Wall clock time and date at job start Mon Mar 30 2020 02:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35909 * 117.00280 * 2 1 4 4 C 1.39139 * 120.47453 * 180.02562 * 3 2 1 5 5 C 1.38542 * 118.37524 * 179.97438 * 4 3 2 6 6 C 1.38260 * 119.21834 * 359.97025 * 5 4 3 7 7 C 1.50699 * 119.55481 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47126 * 244.98068 * 7 6 5 9 9 N 1.46900 * 109.47131 * 4.97843 * 7 6 5 10 10 C 1.50694 * 109.47279 * 124.97784 * 7 6 5 11 11 H 1.08002 * 120.00218 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00215 * 180.02562 * 10 7 6 13 13 N 1.31515 * 120.00136 * 359.97438 * 12 10 7 14 14 Si 1.86808 * 120.00261 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.46931 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47114 * 119.99723 * 14 12 10 17 17 H 1.48504 * 109.47027 * 239.99791 * 14 12 10 18 18 N 1.31846 * 120.88733 * 0.02755 * 6 5 4 19 19 C 1.31844 * 121.78099 * 359.97438 * 18 6 5 20 20 H 1.08999 * 109.47170 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47429 * 300.00985 * 1 2 3 22 22 H 1.09007 * 109.46813 * 60.00551 * 1 2 3 23 23 H 1.07997 * 120.81305 * 359.97438 * 4 3 2 24 24 H 1.07994 * 120.39147 * 179.97438 * 5 4 3 25 25 H 1.00902 * 111.00199 * 296.05256 * 9 7 6 26 26 H 1.00905 * 111.00117 * 60.00071 * 9 7 6 27 27 H 0.96995 * 120.00211 * 180.02562 * 13 12 10 28 28 H 1.08004 * 119.65420 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4349 1.2952 -0.0005 5 6 4.0183 2.5518 -0.0011 6 6 3.2080 3.6721 -0.0017 7 6 3.8346 5.0426 -0.0028 8 1 3.5906 5.5545 0.9281 9 7 5.2930 4.9142 -0.1233 10 6 3.3024 5.8373 -1.1674 11 1 2.5821 5.3944 -1.8393 12 6 3.7349 7.1298 -1.3752 13 7 4.6116 7.6694 -0.5567 14 14 3.0747 8.1152 -2.8184 15 1 2.1073 7.2868 -3.5820 16 1 2.3934 9.3347 -2.3148 17 1 4.1990 8.5070 -3.7059 18 7 1.8945 3.5574 -0.0012 19 6 1.3003 2.3804 -0.0006 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5140 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 4.0433 0.4029 -0.0005 24 1 5.0933 2.6551 -0.0011 25 1 5.6818 4.4408 0.6785 26 1 5.5450 4.4426 -0.9790 27 1 4.9157 8.5789 -0.7027 28 1 0.2216 2.3265 0.0001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238401397.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:14 Heat of formation + Delta-G solvation = 6.345475 kcal Electronic energy + Delta-G solvation = -13227.369555 eV Core-core repulsion = 10858.121653 eV Total energy + Delta-G solvation = -2369.247903 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.19874 -37.96380 -34.43047 -32.05237 -31.49733 -28.96701 -27.50593 -25.95325 -23.27072 -22.63682 -20.42272 -17.90223 -16.65334 -16.29859 -15.67362 -15.45940 -14.51308 -14.20449 -13.99137 -13.86095 -13.04624 -12.76664 -12.18042 -11.82469 -11.80262 -11.53407 -11.02465 -10.76803 -10.59006 -9.81870 -9.30038 -9.17403 -8.75274 -8.39656 -7.75631 -7.19983 -5.82245 -3.94159 1.62447 1.81662 3.37173 3.37945 3.45513 3.50616 4.34648 4.57415 4.90979 4.97902 5.14261 5.17993 5.38345 5.41060 5.45511 5.55066 5.83203 6.05590 6.22089 6.40211 6.60856 7.04222 7.39310 7.50589 7.99126 8.17674 8.49284 8.82499 8.96046 9.16906 9.72437 11.22831 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.047735 B = 0.008317 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.435431 B = 3365.987069 C = 3776.198014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.038 3.962 4 C -0.106 4.106 5 C -0.157 4.157 6 C 0.107 3.893 7 C 0.266 3.734 8 H 0.060 0.940 9 N -0.807 5.807 10 C -0.514 4.514 11 H 0.056 0.944 12 C 0.080 3.920 13 N -0.851 5.851 14 Si 0.887 3.113 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.285 1.285 18 N -0.434 5.434 19 C 0.021 3.979 20 H 0.096 0.904 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.132 0.868 24 H 0.135 0.865 25 H 0.299 0.701 26 H 0.321 0.679 27 H 0.254 0.746 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 -12.689 1.441 13.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C -0.009 4.009 4 C -0.133 4.133 5 C -0.178 4.178 6 C -0.033 4.033 7 C 0.155 3.845 8 H 0.077 0.923 9 N -0.334 5.334 10 C -0.553 4.553 11 H 0.074 0.926 12 C -0.126 4.126 13 N -0.486 5.486 14 Si 0.714 3.286 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.212 1.212 18 N -0.143 5.143 19 C -0.138 4.138 20 H 0.115 0.885 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.149 0.851 24 H 0.153 0.847 25 H 0.111 0.889 26 H 0.133 0.867 27 H 0.064 0.936 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.736 -11.154 1.495 12.209 hybrid contribution -0.304 -1.228 -0.831 1.514 sum -5.040 -12.382 0.664 13.385 Atomic orbital electron populations 1.22999 0.78835 1.03501 1.01434 1.85993 1.20986 1.26771 1.89615 1.19983 0.93253 0.85389 1.02267 1.20780 0.91490 0.98462 1.02539 1.21930 1.01672 0.92008 1.02173 1.23585 0.88779 0.99395 0.91563 1.18125 0.83086 0.83851 0.99408 0.92300 1.59233 1.12178 1.58085 1.03877 1.20763 1.25190 0.97561 1.11784 0.92573 1.24942 0.94389 0.97359 0.95879 1.70108 1.29140 1.13547 1.35848 0.86649 0.78713 0.80161 0.83028 1.19964 1.21100 1.21173 1.67572 1.12607 1.24790 1.09363 1.22995 1.00135 0.87718 1.02966 0.88549 0.92756 0.92711 0.85057 0.84683 0.88919 0.86675 0.93561 0.83528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.82 101.05 0.99 1.27 15 2 O -0.32 -4.65 10.51 -19.45 -0.20 -4.85 15 3 C 0.04 0.63 6.71 -39.07 -0.26 0.37 15 4 C -0.11 -1.76 10.13 -39.13 -0.40 -2.16 15 5 C -0.16 -2.88 9.06 -39.46 -0.36 -3.24 15 6 C 0.11 2.37 6.11 -82.58 -0.50 1.86 15 7 C 0.27 6.69 3.10 -70.02 -0.22 6.48 15 8 H 0.06 1.65 8.14 -51.93 -0.42 1.23 15 9 N -0.81 -18.41 7.83 -6.65 -0.05 -18.46 15 10 C -0.51 -14.44 8.52 -34.44 -0.29 -14.73 15 11 H 0.06 1.63 7.68 -52.49 -0.40 1.22 15 12 C 0.08 2.27 5.39 -17.82 -0.10 2.18 15 13 N -0.85 -24.90 12.77 55.43 0.71 -24.19 15 14 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 15 15 H -0.27 -6.76 7.11 56.52 0.40 -6.36 15 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 15 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 18 N -0.43 -9.59 9.95 -9.35 -0.09 -9.69 15 19 C 0.02 0.38 10.22 -17.37 -0.18 0.20 15 20 H 0.10 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.05 0.51 7.68 -51.93 -0.40 0.11 15 22 H 0.05 0.53 7.68 -51.92 -0.40 0.13 15 23 H 0.13 1.80 8.06 -52.49 -0.42 1.38 15 24 H 0.14 2.18 6.19 -52.49 -0.32 1.85 15 25 H 0.30 5.90 8.09 -39.29 -0.32 5.58 15 26 H 0.32 6.95 8.26 -39.29 -0.32 6.63 15 27 H 0.25 7.11 8.31 -40.82 -0.34 6.77 15 28 H 0.15 2.19 6.32 -52.48 -0.33 1.86 15 LS Contribution 245.53 15.07 3.70 3.70 Total: -1.00 -31.71 245.53 -5.18 -36.88 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -2.90 Total: 7.59 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.31 Total: -7.77 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.56 Total: -52.34 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.20 Total: -4.85 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.71 -5.18 -36.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238401397.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.229 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds