Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.46987 * 2 1 4 4 C 1.38624 * 119.99988 * 180.02562 * 3 2 1 5 5 C 1.39239 * 120.48463 * 359.97438 * 4 3 2 6 6 C 1.39195 * 118.25201 * 180.02562 * 5 4 3 7 7 N 1.38598 * 120.49435 * 179.72456 * 6 5 4 8 8 C 1.36944 * 119.99542 * 0.02562 * 7 6 5 9 9 H 1.07993 * 120.00704 * 359.97438 * 8 7 6 10 10 C 1.38849 * 119.99742 * 180.02562 * 8 7 6 11 11 N 1.31544 * 120.00045 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99959 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47171 * 90.00273 * 12 10 8 14 14 H 1.48501 * 109.47050 * 210.00537 * 12 10 8 15 15 H 1.48504 * 109.46863 * 330.00452 * 12 10 8 16 16 N 1.33260 * 119.01611 * 0.02562 * 6 5 4 17 17 C 1.31690 * 120.88099 * 359.97438 * 16 6 5 18 18 N 1.31788 * 121.93008 * 0.02562 * 17 16 6 19 19 H 1.08999 * 109.46962 * 300.00016 * 1 2 3 20 20 H 1.08997 * 109.47423 * 59.99790 * 1 2 3 21 21 H 1.09002 * 109.47168 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46781 * 240.00731 * 2 1 3 23 23 H 1.08997 * 109.47423 * 120.00210 * 2 1 3 24 24 H 0.96996 * 120.00274 * 0.02562 * 3 2 1 25 25 H 1.07995 * 120.87750 * 0.04734 * 5 4 3 26 26 H 0.96993 * 120.00580 * 180.02562 * 7 6 5 27 27 H 0.96997 * 119.99802 * 179.97438 * 11 10 8 28 28 H 1.07999 * 119.03391 * 179.97438 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3812 1.6346 -0.0005 5 6 4.2949 0.5840 -0.0005 6 6 5.6525 0.8915 -0.0005 7 7 6.6023 -0.1179 0.0052 8 6 6.2077 -1.4292 0.0104 9 1 5.1565 -1.6769 0.0104 10 6 7.1591 -2.4405 0.0167 11 7 6.7801 -3.7001 0.0222 12 14 8.9774 -2.0121 0.0173 13 1 9.4571 -1.8920 1.4175 14 1 9.7382 -3.0821 -0.6766 15 1 9.1822 -0.7217 -0.6886 16 7 6.0255 2.1708 0.0000 17 6 5.1296 3.1361 0.0000 18 7 3.8357 2.8861 0.0000 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8932 -0.5137 -0.8901 23 1 1.8933 -0.5138 0.8899 24 1 1.3880 2.1185 0.0004 25 1 3.9593 -0.4425 -0.0009 26 1 7.5464 0.1044 0.0055 27 1 7.4448 -4.4065 0.0262 28 1 5.4652 4.1626 0.0008 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258610720.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = 33.161275 kcal Electronic energy + Delta-G solvation = -13126.126010 eV Core-core repulsion = 10790.333679 eV Total energy + Delta-G solvation = -2335.792331 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.40882 -38.02227 -37.14820 -34.37239 -33.17366 -31.46074 -29.83570 -26.96595 -25.00570 -23.20504 -23.02950 -20.41135 -19.08502 -18.11474 -16.80952 -16.35954 -16.18124 -15.96172 -15.28750 -15.28044 -14.95465 -14.78868 -14.07843 -13.58880 -13.09095 -12.87917 -12.66323 -12.54738 -12.40381 -12.05720 -11.48322 -11.15577 -10.90162 -9.88112 -9.45503 -8.88077 -8.51826 -5.95045 0.61986 0.87143 1.29164 1.34019 1.37236 2.14349 2.26437 2.73527 2.88305 3.45430 3.78562 4.08385 4.22977 4.23251 4.43531 4.53517 4.85020 4.95749 4.99726 5.06229 5.23176 5.40325 5.57452 5.82779 6.05636 6.48177 6.55946 6.85216 7.22184 7.31126 7.82259 8.62157 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032303 B = 0.009594 C = 0.007438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.581484 B = 2917.644484 C = 3763.775864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.120 3.880 3 N -0.710 5.710 4 C 0.448 3.552 5 C -0.388 4.388 6 C 0.405 3.595 7 N -0.567 5.567 8 C -0.315 4.315 9 H 0.091 0.909 10 C -0.001 4.001 11 N -0.915 5.915 12 Si 0.947 3.053 13 H -0.261 1.261 14 H -0.268 1.268 15 H -0.253 1.253 16 N -0.646 5.646 17 C 0.361 3.639 18 N -0.646 5.646 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.087 0.913 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.410 0.590 25 H 0.118 0.882 26 H 0.387 0.613 27 H 0.282 0.718 28 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 7.624 -0.040 10.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.004 4.004 3 N -0.344 5.344 4 C 0.209 3.791 5 C -0.423 4.423 6 C 0.161 3.839 7 N -0.180 5.180 8 C -0.445 4.445 9 H 0.109 0.891 10 C -0.202 4.202 11 N -0.554 5.554 12 Si 0.770 3.230 13 H -0.186 1.186 14 H -0.192 1.192 15 H -0.177 1.177 16 N -0.378 5.378 17 C 0.069 3.931 18 N -0.380 5.380 19 H 0.089 0.911 20 H 0.089 0.911 21 H 0.105 0.895 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.247 0.753 25 H 0.136 0.864 26 H 0.223 0.777 27 H 0.092 0.908 28 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -6.694 7.707 -0.038 10.208 hybrid contribution 0.690 -0.945 -0.006 1.171 sum -6.003 6.762 -0.043 9.042 Atomic orbital electron populations 1.21906 0.91289 1.04209 1.03312 1.21411 0.96651 0.81566 1.00777 1.44366 1.01558 1.08662 1.79843 1.18317 0.86114 0.88769 0.85909 1.21060 0.92519 0.99783 1.28961 1.18282 0.87835 0.86960 0.90798 1.40774 1.05961 1.03330 1.67978 1.19228 0.95815 0.79981 1.49432 0.89149 1.25722 1.03605 0.94452 0.96466 1.69761 1.36753 0.99736 1.49109 0.85573 0.78510 0.79238 0.79719 1.18582 1.19244 1.17748 1.67847 1.40614 0.98947 1.30432 1.24797 0.83002 0.98833 0.86425 1.67921 1.18337 1.20005 1.31715 0.91064 0.91068 0.89462 0.93213 0.93215 0.75291 0.86433 0.77735 0.90821 0.76097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 10.03 71.98 0.72 -1.94 15 2 C 0.12 3.28 5.64 86.38 0.49 3.77 15 3 N -0.71 -21.84 5.71 -344.74 -1.97 -23.81 15 4 C 0.45 17.71 7.70 132.99 1.02 18.74 15 5 C -0.39 -17.76 8.62 22.74 0.20 -17.57 15 6 C 0.41 19.44 7.67 132.96 1.02 20.46 15 7 N -0.57 -28.28 5.24 -188.84 -0.99 -29.27 15 8 C -0.31 -17.21 10.05 84.04 0.84 -16.37 15 9 H 0.09 5.33 5.96 -2.91 -0.02 5.31 15 10 C 0.00 -0.05 5.50 84.88 0.47 0.42 15 11 N -0.92 -51.69 13.96 21.65 0.30 -51.39 15 12 Si 0.95 40.28 27.74 68.60 1.90 42.18 15 13 H -0.26 -10.76 7.11 99.48 0.71 -10.05 15 14 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 15 H -0.25 -10.19 6.52 99.48 0.65 -9.54 15 16 N -0.65 -27.95 10.47 -197.77 -2.07 -30.02 15 17 C 0.36 13.27 12.28 180.92 2.22 15.49 15 18 N -0.65 -24.53 10.47 -197.80 -2.07 -26.61 15 19 H 0.07 1.13 8.14 -2.39 -0.02 1.11 15 20 H 0.07 1.13 8.14 -2.39 -0.02 1.11 15 21 H 0.09 1.34 8.14 -2.39 -0.02 1.32 15 22 H 0.05 1.50 7.97 -2.39 -0.02 1.48 15 23 H 0.05 1.50 7.97 -2.39 -0.02 1.48 15 24 H 0.41 10.59 8.60 -92.71 -0.80 9.79 15 25 H 0.12 5.66 4.86 -2.91 -0.01 5.64 15 26 H 0.39 18.18 5.88 -92.71 -0.54 17.63 15 27 H 0.28 14.71 8.31 -92.71 -0.77 13.94 15 28 H 0.22 5.86 8.06 -2.91 -0.02 5.84 15 Total: -1.00 -63.05 243.83 1.89 -61.16 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: -0.20 Total: 34.76 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 6.98 Total: 23.00 kcal Atomic # 7 Polarization: -154.30 SS G_CDS: -6.80 Total: -161.10 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.90 Total: 42.18 kcal Total: -63.05 1.89 -61.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258610720.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.322 kcal (2) G-P(sol) polarization free energy of solvation -63.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds