Wall clock time and date at job start Mon Mar 30 2020 02:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35735 * 117.00069 * 2 1 4 4 C 1.39283 * 120.84671 * 359.97438 * 3 2 1 5 5 C 1.37945 * 119.09473 * 180.02562 * 4 3 2 6 6 N 1.31975 * 120.82555 * 0.02562 * 5 4 3 7 7 C 1.31954 * 121.86082 * 359.97438 * 6 5 4 8 8 C 1.37995 * 120.82152 * 0.02562 * 7 6 5 9 9 C 1.50692 * 120.45059 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46811 * 219.99479 * 9 8 7 11 11 N 1.46896 * 109.47404 * 339.99072 * 9 8 7 12 12 C 1.50702 * 109.47433 * 99.99969 * 9 8 7 13 13 H 1.07995 * 119.99756 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99926 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99917 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99600 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47342 * 59.99957 * 16 14 12 18 18 H 1.48502 * 109.46832 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47189 * 299.99426 * 16 14 12 20 20 H 1.09003 * 109.46975 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47385 * 300.00176 * 1 2 3 22 22 H 1.09006 * 109.46722 * 60.00525 * 1 2 3 23 23 H 1.07999 * 120.45629 * 0.02675 * 4 3 2 24 24 H 1.08008 * 119.59264 * 180.02562 * 5 4 3 25 25 H 1.07998 * 119.58627 * 179.72120 * 7 6 5 26 26 H 1.00903 * 110.99841 * 60.00840 * 11 9 8 27 27 H 1.00900 * 111.00209 * 183.95316 * 11 9 8 28 28 H 0.97001 * 119.99560 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3886 -0.0005 5 6 1.9676 3.5980 -0.0011 6 7 3.2865 3.6457 -0.0016 7 6 4.0231 2.5509 -0.0011 8 6 3.4346 1.3028 -0.0006 9 6 4.2838 0.0580 -0.0006 10 1 3.8380 -0.6860 -0.6608 11 7 5.6346 0.3867 -0.4751 12 6 4.3638 -0.4958 1.3987 13 1 3.8512 0.0040 2.2073 14 6 5.0913 -1.6404 1.6466 15 7 5.7151 -2.2493 0.6619 16 14 5.1909 -2.3264 3.3813 17 1 3.8254 -2.6580 3.8616 18 1 6.0267 -3.5538 3.3810 19 1 5.7993 -1.3130 4.2801 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 0.2245 2.3566 -0.0005 24 1 1.4008 4.5174 -0.0011 25 1 5.0999 2.6328 -0.0061 26 1 6.0697 1.0750 0.1209 27 1 6.2050 -0.4426 -0.5456 28 1 6.2266 -3.0548 0.8363 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238387386.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:30 Heat of formation + Delta-G solvation = -26.451011 kcal Electronic energy + Delta-G solvation = -13584.980309 eV Core-core repulsion = 11214.310244 eV Total energy + Delta-G solvation = -2370.670065 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.48174 -39.00671 -36.84585 -33.72862 -32.11663 -31.13475 -28.27361 -28.03278 -25.18002 -23.63516 -22.04621 -19.24846 -18.62497 -17.93947 -16.86792 -16.63123 -16.03342 -15.73706 -15.56736 -14.90575 -14.78948 -14.31229 -14.11784 -13.28036 -13.05315 -12.85899 -12.74259 -12.35377 -12.29726 -12.01864 -11.63046 -10.77167 -10.31146 -9.92839 -9.54655 -9.19041 -8.11582 -6.36056 0.32266 0.54053 1.37304 1.37467 1.46221 2.36402 2.42038 3.01969 3.05584 3.68702 3.84975 4.03524 4.30951 4.38314 4.39862 4.54060 4.69230 4.76237 4.86025 5.03285 5.18473 5.62148 5.65425 5.79978 6.05077 6.48400 6.62788 6.88500 7.08093 7.19964 7.38697 8.83553 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032417 B = 0.011429 C = 0.009862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.547426 B = 2449.243696 C = 2838.371131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.147 3.853 4 C -0.257 4.257 5 C 0.109 3.891 6 N -0.527 5.527 7 C 0.122 3.878 8 C -0.149 4.149 9 C 0.263 3.737 10 H 0.010 0.990 11 N -0.842 5.842 12 C -0.548 4.548 13 H 0.039 0.961 14 C 0.023 3.977 15 N -0.916 5.916 16 Si 0.958 3.042 17 H -0.277 1.277 18 H -0.278 1.278 19 H -0.272 1.272 20 H 0.111 0.889 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.169 0.831 24 H 0.192 0.808 25 H 0.159 0.841 26 H 0.319 0.681 27 H 0.348 0.652 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.528 6.324 -0.079 11.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.093 3.907 4 C -0.277 4.277 5 C -0.049 4.049 6 N -0.239 5.239 7 C -0.033 4.033 8 C -0.152 4.152 9 C 0.152 3.848 10 H 0.028 0.972 11 N -0.372 5.372 12 C -0.588 4.588 13 H 0.057 0.943 14 C -0.177 4.177 15 N -0.556 5.556 16 Si 0.783 3.217 17 H -0.202 1.202 18 H -0.204 1.204 19 H -0.197 1.197 20 H 0.130 0.870 21 H 0.087 0.913 22 H 0.092 0.908 23 H 0.187 0.813 24 H 0.209 0.791 25 H 0.176 0.824 26 H 0.130 0.870 27 H 0.162 0.838 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.298 6.981 -0.809 11.655 hybrid contribution -0.099 -1.906 1.718 2.568 sum -9.397 5.074 0.909 10.718 Atomic orbital electron populations 1.23398 0.76510 1.05398 1.02570 1.86217 1.23471 1.26620 1.87536 1.19461 0.91989 0.85625 0.93644 1.22414 1.02499 0.91988 1.10839 1.23064 0.89953 0.98124 0.93719 1.67722 1.08294 1.31805 1.16108 1.22402 1.00509 0.86103 0.94244 1.20852 0.92393 0.98371 1.03603 1.17393 0.86746 0.88018 0.92681 0.97165 1.59511 1.05627 1.17181 1.54871 1.21831 1.31491 1.10630 0.94822 0.94316 1.25703 0.94866 0.96239 1.00903 1.69829 1.33141 1.19912 1.32682 0.85621 0.78007 0.77838 0.80196 1.20216 1.20353 1.19738 0.87049 0.91312 0.90836 0.81321 0.79106 0.82371 0.87012 0.83753 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.84 113.37 1.12 1.50 15 2 O -0.33 -13.14 9.86 -90.58 -0.89 -14.03 15 3 C 0.15 5.94 6.70 22.76 0.15 6.10 15 4 C -0.26 -7.89 9.11 22.45 0.20 -7.68 15 5 C 0.11 3.28 11.17 84.60 0.95 4.23 15 6 N -0.53 -19.55 10.36 -196.08 -2.03 -21.59 15 7 C 0.12 5.07 10.42 84.62 0.88 5.96 15 8 C -0.15 -6.85 5.05 -19.68 -0.10 -6.95 15 9 C 0.26 13.88 2.66 43.42 0.12 13.99 15 10 H 0.01 0.63 7.92 -2.39 -0.02 0.61 15 11 N -0.84 -41.53 8.67 -174.97 -1.52 -43.04 15 12 C -0.55 -30.71 8.71 25.60 0.22 -30.49 15 13 H 0.04 2.22 7.74 -2.91 -0.02 2.19 15 14 C 0.02 1.26 5.38 84.66 0.46 1.72 15 15 N -0.92 -51.72 11.54 21.45 0.25 -51.48 15 16 Si 0.96 43.73 29.54 68.60 2.03 45.75 15 17 H -0.28 -12.52 7.11 99.48 0.71 -11.82 15 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 15 20 H 0.11 2.41 8.14 -2.39 -0.02 2.40 15 21 H 0.07 1.47 7.71 -2.39 -0.02 1.45 15 22 H 0.07 1.48 7.71 -2.38 -0.02 1.47 15 23 H 0.17 3.67 6.47 -2.91 -0.02 3.65 15 24 H 0.19 3.92 8.06 -2.91 -0.02 3.89 15 25 H 0.16 6.39 6.26 -2.91 -0.02 6.37 15 26 H 0.32 14.68 7.31 -89.69 -0.66 14.02 15 27 H 0.35 18.31 7.08 -89.69 -0.64 17.67 15 28 H 0.27 14.37 8.31 -92.71 -0.77 13.59 15 Total: -1.00 -65.24 243.05 1.73 -63.52 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: -0.10 Total: 32.50 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 3.99 Total: -11.63 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -3.30 Total: -116.11 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.89 Total: -14.03 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -65.24 1.73 -63.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238387386.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.066 kcal (2) G-P(sol) polarization free energy of solvation -65.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds