Wall clock time and date at job start Mon Mar 30 2020 02:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46498 * 119.99934 * 2 1 4 4 C 1.50699 * 109.47116 * 269.72500 * 3 2 1 5 5 C 1.34852 * 125.89481 * 94.99690 * 4 3 2 6 6 C 1.40886 * 107.41548 * 180.02562 * 5 4 3 7 7 C 1.34846 * 107.42300 * 0.02562 * 6 5 4 8 8 N 1.36345 * 125.88670 * 274.69606 * 4 3 2 9 9 H 0.96996 * 125.63846 * 359.97438 * 8 4 3 10 10 C 1.34769 * 119.99599 * 179.71818 * 2 1 3 11 11 O 1.21691 * 119.99831 * 180.02562 * 10 2 1 12 12 C 1.46378 * 120.00562 * 0.02562 * 10 2 1 13 13 H 1.08003 * 119.99597 * 352.71313 * 12 10 2 14 14 C 1.40048 * 119.99877 * 172.70755 * 12 10 2 15 15 N 1.30670 * 120.00224 * 6.05677 * 14 12 10 16 16 Si 1.86803 * 119.99723 * 186.05093 * 14 12 10 17 17 H 1.48498 * 109.47105 * 94.97847 * 16 14 12 18 18 H 1.48492 * 109.47060 * 214.98241 * 16 14 12 19 19 H 1.48500 * 109.47084 * 334.98010 * 16 14 12 20 20 H 1.09000 * 109.46911 * 270.28066 * 1 2 3 21 21 H 1.09004 * 109.47001 * 30.27717 * 1 2 3 22 22 H 1.08994 * 109.46834 * 150.27879 * 1 2 3 23 23 H 1.09001 * 109.47163 * 29.72247 * 3 2 1 24 24 H 1.08992 * 109.47138 * 149.72036 * 3 2 1 25 25 H 1.08003 * 126.28736 * 0.02597 * 5 4 3 26 26 H 1.07999 * 126.28772 * 179.97438 * 6 5 4 27 27 H 1.08000 * 125.89450 * 180.02562 * 7 6 5 28 28 H 0.96998 * 120.00081 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4546 1.7003 -1.4208 5 6 1.6918 2.5487 -2.1397 6 6 2.2863 2.6767 -3.4105 7 6 3.3896 1.9014 -3.4201 8 7 3.5019 1.3049 -2.1992 9 1 4.2083 0.6972 -1.9300 10 6 2.1389 -1.1672 0.0057 11 8 3.3558 -1.1672 0.0062 12 6 1.4070 -2.4348 0.0114 13 1 0.3335 -2.4380 0.1296 14 6 2.0989 -3.6435 -0.1366 15 7 3.4053 -3.6497 -0.1609 16 14 1.1539 -5.2467 -0.2992 17 1 0.9832 -5.5770 -1.7368 18 1 1.9073 -6.3356 0.3729 19 1 -0.1799 -5.1018 0.3372 20 1 -0.3633 0.0050 1.0277 21 1 -0.3633 0.8875 -0.5182 22 1 -0.3633 -0.8924 -0.5095 23 1 1.6063 2.0296 0.5095 24 1 3.1477 1.1397 0.5181 25 1 0.7906 3.0397 -1.8031 26 1 1.9245 3.2836 -4.2273 27 1 4.0702 1.7788 -4.2496 28 1 3.8845 -4.4868 -0.2638 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258675441.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:09 Heat of formation + Delta-G solvation = -13.897660 kcal Electronic energy + Delta-G solvation = -13499.556560 eV Core-core repulsion = 11129.430849 eV Total energy + Delta-G solvation = -2370.125711 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.87929 -39.46828 -35.85508 -34.59728 -31.65264 -31.45785 -28.45717 -27.41617 -25.61486 -21.67602 -21.23269 -20.79605 -18.51215 -18.24987 -17.61544 -16.43168 -15.94772 -15.50459 -14.76300 -14.54872 -14.24176 -13.98330 -13.42185 -13.30300 -13.11331 -13.08886 -12.99200 -12.76797 -12.40887 -12.12391 -12.00718 -10.94119 -9.85344 -9.68558 -9.17050 -8.86077 -8.29905 -6.83794 1.37155 1.38553 1.42935 1.54813 2.13685 2.25185 2.45004 2.61714 3.06747 3.59471 4.21286 4.23874 4.42884 4.60005 4.63193 4.73248 4.88661 4.99011 5.06634 5.35859 5.41432 5.43905 5.73491 6.11171 6.24619 6.36832 6.40005 6.76123 6.87712 7.40516 8.45541 8.65488 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.042831 B = 0.009265 C = 0.008727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.576686 B = 3021.493706 C = 3207.580055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.645 5.645 3 C 0.187 3.813 4 C -0.008 4.008 5 C -0.204 4.204 6 C -0.216 4.216 7 C -0.030 4.030 8 N -0.556 5.556 9 H 0.410 0.590 10 C 0.541 3.459 11 O -0.626 6.626 12 C -0.571 4.571 13 H 0.089 0.911 14 C 0.031 3.969 15 N -0.820 5.820 16 Si 0.991 3.009 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.248 1.248 20 H 0.049 0.951 21 H 0.076 0.924 22 H 0.059 0.941 23 H 0.114 0.886 24 H 0.050 0.950 25 H 0.150 0.850 26 H 0.156 0.844 27 H 0.184 0.816 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.504 7.594 -3.630 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.381 5.381 3 C 0.063 3.937 4 C -0.123 4.123 5 C -0.229 4.229 6 C -0.240 4.240 7 C -0.161 4.161 8 N -0.149 5.149 9 H 0.246 0.754 10 C 0.347 3.653 11 O -0.513 6.513 12 C -0.607 4.607 13 H 0.107 0.893 14 C -0.184 4.184 15 N -0.449 5.449 16 Si 0.811 3.189 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.171 1.171 20 H 0.067 0.933 21 H 0.095 0.905 22 H 0.078 0.922 23 H 0.132 0.868 24 H 0.069 0.931 25 H 0.168 0.832 26 H 0.173 0.827 27 H 0.201 0.799 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.601 7.427 -3.566 9.436 hybrid contribution 0.338 -1.040 0.036 1.094 sum -4.263 6.387 -3.531 8.452 Atomic orbital electron populations 1.21557 0.79454 1.02412 1.00876 1.47929 1.07024 1.04594 1.78513 1.19610 0.97378 0.86728 0.89937 1.21219 0.92223 1.02417 0.96396 1.20918 1.02302 1.04445 0.95227 1.21154 0.98144 1.05846 0.98902 1.22375 1.03068 1.01446 0.89247 1.42321 1.22630 1.37631 1.12350 0.75394 1.18593 0.86729 0.84092 0.75910 1.90503 1.15858 1.87537 1.57421 1.21528 0.95471 0.90234 1.53461 0.89292 1.26916 0.95520 1.04517 0.91416 1.70173 1.09598 1.28733 1.36446 0.85091 0.79110 0.75531 0.79141 1.19066 1.19780 1.17074 0.93275 0.90548 0.92245 0.86834 0.93145 0.83243 0.82660 0.79905 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.58 10.10 127.77 1.29 4.87 15 2 N -0.64 -29.23 2.86 -856.26 -2.45 -31.67 15 3 C 0.19 7.37 5.94 85.63 0.51 7.88 15 4 C -0.01 -0.29 6.75 41.08 0.28 -0.01 15 5 C -0.20 -6.67 10.77 22.14 0.24 -6.43 15 6 C -0.22 -6.57 10.86 22.14 0.24 -6.33 15 7 C -0.03 -0.94 11.94 83.21 0.99 0.05 15 8 N -0.56 -21.30 6.08 -182.76 -1.11 -22.41 15 9 H 0.41 16.84 8.96 -92.71 -0.83 16.01 15 10 C 0.54 30.96 7.60 86.36 0.66 31.61 15 11 O -0.63 -40.25 14.63 -4.32 -0.06 -40.31 15 12 C -0.57 -32.14 8.65 24.83 0.21 -31.92 15 13 H 0.09 4.54 6.14 -2.91 -0.02 4.52 15 14 C 0.03 1.74 5.49 85.30 0.47 2.21 15 15 N -0.82 -49.58 11.86 21.84 0.26 -49.33 15 16 Si 0.99 40.92 29.56 68.60 2.03 42.94 15 17 H -0.27 -10.59 7.11 99.48 0.71 -9.88 15 18 H -0.27 -10.88 7.11 99.48 0.71 -10.17 15 19 H -0.25 -9.47 7.11 99.48 0.71 -8.76 15 20 H 0.05 1.59 8.14 -2.39 -0.02 1.57 15 21 H 0.08 2.23 8.07 -2.38 -0.02 2.21 15 22 H 0.06 2.26 6.20 -2.39 -0.01 2.25 15 23 H 0.11 3.52 8.07 -2.39 -0.02 3.50 15 24 H 0.05 2.22 7.42 -2.39 -0.02 2.20 15 25 H 0.15 4.08 8.06 -2.91 -0.02 4.06 15 26 H 0.16 3.74 8.06 -2.91 -0.02 3.71 15 27 H 0.18 4.52 8.06 -2.91 -0.02 4.49 15 28 H 0.27 15.00 8.29 -92.71 -0.77 14.23 15 Total: -1.00 -72.81 249.88 3.90 -68.91 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.34 Total: 29.94 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 4.89 Total: 1.94 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -3.30 Total: -103.42 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -0.06 Total: -40.31 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Total: -72.81 3.90 -68.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258675441.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.010 kcal (2) G-P(sol) polarization free energy of solvation -72.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds