Wall clock time and date at job start Mon Mar 30 2020 02:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38614 * 119.99813 * 2 1 4 4 C 1.39240 * 120.48787 * 359.44714 * 3 2 1 5 5 C 1.39200 * 118.25226 * 179.78325 * 4 3 2 6 6 N 1.38602 * 120.49253 * 180.21301 * 5 4 3 7 7 C 1.36942 * 119.99852 * 0.28169 * 6 5 4 8 8 H 1.08005 * 120.00244 * 359.97438 * 7 6 5 9 9 C 1.38842 * 120.00048 * 179.97438 * 7 6 5 10 10 N 1.31538 * 119.99812 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00102 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47182 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46895 * 120.00307 * 11 9 7 14 14 H 1.48499 * 109.47333 * 240.00211 * 11 9 7 15 15 N 1.33258 * 119.01504 * 0.49187 * 5 4 3 16 16 C 1.31687 * 120.88306 * 359.74711 * 15 5 4 17 17 C 1.50697 * 119.03562 * 179.97438 * 16 15 5 18 18 N 1.31791 * 121.92901 * 359.97438 * 16 15 5 19 19 H 1.08998 * 109.47377 * 180.27927 * 1 2 3 20 20 H 1.09009 * 109.47454 * 300.27442 * 1 2 3 21 21 H 1.08998 * 109.47492 * 60.27737 * 1 2 3 22 22 H 0.97001 * 119.99790 * 179.71908 * 2 1 3 23 23 H 1.07999 * 120.87436 * 359.97438 * 4 3 2 24 24 H 0.96999 * 119.99888 * 180.27834 * 6 5 4 25 25 H 0.97003 * 120.00131 * 179.97438 * 10 9 7 26 26 H 1.09005 * 109.46871 * 270.02008 * 17 16 15 27 27 H 1.08998 * 109.47096 * 30.01246 * 17 16 15 28 28 H 1.09004 * 109.47399 * 150.02027 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1580 1.2005 0.0000 4 6 1.4721 2.4121 -0.0116 5 6 2.2145 3.5896 -0.0064 6 7 1.5794 4.8215 -0.0130 7 6 0.2115 4.8866 -0.0189 8 1 -0.3724 3.9780 -0.0188 9 6 -0.4247 6.1206 -0.0250 10 7 0.2864 7.2272 -0.0256 11 14 -2.2906 6.2094 -0.0337 12 1 -2.8516 4.8344 -0.0321 13 1 -2.7572 6.9354 1.1748 14 1 -2.7463 6.9290 -1.2501 15 7 3.5450 3.5148 -0.0007 16 6 4.1564 2.3485 0.0051 17 6 5.6629 2.3125 0.0108 18 7 3.4894 1.2119 0.0060 19 1 -0.3634 -1.0276 0.0050 20 1 -0.3634 0.5181 0.8876 21 1 -0.3634 0.5095 -0.8924 22 1 1.9500 -0.8401 0.0041 23 1 0.3925 2.4378 -0.0211 24 1 2.1038 5.6376 -0.0134 25 1 -0.1581 8.0894 -0.0302 26 1 6.0300 2.3011 -1.0155 27 1 6.0455 3.1950 0.5236 28 1 6.0030 1.4154 0.5283 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258635457.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:32 Heat of formation + Delta-G solvation = 48.550926 kcal Electronic energy + Delta-G solvation = -13203.209777 eV Core-core repulsion = 10868.084791 eV Total energy + Delta-G solvation = -2335.124986 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.65002 -36.02200 -35.38374 -32.44583 -30.95361 -29.96012 -27.15524 -25.91245 -25.02242 -21.42297 -20.93953 -18.19032 -17.12511 -16.52635 -14.85833 -14.59852 -14.44047 -14.02781 -13.74515 -13.45979 -13.20073 -12.69105 -12.20574 -11.85971 -11.76771 -11.62835 -11.43259 -10.90068 -10.60927 -10.43313 -9.76472 -9.31626 -8.91669 -8.02159 -7.56612 -7.13421 -6.64518 -3.90326 2.37538 2.72456 3.12173 3.14706 3.16518 3.75180 3.95844 4.77395 4.85009 5.22111 5.28026 5.42621 5.77790 5.80575 5.98595 6.14410 6.20068 6.29617 6.42912 6.71332 6.83213 7.15696 7.27497 7.57381 7.85919 8.15204 8.41565 8.73256 9.24500 9.34645 9.77102 10.52035 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.031955 B = 0.009938 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.009172 B = 2816.685021 C = 3672.245554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.733 5.733 3 C 0.445 3.555 4 C -0.378 4.378 5 C 0.405 3.595 6 N -0.522 5.522 7 C -0.302 4.302 8 H 0.104 0.896 9 C 0.025 3.975 10 N -0.883 5.883 11 Si 0.936 3.064 12 H -0.267 1.267 13 H -0.278 1.278 14 H -0.278 1.278 15 N -0.626 5.626 16 C 0.378 3.622 17 C -0.073 4.073 18 N -0.652 5.652 19 H 0.068 0.932 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.397 0.603 23 H 0.125 0.875 24 H 0.404 0.596 25 H 0.277 0.723 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 -8.915 0.044 8.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.367 5.367 3 C 0.210 3.790 4 C -0.414 4.414 5 C 0.157 3.843 6 N -0.129 5.129 7 C -0.433 4.433 8 H 0.122 0.878 9 C -0.180 4.180 10 N -0.520 5.520 11 Si 0.762 3.238 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.204 1.204 15 N -0.359 5.359 16 C 0.105 3.895 17 C -0.132 4.132 18 N -0.388 5.388 19 H 0.087 0.913 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.231 0.769 23 H 0.143 0.857 24 H 0.240 0.760 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.697 -8.485 0.043 8.514 hybrid contribution -1.595 0.244 -0.023 1.614 sum -0.898 -8.241 0.021 8.290 Atomic orbital electron populations 1.21446 0.79730 1.01427 1.01607 1.43924 1.05235 1.05149 1.82421 1.18032 0.88138 0.85580 0.87280 1.20874 1.00596 0.90837 1.29064 1.18054 0.87352 0.86642 0.92218 1.40721 1.06221 1.03541 1.62394 1.19777 0.80720 0.94388 1.48392 0.87814 1.25366 1.01189 0.94593 0.96852 1.69701 1.36694 0.98081 1.47504 0.85703 0.81185 0.78796 0.78091 1.19074 1.20406 1.20402 1.67578 1.09149 1.29227 1.29902 1.22077 0.96111 0.82658 0.88686 1.20348 0.87698 1.02622 1.02510 1.67510 1.06473 1.31411 1.33371 0.91331 0.92906 0.92900 0.76894 0.85684 0.75971 0.91339 0.90924 0.90642 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.38 9.95 59.85 0.60 1.98 15 2 N -0.73 -12.09 5.87 -67.10 -0.39 -12.48 15 3 C 0.45 9.43 7.70 -154.72 -1.19 8.24 15 4 C -0.38 -8.80 8.62 -38.85 -0.33 -9.13 15 5 C 0.40 10.22 7.67 -154.65 -1.19 9.04 15 6 N -0.52 -13.75 5.43 -11.04 -0.06 -13.81 15 7 C -0.30 -7.89 9.56 -15.05 -0.14 -8.04 15 8 H 0.10 2.60 5.73 -52.48 -0.30 2.30 15 9 C 0.02 0.64 5.50 -17.45 -0.10 0.54 15 10 N -0.88 -23.73 13.05 55.49 0.72 -23.00 15 11 Si 0.94 19.60 29.55 -169.99 -5.02 14.57 15 12 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 13 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 14 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 15 N -0.63 -15.10 10.36 -10.01 -0.10 -15.20 15 16 C 0.38 8.13 7.64 -157.29 -1.20 6.93 15 17 C -0.07 -1.17 10.31 36.00 0.37 -0.80 15 18 N -0.65 -14.01 10.36 -10.03 -0.10 -14.11 15 19 H 0.07 0.67 8.14 -51.93 -0.42 0.24 15 20 H 0.05 0.74 7.98 -51.92 -0.41 0.32 15 21 H 0.05 0.74 7.96 -51.93 -0.41 0.32 15 22 H 0.40 5.71 8.95 -40.82 -0.37 5.35 15 23 H 0.13 2.83 4.86 -52.49 -0.25 2.57 15 24 H 0.40 10.98 8.02 -40.82 -0.33 10.66 15 25 H 0.28 6.94 8.31 -40.82 -0.34 6.60 15 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 LS Contribution 247.30 15.07 3.73 3.73 Total: -1.00 -29.67 247.30 -7.32 -37.00 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -2.90 Total: 14.55 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -3.19 Total: 8.76 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: 0.06 Total: -78.60 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.67 -7.32 -37.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258635457.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.547 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds