Wall clock time and date at job start Mon Mar 30 2020 02:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35739 * 117.00364 * 2 1 4 4 C 1.39282 * 120.84217 * 359.71837 * 3 2 1 5 5 C 1.37952 * 119.08859 * 179.77297 * 4 3 2 6 6 N 1.31974 * 120.82616 * 0.51731 * 5 4 3 7 7 C 1.31947 * 121.85957 * 359.73365 * 6 5 4 8 8 C 1.37993 * 120.82448 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.45278 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46934 * 144.97542 * 9 8 7 11 11 N 1.46900 * 109.47513 * 24.97779 * 9 8 7 12 12 C 1.50699 * 109.47418 * 264.97415 * 9 8 7 13 13 H 1.08002 * 119.99485 * 359.97438 * 12 9 8 14 14 C 1.37870 * 120.00462 * 180.02562 * 12 9 8 15 15 N 1.31521 * 119.99862 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 120.00304 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46957 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47131 * 120.00015 * 16 14 12 19 19 H 1.48496 * 109.47298 * 239.99957 * 16 14 12 20 20 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46938 * 59.99827 * 1 2 3 22 22 H 1.09004 * 109.46926 * 299.99948 * 1 2 3 23 23 H 1.08004 * 120.45842 * 0.02562 * 4 3 2 24 24 H 1.08007 * 119.58930 * 180.27204 * 5 4 3 25 25 H 1.08001 * 119.58394 * 179.97438 * 7 6 5 26 26 H 1.00899 * 111.00028 * 176.04564 * 11 9 8 27 27 H 1.00902 * 110.99856 * 299.99754 * 11 9 8 28 28 H 0.97005 * 120.00085 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3041 2.3886 -0.0059 5 6 1.9678 3.5980 -0.0009 6 7 3.2866 3.6456 -0.0009 7 6 4.0231 2.5509 -0.0005 8 6 3.4346 1.3027 -0.0005 9 6 4.2838 0.0579 0.0006 10 1 3.7929 -0.7163 0.5903 11 7 5.5965 0.3610 0.5863 12 6 4.4652 -0.4278 -1.4144 13 1 4.0106 0.1109 -2.2326 14 6 5.2106 -1.5604 -1.6643 15 7 5.7639 -2.2167 -0.6679 16 14 5.4348 -2.1628 -3.4183 17 1 4.7167 -1.2554 -4.3489 18 1 6.8809 -2.1759 -3.7561 19 1 4.8847 -3.5364 -3.5441 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 0.2245 2.3566 -0.0101 24 1 1.4009 4.5174 -0.0009 25 1 5.1000 2.6327 -0.0009 26 1 6.1617 -0.4718 0.6576 27 1 6.0720 1.0765 0.0572 28 1 6.2880 -3.0138 -0.8437 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238387700.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:32 Heat of formation + Delta-G solvation = -27.201427 kcal Electronic energy + Delta-G solvation = -13573.519398 eV Core-core repulsion = 11202.816793 eV Total energy + Delta-G solvation = -2370.702605 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.48713 -39.01482 -36.84905 -33.73220 -32.11893 -31.14444 -28.27159 -28.04227 -25.19064 -23.64900 -22.05131 -19.25332 -18.63622 -17.94742 -16.87435 -16.64218 -16.02219 -15.74416 -15.56762 -14.91127 -14.82395 -14.30393 -14.12515 -13.27753 -13.07030 -12.87581 -12.73904 -12.35961 -12.32247 -11.97580 -11.63791 -10.78308 -10.31077 -9.93300 -9.55822 -9.18695 -8.12384 -6.37292 0.31929 0.53643 1.34705 1.37314 1.48534 2.35901 2.41075 3.01396 3.04888 3.67909 3.84659 4.03379 4.30789 4.38036 4.39835 4.53734 4.69134 4.76296 4.84702 5.02590 5.17917 5.61818 5.66220 5.78987 6.04675 6.47377 6.62360 6.88473 7.08318 7.19263 7.38021 8.82916 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032446 B = 0.011264 C = 0.009859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.768015 B = 2485.142803 C = 2839.463611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.146 3.854 4 C -0.256 4.256 5 C 0.108 3.892 6 N -0.526 5.526 7 C 0.122 3.878 8 C -0.147 4.147 9 C 0.262 3.738 10 H 0.012 0.988 11 N -0.843 5.843 12 C -0.549 4.549 13 H 0.039 0.961 14 C 0.023 3.977 15 N -0.916 5.916 16 Si 0.959 3.041 17 H -0.276 1.276 18 H -0.274 1.274 19 H -0.278 1.278 20 H 0.112 0.888 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.170 0.830 24 H 0.192 0.808 25 H 0.157 0.843 26 H 0.347 0.653 27 H 0.319 0.681 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.559 6.303 0.137 11.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.092 3.908 4 C -0.276 4.276 5 C -0.049 4.049 6 N -0.239 5.239 7 C -0.032 4.032 8 C -0.150 4.150 9 C 0.151 3.849 10 H 0.029 0.971 11 N -0.372 5.372 12 C -0.588 4.588 13 H 0.057 0.943 14 C -0.177 4.177 15 N -0.556 5.556 16 Si 0.785 3.215 17 H -0.200 1.200 18 H -0.200 1.200 19 H -0.204 1.204 20 H 0.130 0.870 21 H 0.087 0.913 22 H 0.092 0.908 23 H 0.187 0.813 24 H 0.209 0.791 25 H 0.175 0.825 26 H 0.162 0.838 27 H 0.130 0.870 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.385 6.930 0.846 11.697 hybrid contribution 0.041 -1.829 -1.721 2.512 sum -9.344 5.100 -0.875 10.682 Atomic orbital electron populations 1.23403 0.76420 1.05442 1.02593 1.86201 1.23562 1.26645 1.87601 1.19459 0.91984 0.85641 0.93751 1.22418 1.02515 0.91970 1.10744 1.23068 0.89933 0.98145 0.93737 1.67712 1.08317 1.31785 1.16075 1.22362 1.00426 0.86151 0.94290 1.20841 0.92378 0.98379 1.03445 1.17416 0.87188 0.88229 0.92110 0.97058 1.59513 1.06845 1.15190 1.55659 1.21907 1.32287 1.11048 0.93603 0.94296 1.25714 0.95027 0.95898 1.01104 1.69848 1.34486 1.19024 1.32211 0.85497 0.78011 0.77978 0.80033 1.20028 1.19953 1.20409 0.86980 0.91285 0.90837 0.81274 0.79079 0.82539 0.83770 0.87015 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.84 113.37 1.12 1.50 15 2 O -0.33 -13.13 9.77 -90.63 -0.89 -14.02 15 3 C 0.15 5.89 6.70 22.76 0.15 6.04 15 4 C -0.26 -7.85 9.11 22.45 0.20 -7.64 15 5 C 0.11 3.28 11.17 84.60 0.95 4.22 15 6 N -0.53 -19.58 10.36 -196.08 -2.03 -21.61 15 7 C 0.12 5.10 10.43 84.62 0.88 5.99 15 8 C -0.15 -6.78 5.02 -19.68 -0.10 -6.88 15 9 C 0.26 13.84 2.72 43.42 0.12 13.96 15 10 H 0.01 0.69 7.77 -2.39 -0.02 0.67 15 11 N -0.84 -41.67 8.80 -174.96 -1.54 -43.21 15 12 C -0.55 -30.81 8.71 25.60 0.22 -30.59 15 13 H 0.04 2.24 7.74 -2.91 -0.02 2.22 15 14 C 0.02 1.24 5.38 84.65 0.46 1.70 15 15 N -0.92 -51.72 11.54 21.45 0.25 -51.47 15 16 Si 0.96 43.78 29.54 68.60 2.03 45.81 15 17 H -0.28 -12.54 7.11 99.48 0.71 -11.84 15 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 15 20 H 0.11 2.39 8.14 -2.39 -0.02 2.37 15 21 H 0.07 1.46 7.70 -2.39 -0.02 1.44 15 22 H 0.07 1.47 7.72 -2.38 -0.02 1.45 15 23 H 0.17 3.66 6.47 -2.91 -0.02 3.64 15 24 H 0.19 3.92 8.06 -2.91 -0.02 3.90 15 25 H 0.16 6.33 6.30 -2.91 -0.02 6.31 15 26 H 0.35 18.35 7.08 -89.69 -0.63 17.72 15 27 H 0.32 14.69 7.23 -89.69 -0.65 14.04 15 28 H 0.27 14.28 8.31 -92.70 -0.77 13.51 15 Total: -1.00 -65.57 242.93 1.73 -63.85 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: -0.09 Total: 32.35 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 4.00 Total: -11.71 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -3.32 Total: -116.29 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.89 Total: -14.02 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -65.57 1.73 -63.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238387700.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.646 kcal (2) G-P(sol) polarization free energy of solvation -65.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds