Wall clock time and date at job start Mon Mar 30 2020 02:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.47058 * 2 1 4 4 C 1.36579 * 119.88970 * 99.99972 * 3 2 1 5 5 C 1.40750 * 119.77372 * 179.97438 * 4 3 2 6 6 C 1.41315 * 120.21320 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99939 * 205.41209 * 6 5 4 8 8 C 1.39921 * 119.99992 * 25.41159 * 6 5 4 9 9 N 1.30849 * 119.99933 * 15.28337 * 8 6 5 10 10 Si 1.86798 * 119.99797 * 195.28161 * 8 6 5 11 11 H 1.48495 * 109.47169 * 90.00058 * 10 8 6 12 12 H 1.48501 * 109.47024 * 210.00249 * 10 8 6 13 13 H 1.48509 * 109.47230 * 330.00158 * 10 8 6 14 14 C 1.40784 * 119.56921 * 359.97438 * 5 4 3 15 15 C 1.50697 * 120.11032 * 179.97438 * 14 5 4 16 16 C 1.36546 * 119.77699 * 0.03933 * 14 5 4 17 17 C 1.38920 * 119.88600 * 280.02580 * 3 2 1 18 18 F 1.35094 * 119.78350 * 359.97438 * 17 3 2 19 19 H 1.08989 * 109.47377 * 59.99900 * 1 2 3 20 20 H 1.09003 * 109.47046 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47095 * 299.99893 * 1 2 3 22 22 H 1.08990 * 109.46892 * 240.00123 * 2 1 3 23 23 H 1.09002 * 109.47145 * 119.99962 * 2 1 3 24 24 H 1.08001 * 120.11431 * 359.72716 * 4 3 2 25 25 H 0.97006 * 119.99818 * 179.97438 * 9 8 6 26 26 H 1.09000 * 109.47258 * 270.04002 * 15 14 5 27 27 H 1.09000 * 109.47549 * 30.04021 * 15 14 5 28 28 H 1.09002 * 109.47081 * 150.04211 * 15 14 5 29 29 H 1.07998 * 119.89339 * 179.97438 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.4531 1.9940 1.1661 5 6 2.9223 3.3210 1.1632 6 6 3.3603 3.9230 2.3644 7 1 3.3285 4.9971 2.4730 8 6 3.8353 3.1276 3.4129 9 7 4.1571 1.8785 3.1927 10 14 4.0100 3.8488 5.1272 11 1 2.7451 3.6497 5.8792 12 1 5.1217 3.1689 5.8393 13 1 4.3021 5.3014 5.0257 14 6 2.9533 4.0443 -0.0442 15 6 3.4528 5.4660 -0.0612 16 6 2.5281 3.4537 -1.1996 17 6 2.0654 2.1434 -1.1861 18 9 1.6471 1.5677 -2.3344 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 2.4221 1.4323 2.0880 25 1 4.4867 1.3272 3.9196 26 1 2.6190 6.1461 0.1129 27 1 4.1993 5.5983 0.7219 28 1 3.9014 5.6819 -1.0309 29 1 2.5508 4.0069 -2.1268 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257932837.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:32 Heat of formation + Delta-G solvation = -67.920700 kcal Electronic energy + Delta-G solvation = -13427.940405 eV Core-core repulsion = 11035.552117 eV Total energy + Delta-G solvation = -2392.388287 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.27873 -39.73662 -35.85984 -35.11808 -31.60435 -31.24692 -27.93153 -26.53726 -23.70493 -23.14335 -21.16543 -18.92779 -17.51805 -17.32044 -16.55113 -16.14212 -15.69818 -14.70488 -14.62071 -14.39288 -14.20177 -14.00245 -13.54146 -13.40398 -13.02257 -12.82291 -12.64663 -12.45190 -12.26039 -11.89360 -11.76109 -11.48442 -11.12785 -10.99154 -9.32626 -9.06517 -8.62669 -6.32049 0.78959 0.98690 1.41389 1.50426 1.54093 2.21248 2.64914 3.58315 3.96432 4.07033 4.16041 4.38834 4.54459 4.65806 4.80156 4.90412 4.98177 5.01515 5.03969 5.10421 5.23918 5.33361 5.35906 5.45041 5.70681 5.85038 6.01626 6.12423 6.32115 6.63082 6.90890 6.98864 8.31854 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.033109 B = 0.011496 C = 0.009023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.490505 B = 2435.073121 C = 3102.402458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.076 4.076 3 C -0.102 4.102 4 C -0.162 4.162 5 C 0.076 3.924 6 C -0.478 4.478 7 H 0.087 0.913 8 C 0.034 3.966 9 N -0.821 5.821 10 Si 0.983 3.017 11 H -0.264 1.264 12 H -0.271 1.271 13 H -0.255 1.255 14 C -0.194 4.194 15 C -0.080 4.080 16 C -0.121 4.121 17 C -0.058 4.058 18 F -0.168 7.168 19 H 0.046 0.954 20 H 0.078 0.922 21 H 0.047 0.953 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.114 0.886 25 H 0.289 0.711 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.404 0.490 -0.268 2.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.113 4.113 3 C -0.103 4.103 4 C -0.182 4.182 5 C 0.074 3.926 6 C -0.507 4.507 7 H 0.105 0.895 8 C -0.182 4.182 9 N -0.447 5.447 10 Si 0.803 3.197 11 H -0.188 1.188 12 H -0.195 1.195 13 H -0.179 1.179 14 C -0.196 4.196 15 C -0.136 4.136 16 C -0.140 4.140 17 C -0.078 4.078 18 F -0.148 7.148 19 H 0.065 0.935 20 H 0.097 0.903 21 H 0.066 0.934 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.132 0.868 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.310 0.263 -0.203 2.334 hybrid contribution 0.180 -0.041 0.399 0.440 sum -2.130 0.222 0.196 2.150 Atomic orbital electron populations 1.21625 0.93800 1.02298 1.01292 1.20393 0.97120 0.92015 1.01812 1.19612 1.01285 0.96923 0.92449 1.20886 1.03691 0.97245 0.96373 1.17956 0.89602 0.92234 0.92836 1.19858 1.37389 0.95430 0.98004 0.89529 1.26801 0.91954 0.94769 1.04659 1.69876 1.30678 1.08740 1.35419 0.85182 0.78794 0.79652 0.76027 1.18834 1.19522 1.17896 1.19790 1.08762 0.98887 0.92154 1.20400 1.00152 0.91615 1.01463 1.20430 1.01487 0.93401 0.98650 1.17334 1.14980 0.93968 0.81534 1.91253 1.89569 1.85201 1.48760 0.93489 0.90275 0.93359 0.91743 0.91499 0.86799 0.90034 0.92231 0.92461 0.91888 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 9.89 71.98 0.71 -3.74 15 2 C -0.08 -3.00 5.77 29.85 0.17 -2.83 15 3 C -0.10 -4.86 5.11 -20.09 -0.10 -4.96 15 4 C -0.16 -8.46 8.24 22.50 0.19 -8.27 15 5 C 0.08 4.00 5.57 -21.29 -0.12 3.89 15 6 C -0.48 -24.40 8.14 23.43 0.19 -24.21 15 7 H 0.09 4.19 6.85 -2.91 -0.02 4.17 15 8 C 0.03 1.62 5.19 85.25 0.44 2.06 15 9 N -0.82 -41.49 10.87 21.82 0.24 -41.25 15 10 Si 0.98 36.53 29.59 68.60 2.03 38.56 15 11 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 12 H -0.27 -9.67 7.11 99.48 0.71 -8.96 15 13 H -0.26 -9.16 7.11 99.48 0.71 -8.46 15 14 C -0.19 -9.27 5.91 -19.64 -0.12 -9.38 15 15 C -0.08 -3.12 9.40 71.23 0.67 -2.45 15 16 C -0.12 -5.56 9.61 22.05 0.21 -5.34 15 17 C -0.06 -2.78 7.26 22.61 0.16 -2.61 15 18 F -0.17 -7.56 16.64 44.97 0.75 -6.81 15 19 H 0.05 1.61 8.14 -2.39 -0.02 1.59 15 20 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 21 H 0.05 1.65 8.14 -2.38 -0.02 1.63 15 22 H 0.06 2.43 7.94 -2.39 -0.02 2.41 15 23 H 0.07 2.58 7.98 -2.39 -0.02 2.56 15 24 H 0.11 6.13 6.10 -2.91 -0.02 6.11 15 25 H 0.29 13.20 8.30 -92.70 -0.77 12.43 15 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 15 27 H 0.06 2.30 6.77 -2.39 -0.02 2.28 15 28 H 0.06 2.14 8.08 -2.39 -0.02 2.12 15 29 H 0.12 4.90 8.06 -2.91 -0.02 4.88 15 Total: -1.00 -55.82 251.14 6.57 -49.25 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.14 Total: 18.11 kcal Atomic # 6 Polarization: -60.27 SS G_CDS: 2.41 Total: -57.86 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.24 Total: -41.25 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 0.75 Total: -6.81 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Total: -55.82 6.57 -49.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257932837.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.668 kcal (2) G-P(sol) polarization free energy of solvation -55.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds