Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.46987 * 2 1 4 4 C 1.38624 * 119.99988 * 180.02562 * 3 2 1 5 5 C 1.39239 * 120.48463 * 359.97438 * 4 3 2 6 6 C 1.39195 * 118.25201 * 180.02562 * 5 4 3 7 7 N 1.38598 * 120.49435 * 179.72456 * 6 5 4 8 8 C 1.36944 * 119.99542 * 0.02562 * 7 6 5 9 9 H 1.07993 * 120.00704 * 359.97438 * 8 7 6 10 10 C 1.38849 * 119.99742 * 180.02562 * 8 7 6 11 11 N 1.31544 * 120.00045 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99959 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47171 * 90.00273 * 12 10 8 14 14 H 1.48501 * 109.47050 * 210.00537 * 12 10 8 15 15 H 1.48504 * 109.46863 * 330.00452 * 12 10 8 16 16 N 1.33260 * 119.01611 * 0.02562 * 6 5 4 17 17 C 1.31690 * 120.88099 * 359.97438 * 16 6 5 18 18 N 1.31788 * 121.93008 * 0.02562 * 17 16 6 19 19 H 1.08999 * 109.46962 * 300.00016 * 1 2 3 20 20 H 1.08997 * 109.47423 * 59.99790 * 1 2 3 21 21 H 1.09002 * 109.47168 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46781 * 240.00731 * 2 1 3 23 23 H 1.08997 * 109.47423 * 120.00210 * 2 1 3 24 24 H 0.96996 * 120.00274 * 0.02562 * 3 2 1 25 25 H 1.07995 * 120.87750 * 0.04734 * 5 4 3 26 26 H 0.96993 * 120.00580 * 180.02562 * 7 6 5 27 27 H 0.96997 * 119.99802 * 179.97438 * 11 10 8 28 28 H 1.07999 * 119.03391 * 179.97438 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3812 1.6346 -0.0005 5 6 4.2949 0.5840 -0.0005 6 6 5.6525 0.8915 -0.0005 7 7 6.6023 -0.1179 0.0052 8 6 6.2077 -1.4292 0.0104 9 1 5.1565 -1.6769 0.0104 10 6 7.1591 -2.4405 0.0167 11 7 6.7801 -3.7001 0.0222 12 14 8.9774 -2.0121 0.0173 13 1 9.4571 -1.8920 1.4175 14 1 9.7382 -3.0821 -0.6766 15 1 9.1822 -0.7217 -0.6886 16 7 6.0255 2.1708 0.0000 17 6 5.1296 3.1361 0.0000 18 7 3.8357 2.8861 0.0000 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8932 -0.5137 -0.8901 23 1 1.8933 -0.5138 0.8899 24 1 1.3880 2.1185 0.0004 25 1 3.9593 -0.4425 -0.0009 26 1 7.5464 0.1044 0.0055 27 1 7.4448 -4.4065 0.0262 28 1 5.4652 4.1626 0.0008 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258610720.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = 51.931398 kcal Electronic energy + Delta-G solvation = -13125.312076 eV Core-core repulsion = 10790.333679 eV Total energy + Delta-G solvation = -2334.978398 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.71175 -36.43388 -35.50501 -32.52507 -31.62132 -29.84851 -28.35507 -25.07977 -23.54300 -21.71876 -21.41168 -18.53708 -17.43069 -16.41627 -15.02284 -14.89839 -14.81913 -14.26699 -13.73729 -13.72312 -13.35344 -12.97224 -12.21119 -12.10247 -11.97394 -11.61718 -11.50199 -10.88608 -10.70646 -10.23465 -9.92960 -9.39557 -9.03877 -8.17028 -7.70153 -7.25434 -6.56069 -3.92513 2.31066 2.60949 3.05671 3.06277 3.09429 3.65902 3.96611 4.53343 4.77066 5.12861 5.19761 5.27872 5.32100 5.44102 5.81240 5.95005 6.07545 6.15881 6.18514 6.62018 6.70091 7.05824 7.37350 7.59669 7.80642 8.12317 8.33938 8.52389 9.10839 9.15479 9.56881 10.54432 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032303 B = 0.009594 C = 0.007438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.581484 B = 2917.644484 C = 3763.775864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.125 3.875 3 N -0.727 5.727 4 C 0.445 3.555 5 C -0.363 4.363 6 C 0.412 3.588 7 N -0.553 5.553 8 C -0.305 4.305 9 H 0.120 0.880 10 C 0.046 3.954 11 N -0.870 5.870 12 Si 0.882 3.118 13 H -0.267 1.267 14 H -0.274 1.274 15 H -0.264 1.264 16 N -0.633 5.633 17 C 0.359 3.641 18 N -0.651 5.651 19 H 0.059 0.941 20 H 0.059 0.941 21 H 0.072 0.928 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.397 0.603 25 H 0.131 0.869 26 H 0.383 0.617 27 H 0.278 0.722 28 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.574 5.716 -0.022 8.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.000 4.000 3 N -0.362 5.362 4 C 0.209 3.791 5 C -0.399 4.399 6 C 0.166 3.834 7 N -0.164 5.164 8 C -0.435 4.435 9 H 0.137 0.863 10 C -0.160 4.160 11 N -0.507 5.507 12 Si 0.708 3.292 13 H -0.193 1.193 14 H -0.199 1.199 15 H -0.189 1.189 16 N -0.365 5.365 17 C 0.066 3.934 18 N -0.385 5.385 19 H 0.078 0.922 20 H 0.078 0.922 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.231 0.769 25 H 0.149 0.851 26 H 0.219 0.781 27 H 0.089 0.911 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.228 5.756 -0.019 8.481 hybrid contribution 0.806 -0.535 -0.013 0.967 sum -5.422 5.222 -0.032 7.527 Atomic orbital electron populations 1.21961 0.94934 1.02807 1.02184 1.21251 0.93742 0.82997 1.01970 1.44222 1.02903 1.07173 1.81869 1.18085 0.84693 0.89186 0.87150 1.21011 0.92124 0.99576 1.27199 1.17920 0.87462 0.86220 0.91770 1.40951 1.05734 1.03945 1.65730 1.19414 0.96773 0.78703 1.48583 0.86262 1.24997 0.99196 0.94853 0.96922 1.69655 1.35155 0.98705 1.47143 0.86577 0.84216 0.79032 0.79397 1.19252 1.19875 1.18895 1.67746 1.39817 0.99428 1.29505 1.23805 0.83393 0.97463 0.88731 1.67733 1.17993 1.20645 1.32125 0.92231 0.92238 0.90956 0.91951 0.91942 0.76863 0.85111 0.78137 0.91132 0.80680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 10.03 37.16 0.37 -1.26 15 2 C 0.13 1.75 5.64 -4.04 -0.02 1.73 15 3 N -0.73 -11.78 5.71 -60.32 -0.34 -12.12 15 4 C 0.44 9.06 7.70 -154.71 -1.19 7.87 15 5 C -0.36 -8.23 8.62 -38.85 -0.33 -8.57 15 6 C 0.41 9.87 7.67 -154.65 -1.19 8.68 15 7 N -0.55 -13.63 5.24 -11.04 -0.06 -13.69 15 8 C -0.31 -8.05 10.05 -15.04 -0.15 -8.20 15 9 H 0.12 3.30 5.96 -52.49 -0.31 2.99 15 10 C 0.05 1.21 5.50 -17.45 -0.10 1.11 15 11 N -0.87 -23.84 13.96 55.49 0.77 -23.06 15 12 Si 0.88 19.45 27.74 -169.99 -4.71 14.73 15 13 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 14 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 15 H -0.26 -5.64 6.52 56.52 0.37 -5.27 15 16 N -0.63 -14.18 10.47 -13.86 -0.15 -14.32 15 17 C 0.36 7.10 12.28 -92.25 -1.13 5.97 15 18 N -0.65 -13.16 10.47 -13.87 -0.15 -13.31 15 19 H 0.06 0.56 8.14 -51.93 -0.42 0.14 15 20 H 0.06 0.56 8.14 -51.93 -0.42 0.14 15 21 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.06 0.93 7.97 -51.93 -0.41 0.52 15 23 H 0.06 0.93 7.97 -51.93 -0.41 0.52 15 24 H 0.40 5.66 8.60 -40.82 -0.35 5.31 15 25 H 0.13 3.00 4.86 -52.49 -0.25 2.74 15 26 H 0.38 9.06 5.88 -40.82 -0.24 8.82 15 27 H 0.28 7.08 8.31 -40.82 -0.34 6.74 15 28 H 0.18 2.71 8.06 -52.49 -0.42 2.28 15 LS Contribution 243.83 15.07 3.67 3.67 Total: -1.00 -29.05 243.83 -7.55 -36.60 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -2.85 Total: 14.18 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -3.74 Total: 7.32 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: 0.08 Total: -76.50 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.71 Total: 14.73 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.05 -7.55 -36.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258610720.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.529 kcal (2) G-P(sol) polarization free energy of solvation -29.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds