.43856 * 7 6 5 20 20 H 1.08999 * 109.46885 * 59.99463 * 1 2 3 21 21 H 1.08997 * 109.47340 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46717 * 300.00163 * 1 2 3 23 23 H 1.08004 * 120.45282 * 0.02562 * 4 3 2 24 24 H 1.07996 * 119.58942 * 179.97438 * 5 4 3 25 25 H 1.00896 * 111.00309 * 296.04459 * 10 8 7 26 26 H 1.00902 * 110.99923 * 60.00622 * 10 8 7 27 27 H 0.97006 * 119.99800 * 179.97438 * 14 13 11 28 28 H 1.07997 * 120.45283 * 180.29971 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3041 2.3887 -0.0005 5 6 1.9677 3.5981 -0.0011 6 7 3.2867 3.6456 0.0044 7 6 4.0232 2.5509 -0.0006 8 6 5.5258 2.6650 -0.0006 9 1 5.8553 3.1260 0.9305 10 7 6.1186 1.3262 -0.1207 11 6 5.9650 3.5152 -1.1649 12 1 5.2295 3.9316 -1.8373 13 6 7.3058 3.7614 -1.3717 14 7 7.6890 4.5037 -2.3874 15 14 8.5779 3.0418 -0.2083 16 1 9.0014 1.7069 -0.7022 17 1 9.7565 3.9429 -0.1448 18 1 7.9869 2.9034 1.1471 19 6 3.4346 1.3028 -0.0001 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2245 2.3567 -0.0005 24 1 1.4010 4.5173 -0.0019 25 1 5.8917 0.7570 0.6808 26 1 5.8282 0.8777 -0.9767 27 1 8.6323 4.6772 -2.5326 28 1 4.0432 0.4106 0.0007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238386059.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:28 Heat of formation + Delta-G solvation = -22.113510 kcal Electronic energy + Delta-G solvation = -13313.493920 eV Core-core repulsion = 10943.011943 eV Total energy + Delta-G solvation = -2370.481977 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.59991 -39.38185 -36.66865 -34.06898 -32.44281 -31.34486 -28.59355 -28.26567 -24.88343 -24.10162 -21.91254 -19.08867 -18.94254 -17.87606 -16.89824 -16.70716 -16.64926 -15.97877 -15.82686 -15.23281 -14.71050 -14.61272 -14.28007 -13.68143 -13.23217 -12.65929 -12.57194 -12.39853 -12.05953 -11.78384 -11.50113 -10.73357 -10.34867 -9.93529 -9.81735 -9.47111 -8.20816 -6.33187 0.18343 0.43688 1.54005 1.61416 1.74482 2.17418 2.55993 2.88805 3.12585 3.55532 3.73796 3.94004 4.13541 4.25496 4.33303 4.37101 4.43001 4.67386 4.78169 4.82964 5.02967 5.07216 5.56325 5.60974 6.14843 6.25240 6.36946 6.76581 6.92600 7.30046 7.40898 8.93009 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.054336 B = 0.008727 C = 0.007994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.185027 B = 3207.841446 C = 3501.794715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.164 3.836 4 C -0.268 4.268 5 C 0.123 3.877 6 N -0.532 5.532 7 C 0.149 3.851 8 C 0.233 3.767 9 H 0.053 0.947 10 N -0.836 5.836 11 C -0.501 4.501 12 H 0.027 0.973 13 C 0.023 3.977 14 N -0.950 5.950 15 Si 1.004 2.996 16 H -0.271 1.271 17 H -0.323 1.323 18 H -0.260 1.260 19 C -0.231 4.231 20 H 0.066 0.934 21 H 0.125 0.875 22 H 0.071 0.929 23 H 0.173 0.827 24 H 0.180 0.820 25 H 0.337 0.663 26 H 0.344 0.656 27 H 0.265 0.735 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.059 -9.848 7.277 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.111 3.889 4 C -0.289 4.289 5 C -0.034 4.034 6 N -0.245 5.245 7 C 0.011 3.989 8 C 0.123 3.877 9 H 0.071 0.929 10 N -0.369 5.369 11 C -0.540 4.540 12 H 0.045 0.955 13 C -0.175 4.175 14 N -0.590 5.590 15 Si 0.834 3.166 16 H -0.197 1.197 17 H -0.254 1.254 18 H -0.185 1.185 19 C -0.252 4.252 20 H 0.085 0.915 21 H 0.143 0.857 22 H 0.089 0.911 23 H 0.190 0.810 24 H 0.197 0.803 25 H 0.152 0.848 26 H 0.159 0.841 27 H 0.073 0.927 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.759 -8.863 7.204 17.882 hybrid contribution -0.892 -0.848 -0.043 1.232 sum -14.652 -9.711 7.160 18.980 Atomic orbital electron populations 1.23464 0.75664 1.06074 1.02696 1.86037 1.24172 1.25696 1.87853 1.19328 0.91981 0.85517 0.92104 1.22422 1.02706 0.92160 1.11617 1.23183 0.89651 0.98766 0.91837 1.67571 1.08053 1.33282 1.15605 1.22414 0.98661 0.87809 0.90007 1.18253 0.83579 0.88672 0.97243 0.92937 1.59069 1.65208 1.04978 1.07636 1.20761 0.92243 1.29870 1.11105 0.95491 1.25897 1.01016 0.93907 0.96682 1.70090 1.16866 1.40233 1.31814 0.84796 0.75301 0.76706 0.79845 1.19700 1.25371 1.18501 1.21336 0.93189 0.99419 1.11292 0.91531 0.85684 0.91083 0.81010 0.80267 0.84801 0.84131 0.92660 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.84 113.37 1.12 1.33 15 2 O -0.33 -8.19 10.51 -90.61 -0.95 -9.14 15 3 C 0.16 4.98 6.74 22.76 0.15 5.13 15 4 C -0.27 -7.22 9.11 22.45 0.20 -7.02 15 5 C 0.12 4.01 11.17 84.60 0.95 4.96 15 6 N -0.53 -23.14 9.97 -184.13 -1.84 -24.97 15 7 C 0.15 6.43 6.10 42.48 0.26 6.69 15 8 C 0.23 11.20 2.59 43.42 0.11 11.31 15 9 H 0.05 2.64 7.20 -2.39 -0.02 2.62 15 10 N -0.84 -33.88 6.06 -174.95 -1.06 -34.94 15 11 C -0.50 -29.74 9.11 25.60 0.23 -29.51 15 12 H 0.03 1.81 7.93 -2.91 -0.02 1.79 15 13 C 0.02 1.41 5.47 84.66 0.46 1.87 15 14 N -0.95 -61.51 13.96 21.45 0.30 -61.21 15 15 Si 1.00 49.99 26.03 68.60 1.79 51.78 15 16 H -0.27 -13.03 7.11 99.48 0.71 -12.32 15 17 H -0.32 -16.25 7.11 99.48 0.71 -15.54 15 18 H -0.26 -12.23 6.54 99.48 0.65 -11.57 15 19 C -0.23 -8.24 9.03 22.45 0.20 -8.04 15 20 H 0.07 0.83 7.71 -2.39 -0.02 0.82 15 21 H 0.13 1.14 8.14 -2.39 -0.02 1.12 15 22 H 0.07 0.82 7.71 -2.39 -0.02 0.80 15 23 H 0.17 3.05 6.47 -2.91 -0.02 3.03 15 24 H 0.18 4.51 8.06 -2.91 -0.02 4.49 15 25 H 0.34 11.12 8.09 -89.70 -0.73 10.40 15 26 H 0.34 13.51 8.26 -89.69 -0.74 12.77 15 27 H 0.26 16.07 8.31 -92.70 -0.77 15.30 15 28 H 0.15 4.67 6.19 -2.91 -0.02 4.65 15 Total: -1.00 -75.01 240.51 1.60 -73.42 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -0.33 Total: 18.34 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 3.69 Total: -13.28 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -2.60 Total: -121.12 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.95 Total: -9.14 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 1.79 Total: 51.78 kcal Total: -75.01 1.60 -73.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238386059.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.302 kcal (2) G-P(sol) polarization free energy of solvation -75.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds