Wall clock time and date at job start Mon Mar 30 2020 02:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48500 * 109.47260 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47169 * 300.00280 * 3 2 1 6 6 H 1.48497 * 109.47001 * 59.99754 * 3 2 1 7 7 C 1.37873 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.51658 * 120.00450 * 0.02562 * 7 2 1 10 10 C 1.52580 * 110.20733 * 59.08967 * 9 7 2 11 11 C 1.51667 * 113.68918 * 189.39356 * 10 9 7 12 12 C 1.51791 * 114.56483 * 47.21015 * 11 10 9 13 13 C 1.52679 * 112.93577 * 311.86164 * 12 11 10 14 14 C 1.52614 * 110.97567 * 294.12281 * 13 12 11 15 15 C 1.51765 * 113.31568 * 67.34513 * 14 13 12 16 16 C 1.51846 * 114.43151 * 47.72184 * 15 14 13 17 17 C 1.51766 * 107.97989 * 52.62454 * 13 12 11 18 18 O 1.20549 * 123.03443 * 119.83516 * 17 13 12 19 19 H 0.96989 * 120.00202 * 0.02562 * 1 2 3 20 20 H 1.09947 * 108.89838 * 311.17910 * 10 9 7 21 21 H 1.09890 * 108.97527 * 67.44228 * 10 9 7 22 22 H 1.08588 * 111.26137 * 280.16623 * 11 10 9 23 23 H 1.11144 * 107.21816 * 165.96787 * 11 10 9 24 24 H 1.09775 * 109.19794 * 190.32958 * 12 11 10 25 25 H 1.09801 * 109.17460 * 73.35179 * 12 11 10 26 26 H 1.10220 * 109.95415 * 172.18172 * 13 12 11 27 27 H 1.09857 * 108.99961 * 305.64588 * 14 13 12 28 28 H 1.09854 * 109.01381 * 189.07927 * 14 13 12 29 29 H 1.08504 * 111.32753 * 280.59712 * 15 14 13 30 30 H 1.11146 * 107.14084 * 166.28400 * 15 14 13 31 31 H 1.09773 * 109.17170 * 189.76137 * 16 15 14 32 32 H 1.09712 * 109.25377 * 72.61519 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2464 -2.5075 -0.0017 10 6 0.3464 -2.5954 -1.2306 11 6 -0.6140 -3.7689 -1.1999 12 6 -1.3607 -3.9390 0.1106 13 6 -0.4446 -3.8735 1.3303 14 6 0.5209 -5.0552 1.3524 15 6 1.5390 -5.0201 0.2275 16 6 2.2274 -3.6790 0.0450 17 6 0.3694 -2.5960 1.2367 18 8 0.3294 -1.7285 2.0728 19 1 -0.4850 0.8399 -0.0004 20 1 -0.2295 -1.6628 -1.3178 21 1 0.9747 -2.6678 -2.1293 22 1 -0.1188 -4.6907 -1.4900 23 1 -1.3751 -3.5919 -1.9902 24 1 -1.8830 -4.9045 0.1058 25 1 -2.1254 -3.1555 0.1943 26 1 -1.0472 -3.8615 2.2531 27 1 -0.0547 -5.9886 1.2876 28 1 1.0490 -5.0679 2.3156 29 1 1.1089 -5.3703 -0.7051 30 1 2.3286 -5.7615 0.4770 31 1 2.8075 -3.6954 -0.8869 32 1 2.9349 -3.5205 0.8684 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238638168.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:23 Heat of formation + Delta-G solvation = -57.506226 kcal Electronic energy + Delta-G solvation = -14823.838240 eV Core-core repulsion = 12555.361863 eV Total energy + Delta-G solvation = -2268.476377 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.55620 -35.86056 -33.42243 -32.19384 -30.89039 -27.74414 -25.33817 -24.51829 -20.82216 -20.42046 -20.11403 -16.85842 -16.42748 -14.94905 -14.61135 -13.87887 -13.81368 -13.55588 -12.70984 -12.62247 -12.48066 -11.99890 -11.76996 -11.45233 -11.10914 -10.87312 -10.58796 -10.49834 -10.39785 -10.16510 -10.05354 -9.74025 -9.59296 -8.95258 -8.70512 -8.30708 -7.48932 -5.93083 -4.00110 3.35443 3.43970 3.46508 3.71833 4.49440 5.16378 5.38780 5.40528 5.43324 5.60509 5.77039 5.88988 5.95459 6.06614 6.15854 6.20628 6.45324 6.50642 6.59003 6.61125 6.72619 6.79893 6.82287 6.91667 6.93444 7.08463 7.39504 7.60941 7.83681 8.09404 8.36696 8.95577 9.34181 9.66621 11.12682 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.043136 B = 0.013361 C = 0.013004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.955126 B = 2095.202556 C = 2152.665193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.078 3.922 3 Si 0.893 3.107 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.059 0.941 9 C 0.041 3.959 10 C -0.105 4.105 11 C -0.112 4.112 12 C -0.090 4.090 13 C -0.146 4.146 14 C -0.094 4.094 15 C -0.116 4.116 16 C -0.096 4.096 17 C 0.383 3.617 18 O -0.437 6.437 19 H 0.259 0.741 20 H 0.097 0.903 21 H 0.039 0.961 22 H 0.052 0.948 23 H 0.035 0.965 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.643 -8.823 -1.405 8.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.125 4.125 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.077 0.923 9 C 0.040 3.960 10 C -0.143 4.143 11 C -0.149 4.149 12 C -0.127 4.127 13 C -0.166 4.166 14 C -0.131 4.131 15 C -0.153 4.153 16 C -0.134 4.134 17 C 0.255 3.745 18 O -0.307 6.307 19 H 0.069 0.931 20 H 0.115 0.885 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.820 -8.227 -0.956 8.323 hybrid contribution 0.270 0.770 -0.027 0.816 sum -0.549 -7.458 -0.983 7.542 Atomic orbital electron populations 1.69792 1.05927 1.26330 1.49184 1.24849 0.94762 0.98975 0.93949 0.86527 0.80092 0.83896 0.77378 1.19842 1.21192 1.21044 1.21015 0.92547 0.89155 1.52099 0.92317 1.18838 0.92100 0.93637 0.91462 1.21344 0.97320 0.98529 0.97079 1.21311 0.98538 0.99528 0.95534 1.21114 0.97244 1.00563 0.93824 1.22142 0.97724 0.97895 0.98797 1.21167 0.96621 0.96672 0.98675 1.21319 0.97503 0.97908 0.98591 1.21375 0.98043 0.92963 1.01032 1.25137 0.79290 0.83346 0.86748 1.90130 1.58958 1.40137 1.41466 0.93091 0.88489 0.94177 0.92918 0.94662 0.93220 0.92437 0.91026 0.92656 0.92923 0.91636 0.94283 0.92661 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.21 9.73 55.43 0.54 -24.67 16 2 C 0.08 2.19 4.65 -17.82 -0.08 2.10 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.51 -14.06 7.81 -33.97 -0.27 -14.33 16 8 H 0.06 1.61 7.77 -52.48 -0.41 1.20 16 9 C 0.04 0.98 0.54 -155.97 -0.08 0.90 16 10 C -0.10 -2.36 4.50 -27.62 -0.12 -2.49 16 11 C -0.11 -2.07 4.85 -28.02 -0.14 -2.20 16 12 C -0.09 -1.63 5.30 -27.51 -0.15 -1.78 16 13 C -0.15 -2.87 3.24 -91.61 -0.30 -3.16 16 14 C -0.09 -1.55 5.28 -27.56 -0.15 -1.70 16 15 C -0.12 -1.93 4.86 -27.94 -0.14 -2.06 16 16 C -0.10 -1.95 4.59 -27.38 -0.13 -2.08 16 17 C 0.38 9.51 4.97 -27.86 -0.14 9.37 16 18 O -0.44 -12.63 15.72 6.17 0.10 -12.53 16 19 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 20 H 0.10 2.51 5.86 -51.39 -0.30 2.21 16 21 H 0.04 0.87 8.22 -51.42 -0.42 0.45 16 22 H 0.05 0.86 5.58 -52.16 -0.29 0.57 16 23 H 0.03 0.60 8.30 -50.69 -0.42 0.18 16 24 H 0.05 0.75 8.21 -51.49 -0.42 0.33 16 25 H 0.06 1.11 8.21 -51.47 -0.42 0.69 16 26 H 0.07 1.37 8.24 -51.23 -0.42 0.94 16 27 H 0.05 0.77 8.21 -51.44 -0.42 0.35 16 28 H 0.05 0.85 8.21 -51.44 -0.42 0.43 16 29 H 0.07 1.01 5.56 -52.21 -0.29 0.72 16 30 H 0.04 0.56 8.30 -50.69 -0.42 0.14 16 31 H 0.05 1.06 8.21 -51.49 -0.42 0.64 16 32 H 0.05 1.00 8.18 -51.52 -0.42 0.58 16 LS Contribution 242.28 15.07 3.65 3.65 Total: -1.00 -30.05 242.28 -7.06 -37.11 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -4.64 Total: -3.09 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -1.68 Total: -17.42 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.54 Total: -24.67 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.10 Total: -12.53 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.05 -7.06 -37.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238638168.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.401 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds