Wall clock time and date at job start Mon Mar 30 2020 02:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.47058 * 2 1 4 4 C 1.36579 * 119.88970 * 99.99972 * 3 2 1 5 5 C 1.40750 * 119.77372 * 179.97438 * 4 3 2 6 6 C 1.41315 * 120.21320 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99939 * 205.41209 * 6 5 4 8 8 C 1.39921 * 119.99992 * 25.41159 * 6 5 4 9 9 N 1.30849 * 119.99933 * 15.28337 * 8 6 5 10 10 Si 1.86798 * 119.99797 * 195.28161 * 8 6 5 11 11 H 1.48495 * 109.47169 * 90.00058 * 10 8 6 12 12 H 1.48501 * 109.47024 * 210.00249 * 10 8 6 13 13 H 1.48509 * 109.47230 * 330.00158 * 10 8 6 14 14 C 1.40784 * 119.56921 * 359.97438 * 5 4 3 15 15 C 1.50697 * 120.11032 * 179.97438 * 14 5 4 16 16 C 1.36546 * 119.77699 * 0.03933 * 14 5 4 17 17 C 1.38920 * 119.88600 * 280.02580 * 3 2 1 18 18 F 1.35094 * 119.78350 * 359.97438 * 17 3 2 19 19 H 1.08989 * 109.47377 * 59.99900 * 1 2 3 20 20 H 1.09003 * 109.47046 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47095 * 299.99893 * 1 2 3 22 22 H 1.08990 * 109.46892 * 240.00123 * 2 1 3 23 23 H 1.09002 * 109.47145 * 119.99962 * 2 1 3 24 24 H 1.08001 * 120.11431 * 359.72716 * 4 3 2 25 25 H 0.97006 * 119.99818 * 179.97438 * 9 8 6 26 26 H 1.09000 * 109.47258 * 270.04002 * 15 14 5 27 27 H 1.09000 * 109.47549 * 30.04021 * 15 14 5 28 28 H 1.09002 * 109.47081 * 150.04211 * 15 14 5 29 29 H 1.07998 * 119.89339 * 179.97438 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.4531 1.9940 1.1661 5 6 2.9223 3.3210 1.1632 6 6 3.3603 3.9230 2.3644 7 1 3.3285 4.9971 2.4730 8 6 3.8353 3.1276 3.4129 9 7 4.1571 1.8785 3.1927 10 14 4.0100 3.8488 5.1272 11 1 2.7451 3.6497 5.8792 12 1 5.1217 3.1689 5.8393 13 1 4.3021 5.3014 5.0257 14 6 2.9533 4.0443 -0.0442 15 6 3.4528 5.4660 -0.0612 16 6 2.5281 3.4537 -1.1996 17 6 2.0654 2.1434 -1.1861 18 9 1.6471 1.5677 -2.3344 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 2.4221 1.4323 2.0880 25 1 4.4867 1.3272 3.9196 26 1 2.6190 6.1461 0.1129 27 1 4.1993 5.5983 0.7219 28 1 3.9014 5.6819 -1.0309 29 1 2.5508 4.0069 -2.1268 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257932837.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:33 Heat of formation + Delta-G solvation = -55.850050 kcal Electronic energy + Delta-G solvation = -13427.416982 eV Core-core repulsion = 11035.552117 eV Total energy + Delta-G solvation = -2391.864865 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.43275 -37.90806 -34.11151 -33.34894 -29.95607 -29.37200 -26.19998 -24.73725 -22.09184 -21.26913 -19.35921 -17.06415 -15.70696 -15.51804 -14.78266 -14.33405 -13.96946 -13.13929 -12.94229 -12.66039 -12.50858 -12.27997 -11.82669 -11.76175 -11.32393 -11.21604 -10.94297 -10.82550 -10.68327 -10.29383 -10.01097 -9.71022 -9.35615 -9.17306 -7.45734 -7.19716 -6.81133 -4.40551 2.61475 2.85191 3.03422 3.06472 3.10931 3.87187 4.47975 5.44494 5.67237 5.70042 5.85666 6.06315 6.10032 6.30093 6.37083 6.45078 6.55235 6.61112 6.65698 6.78986 6.87088 7.00888 7.18670 7.25389 7.52037 7.70978 7.90104 8.00199 8.18759 8.51046 8.79497 8.86859 10.11131 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.033109 B = 0.011496 C = 0.009023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.490505 B = 2435.073121 C = 3102.402458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 C -0.097 4.097 4 C -0.138 4.138 5 C 0.106 3.894 6 C -0.453 4.453 7 H 0.082 0.918 8 C 0.073 3.927 9 N -0.792 5.792 10 Si 0.910 3.090 11 H -0.267 1.267 12 H -0.278 1.278 13 H -0.262 1.262 14 C -0.181 4.181 15 C -0.085 4.085 16 C -0.116 4.116 17 C -0.043 4.043 18 F -0.173 7.173 19 H 0.052 0.948 20 H 0.045 0.955 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.128 0.872 25 H 0.282 0.718 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.233 0.060 -0.534 2.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C -0.098 4.098 4 C -0.157 4.157 5 C 0.103 3.897 6 C -0.482 4.482 7 H 0.100 0.900 8 C -0.144 4.144 9 N -0.417 5.417 10 Si 0.734 3.266 11 H -0.192 1.192 12 H -0.203 1.203 13 H -0.185 1.185 14 C -0.182 4.182 15 C -0.141 4.141 16 C -0.135 4.135 17 C -0.062 4.062 18 F -0.153 7.153 19 H 0.071 0.929 20 H 0.064 0.936 21 H 0.072 0.928 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.146 0.854 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.135 -0.166 -0.448 2.188 hybrid contribution 0.122 0.122 0.551 0.577 sum -2.013 -0.044 0.102 2.017 Atomic orbital electron populations 1.21688 0.95936 1.00293 1.01869 1.20326 0.95289 0.94186 1.01472 1.19266 1.02269 0.95220 0.93013 1.20916 1.01806 0.96806 0.96187 1.17530 0.89005 0.91558 0.91608 1.19593 1.36439 0.94956 0.97194 0.89960 1.25950 0.92871 0.94577 1.01050 1.69818 1.30440 1.07500 1.33938 0.86275 0.78704 0.80296 0.81275 1.19245 1.20273 1.18545 1.19350 1.09084 0.97212 0.92594 1.20405 0.99796 0.93550 1.00385 1.20126 1.02179 0.93372 0.97781 1.17128 1.14445 0.93408 0.81247 1.91251 1.89592 1.85239 1.49177 0.92923 0.93553 0.92829 0.92364 0.91650 0.85444 0.90744 0.93748 0.91756 0.94170 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.89 37.16 0.37 -2.09 15 2 C -0.08 -1.51 5.77 -27.88 -0.16 -1.67 15 3 C -0.10 -2.30 5.11 -104.97 -0.54 -2.83 15 4 C -0.14 -3.52 8.24 -39.23 -0.32 -3.84 15 5 C 0.11 2.74 5.57 -106.82 -0.60 2.14 15 6 C -0.45 -11.47 8.14 -37.78 -0.31 -11.78 15 7 H 0.08 1.99 6.85 -52.48 -0.36 1.63 15 8 C 0.07 1.78 5.19 -17.34 -0.09 1.69 15 9 N -0.79 -19.79 10.87 55.55 0.60 -19.18 15 10 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 15 11 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 12 H -0.28 -5.41 7.11 56.52 0.40 -5.01 15 13 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 14 C -0.18 -4.35 5.91 -104.27 -0.62 -4.96 15 15 C -0.08 -1.72 9.40 36.00 0.34 -1.38 15 16 C -0.12 -2.71 9.61 -39.92 -0.38 -3.09 15 17 C -0.04 -1.02 7.26 -39.06 -0.28 -1.30 15 18 F -0.17 -3.98 16.64 2.25 0.04 -3.94 15 19 H 0.05 0.94 8.14 -51.94 -0.42 0.52 15 20 H 0.05 0.68 8.14 -51.93 -0.42 0.25 15 21 H 0.05 0.94 8.14 -51.93 -0.42 0.51 15 22 H 0.06 1.13 7.94 -51.93 -0.41 0.72 15 23 H 0.06 1.27 7.98 -51.93 -0.41 0.85 15 24 H 0.13 3.32 6.10 -52.49 -0.32 3.00 15 25 H 0.28 6.41 8.30 -40.82 -0.34 6.07 15 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 27 H 0.06 1.32 6.77 -51.93 -0.35 0.97 15 28 H 0.04 0.72 8.08 -51.93 -0.42 0.30 15 29 H 0.10 2.07 8.06 -52.49 -0.42 1.65 15 LS Contribution 251.14 15.07 3.78 3.78 Total: -1.00 -26.44 251.14 -6.72 -33.15 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -3.53 Total: 2.30 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -2.59 Total: -29.13 kcal Atomic # 7 Polarization: -19.79 SS G_CDS: 0.60 Total: -19.18 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.04 Total: -3.94 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -26.44 -6.72 -33.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257932837.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.695 kcal (2) G-P(sol) polarization free energy of solvation -26.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds