Wall clock time and date at job start Mon Mar 30 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46812 * 2 1 4 4 C 1.50701 * 109.47275 * 119.99730 * 2 1 3 5 5 C 1.36581 * 119.88893 * 299.73051 * 4 2 1 6 6 C 1.40757 * 119.77145 * 179.75738 * 5 4 2 7 7 C 1.41310 * 120.21527 * 180.24923 * 6 5 4 8 8 H 1.08003 * 120.00106 * 24.74716 * 7 6 5 9 9 C 1.39917 * 120.00319 * 204.75106 * 7 6 5 10 10 N 1.30856 * 119.99570 * 17.89349 * 9 7 6 11 11 Si 1.86801 * 120.00306 * 197.89230 * 9 7 6 12 12 H 1.48499 * 109.47030 * 60.00158 * 11 9 7 13 13 H 1.48503 * 109.47100 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46799 * 300.00013 * 11 9 7 15 15 C 1.40781 * 119.57071 * 0.53049 * 6 5 4 16 16 C 1.36553 * 119.77232 * 359.71748 * 15 6 5 17 17 C 1.38916 * 119.88864 * 119.99846 * 4 2 1 18 18 F 1.35104 * 119.78086 * 0.02562 * 17 4 2 19 19 H 1.08994 * 109.46984 * 299.99443 * 1 2 3 20 20 H 1.09000 * 109.46554 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47435 * 60.00575 * 1 2 3 22 22 H 1.08996 * 109.46763 * 240.00062 * 2 1 3 23 23 H 1.08996 * 109.47367 * 59.99900 * 3 2 1 24 24 H 1.08995 * 109.47002 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.46924 * 300.00133 * 3 2 1 26 26 H 1.07997 * 120.11925 * 359.97438 * 5 4 2 27 27 H 0.96996 * 119.99873 * 180.02562 * 10 9 7 28 28 H 1.08003 * 120.11292 * 179.68954 * 15 6 5 29 29 H 1.07995 * 119.88723 * 179.97438 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.7057 -0.2385 2.4699 6 6 2.1720 -0.9069 3.6175 7 6 1.8353 -0.4299 4.9043 8 1 0.9424 0.1614 5.0445 9 6 2.6585 -0.7235 5.9969 10 7 3.8895 -1.1215 5.8002 11 14 2.0005 -0.5472 7.7363 12 1 0.8315 -1.4450 7.9166 13 1 3.0620 -0.9167 8.7069 14 1 1.5849 0.8594 7.9680 15 6 2.9810 -2.0502 3.4750 16 6 3.3009 -2.5033 2.2272 17 6 2.8309 -1.8396 1.1004 18 9 3.1536 -2.2952 -0.1299 19 1 -0.3633 0.5137 0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3634 0.5137 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.6766 1.9563 0.8899 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.0887 0.6423 2.5691 27 1 4.4601 -1.3254 6.5576 28 1 3.3478 -2.5669 4.3497 29 1 3.9217 -3.3799 2.1158 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257948804.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:39 Heat of formation + Delta-G solvation = -66.424405 kcal Electronic energy + Delta-G solvation = -13345.605204 eV Core-core repulsion = 10953.281801 eV Total energy + Delta-G solvation = -2392.323403 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.31098 -39.72870 -36.65330 -34.98487 -31.56598 -30.25077 -27.93867 -27.00982 -24.10796 -22.70511 -21.00688 -18.84183 -18.10383 -17.26918 -16.62246 -16.09427 -15.73724 -14.96496 -14.79052 -14.43590 -14.09509 -13.85048 -13.72122 -13.14453 -12.95398 -12.84824 -12.66184 -12.44832 -12.18680 -11.89999 -11.86840 -11.41162 -11.13211 -10.97432 -9.49052 -9.16080 -8.69375 -6.36805 0.77906 0.97620 1.40259 1.50070 1.53641 2.19986 2.62631 3.58883 3.87806 3.94521 4.13393 4.35782 4.39476 4.67997 4.85127 4.88003 4.93029 5.00952 5.01486 5.11831 5.22844 5.28798 5.43892 5.45977 5.61757 5.88726 5.91388 6.04441 6.26737 6.59248 6.86023 6.93683 8.27699 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.040474 B = 0.009603 C = 0.008342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.629735 B = 2915.052067 C = 3355.635713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.057 4.057 3 C -0.133 4.133 4 C -0.070 4.070 5 C -0.206 4.206 6 C 0.078 3.922 7 C -0.488 4.488 8 H 0.084 0.916 9 C 0.036 3.964 10 N -0.821 5.821 11 Si 0.985 3.015 12 H -0.260 1.260 13 H -0.269 1.269 14 H -0.257 1.257 15 C -0.172 4.172 16 C -0.130 4.130 17 C -0.068 4.068 18 F -0.169 7.169 19 H 0.055 0.945 20 H 0.044 0.956 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.113 0.887 27 H 0.291 0.709 28 H 0.112 0.888 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 2.389 -3.333 5.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.076 4.076 3 C -0.190 4.190 4 C -0.071 4.071 5 C -0.225 4.225 6 C 0.076 3.924 7 C -0.517 4.517 8 H 0.102 0.898 9 C -0.180 4.180 10 N -0.446 5.446 11 Si 0.805 3.195 12 H -0.184 1.184 13 H -0.193 1.193 14 H -0.181 1.181 15 C -0.191 4.191 16 C -0.149 4.149 17 C -0.087 4.087 18 F -0.149 7.149 19 H 0.074 0.926 20 H 0.063 0.937 21 H 0.098 0.902 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.099 0.901 26 H 0.131 0.869 27 H 0.102 0.898 28 H 0.130 0.870 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.632 2.320 -3.262 5.405 hybrid contribution 0.306 -0.339 0.630 0.778 sum -3.326 1.981 -2.633 4.681 Atomic orbital electron populations 1.21758 0.93090 1.01544 1.02525 1.20070 0.97044 0.96347 0.94118 1.21765 1.00328 0.94439 1.02496 1.19455 0.97225 0.94227 0.96230 1.20580 1.08951 1.02088 0.90912 1.18034 0.90305 0.90324 0.93745 1.19855 1.08863 1.30516 0.92447 0.89791 1.26828 0.93735 0.91631 1.05832 1.69870 1.06466 1.32545 1.35723 0.85202 0.78999 0.80118 0.75146 1.18404 1.19309 1.18120 1.20914 1.04553 0.98365 0.95305 1.20638 1.01515 1.00339 0.92419 1.17380 1.10871 1.01681 0.78806 1.91247 1.92592 1.89306 1.41729 0.92625 0.93679 0.90197 0.91395 0.92705 0.94054 0.90125 0.86919 0.89816 0.86975 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 9.00 71.98 0.65 -3.30 15 2 C -0.06 -2.02 3.07 -11.54 -0.04 -2.06 15 3 C -0.13 -4.11 9.00 71.98 0.65 -3.46 15 4 C -0.07 -3.15 4.76 -20.09 -0.10 -3.25 15 5 C -0.21 -9.82 8.39 22.50 0.19 -9.64 15 6 C 0.08 4.16 5.57 -21.29 -0.12 4.04 15 7 C -0.49 -25.36 9.05 23.43 0.21 -25.14 15 8 H 0.08 4.13 7.91 -2.91 -0.02 4.11 15 9 C 0.04 1.74 5.14 85.24 0.44 2.17 15 10 N -0.82 -41.86 10.96 21.82 0.24 -41.62 15 11 Si 0.99 36.62 29.60 68.60 2.03 38.65 15 12 H -0.26 -9.47 7.11 99.48 0.71 -8.76 15 13 H -0.27 -9.50 7.11 99.48 0.71 -8.79 15 14 H -0.26 -9.20 7.11 99.48 0.71 -8.49 15 15 C -0.17 -9.09 8.65 22.50 0.19 -8.90 15 16 C -0.13 -6.41 9.96 22.05 0.22 -6.19 15 17 C -0.07 -3.24 7.27 22.61 0.16 -3.07 15 18 F -0.17 -7.67 16.17 44.97 0.73 -6.94 15 19 H 0.05 1.68 7.38 -2.39 -0.02 1.66 15 20 H 0.04 1.39 8.14 -2.39 -0.02 1.37 15 21 H 0.08 1.87 8.14 -2.39 -0.02 1.85 15 22 H 0.07 2.40 7.11 -2.39 -0.02 2.39 15 23 H 0.05 1.72 7.35 -2.39 -0.02 1.70 15 24 H 0.04 1.35 8.14 -2.39 -0.02 1.33 15 25 H 0.08 1.94 8.14 -2.38 -0.02 1.92 15 26 H 0.11 4.98 7.05 -2.91 -0.02 4.96 15 27 H 0.29 13.40 8.30 -92.71 -0.77 12.63 15 28 H 0.11 6.10 6.16 -2.91 -0.02 6.08 15 29 H 0.11 5.06 8.06 -2.91 -0.02 5.04 15 Total: -1.00 -56.31 249.79 6.60 -49.71 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 1.14 Total: 18.99 kcal Atomic # 6 Polarization: -61.26 SS G_CDS: 2.46 Total: -58.79 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.24 Total: -41.62 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.73 Total: -6.94 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Total: -56.31 6.60 -49.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257948804.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.712 kcal (2) G-P(sol) polarization free energy of solvation -56.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds