Wall clock time and date at job start Mon Mar 30 2020 02:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47045 * 2 1 4 4 C 1.50698 * 109.46794 * 119.99711 * 2 1 3 5 5 C 1.38714 * 119.77746 * 300.00023 * 4 2 1 6 6 C 1.38489 * 120.54674 * 180.02562 * 5 4 2 7 7 C 1.38026 * 120.08797 * 0.02574 * 6 5 4 8 8 F 1.35099 * 120.22541 * 179.97438 * 7 6 5 9 9 C 1.40988 * 119.54880 * 359.97253 * 7 6 5 10 10 C 1.41289 * 120.26564 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99866 * 335.34204 * 10 9 7 12 12 C 1.39940 * 120.00204 * 155.61187 * 10 9 7 13 13 N 1.30844 * 119.99749 * 341.98332 * 12 10 9 14 14 Si 1.86793 * 120.00119 * 161.97930 * 12 10 9 15 15 H 1.48506 * 109.47050 * 90.00180 * 14 12 10 16 16 H 1.48497 * 109.47593 * 209.99801 * 14 12 10 17 17 H 1.48506 * 109.47424 * 330.00369 * 14 12 10 18 18 C 1.36548 * 119.77387 * 120.28589 * 4 2 1 19 19 H 1.08996 * 109.47395 * 300.00451 * 1 2 3 20 20 H 1.09000 * 109.47227 * 60.00212 * 1 2 3 21 21 H 1.09000 * 109.47110 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47395 * 239.99548 * 2 1 3 23 23 H 1.09001 * 109.47060 * 179.97438 * 3 2 1 24 24 H 1.08998 * 109.46800 * 299.99444 * 3 2 1 25 25 H 1.09001 * 109.47335 * 59.99993 * 3 2 1 26 26 H 1.08006 * 119.73058 * 359.97438 * 5 4 2 27 27 H 1.08003 * 119.95898 * 179.97438 * 6 5 4 28 28 H 0.97004 * 119.99935 * 180.02562 * 13 12 10 29 29 H 1.08004 * 120.05280 * 0.02562 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 1.6942 -0.2324 2.4881 6 6 2.1474 -0.8724 3.6295 7 6 2.9428 -1.9955 3.5235 8 9 3.3868 -2.6217 4.6352 9 6 3.2886 -2.4846 2.2473 10 6 4.1015 -3.6334 2.1212 11 1 4.7747 -3.9088 2.9195 12 6 4.0386 -4.4111 0.9595 13 7 3.0121 -4.3036 0.1552 14 14 5.4199 -5.6024 0.5571 15 1 5.1235 -6.9263 1.1612 16 1 5.5365 -5.7458 -0.9164 17 1 6.6978 -5.0825 1.1065 18 6 2.8217 -1.8168 1.1000 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.0732 0.6467 2.5779 27 1 1.8788 -0.4918 4.6039 28 1 2.9683 -4.8430 -0.6499 29 1 3.0851 -2.1804 0.1177 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257950350.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:58 Heat of formation + Delta-G solvation = -68.059223 kcal Electronic energy + Delta-G solvation = -13379.892528 eV Core-core repulsion = 10987.498234 eV Total energy + Delta-G solvation = -2392.394294 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.18101 -39.76895 -36.42987 -35.05414 -31.63618 -30.07949 -27.86388 -27.20869 -23.55923 -23.18192 -20.87270 -18.87886 -17.97370 -17.21682 -16.42392 -16.04999 -15.96680 -15.01541 -14.73404 -14.38917 -14.14544 -13.82801 -13.41112 -13.33521 -13.00422 -12.85534 -12.69335 -12.35694 -12.16816 -11.82622 -11.69905 -11.28384 -11.21876 -11.07955 -9.48597 -9.09496 -8.70400 -6.42944 0.81473 0.94088 1.34920 1.44967 1.51366 2.17406 2.62818 3.51406 4.00424 4.10037 4.15350 4.39066 4.48645 4.74737 4.80405 4.91232 4.98777 5.03983 5.07256 5.13636 5.22994 5.33956 5.52464 5.53946 5.62980 5.77332 6.04638 6.12833 6.22114 6.57718 6.76428 6.91038 8.24003 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.029217 B = 0.011814 C = 0.009102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.129103 B = 2369.424555 C = 3075.561116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.054 4.054 3 C -0.132 4.132 4 C -0.066 4.066 5 C -0.202 4.202 6 C -0.121 4.121 7 C -0.078 4.078 8 F -0.174 7.174 9 C 0.057 3.943 10 C -0.499 4.499 11 H 0.067 0.933 12 C 0.040 3.960 13 N -0.814 5.814 14 Si 0.983 3.017 15 H -0.262 1.262 16 H -0.257 1.257 17 H -0.262 1.262 18 C -0.163 4.163 19 H 0.062 0.938 20 H 0.075 0.925 21 H 0.036 0.964 22 H 0.058 0.942 23 H 0.042 0.958 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.133 0.867 27 H 0.126 0.874 28 H 0.293 0.707 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.081 5.865 -3.339 7.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.072 4.072 3 C -0.189 4.189 4 C -0.066 4.066 5 C -0.221 4.221 6 C -0.140 4.140 7 C -0.098 4.098 8 F -0.154 7.154 9 C 0.054 3.946 10 C -0.528 4.528 11 H 0.085 0.915 12 C -0.176 4.176 13 N -0.439 5.439 14 Si 0.803 3.197 15 H -0.187 1.187 16 H -0.181 1.181 17 H -0.186 1.186 18 C -0.183 4.183 19 H 0.081 0.919 20 H 0.094 0.906 21 H 0.055 0.945 22 H 0.077 0.923 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.103 0.897 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.185 5.749 -3.518 7.085 hybrid contribution 0.703 -1.038 0.331 1.297 sum -1.482 4.711 -3.187 5.878 Atomic orbital electron populations 1.21747 0.93530 1.01112 1.02543 1.20092 0.96649 0.96375 0.94105 1.21765 1.00405 0.94170 1.02593 1.19665 0.96668 0.94892 0.95386 1.20404 1.07862 1.03271 0.90596 1.20861 0.98526 0.94766 0.99869 1.18251 1.09103 1.00229 0.82188 1.91214 1.89226 1.83139 1.51797 1.18008 0.92515 0.93501 0.90588 1.19665 1.21250 1.08734 1.03144 0.91476 1.26720 0.97982 0.98732 0.94203 1.69848 1.27160 1.35371 1.11544 0.85192 0.78074 0.77655 0.78757 1.18668 1.18075 1.18582 1.20836 1.03421 0.96440 0.97584 0.91938 0.90613 0.94507 0.92332 0.93901 0.90659 0.91926 0.84946 0.85580 0.89653 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 9.00 71.98 0.65 -3.22 15 2 C -0.05 -1.84 3.08 -11.54 -0.04 -1.88 15 3 C -0.13 -3.67 9.00 71.98 0.65 -3.02 15 4 C -0.07 -2.87 4.74 -20.15 -0.10 -2.97 15 5 C -0.20 -8.38 8.70 22.44 0.20 -8.19 15 6 C -0.12 -5.53 10.02 22.28 0.22 -5.31 15 7 C -0.08 -4.18 7.31 22.89 0.17 -4.01 15 8 F -0.17 -9.44 16.73 44.97 0.75 -8.69 15 9 C 0.06 3.22 5.58 -21.25 -0.12 3.10 15 10 C -0.50 -28.48 8.78 23.43 0.21 -28.27 15 11 H 0.07 3.85 7.74 -2.91 -0.02 3.83 15 12 C 0.04 2.05 5.13 85.25 0.44 2.49 15 13 N -0.81 -42.40 10.98 21.83 0.24 -42.16 15 14 Si 0.98 38.91 29.59 68.60 2.03 40.94 15 15 H -0.26 -10.03 7.11 99.48 0.71 -9.33 15 16 H -0.26 -9.34 7.11 99.48 0.71 -8.63 15 17 H -0.26 -10.35 7.11 99.48 0.71 -9.64 15 18 C -0.16 -8.51 8.25 22.48 0.19 -8.32 15 19 H 0.06 1.70 7.37 -2.39 -0.02 1.68 15 20 H 0.07 1.76 8.14 -2.39 -0.02 1.74 15 21 H 0.04 1.19 8.14 -2.39 -0.02 1.17 15 22 H 0.06 2.11 7.84 -2.39 -0.02 2.09 15 23 H 0.04 1.26 8.14 -2.39 -0.02 1.24 15 24 H 0.07 1.66 8.14 -2.39 -0.02 1.65 15 25 H 0.06 1.63 7.36 -2.39 -0.02 1.61 15 26 H 0.13 4.50 7.06 -2.91 -0.02 4.48 15 27 H 0.13 4.94 8.06 -2.91 -0.02 4.92 15 28 H 0.29 13.58 8.30 -92.71 -0.77 12.81 15 29 H 0.11 5.92 6.03 -2.91 -0.02 5.90 15 Total: -1.00 -60.63 250.56 6.62 -54.01 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 1.14 Total: 15.51 kcal Atomic # 6 Polarization: -62.07 SS G_CDS: 2.46 Total: -59.60 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.24 Total: -42.16 kcal Atomic # 9 Polarization: -9.44 SS G_CDS: 0.75 Total: -8.69 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -60.63 6.62 -54.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257950350.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.053 kcal (2) G-P(sol) polarization free energy of solvation -60.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds