Wall clock time and date at job start Mon Mar 30 2020 02:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34784 * 119.99854 * 2 1 4 4 O 1.21310 * 119.99833 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00002 * 359.97438 * 3 2 1 6 6 C 1.50703 * 109.46607 * 180.02562 * 5 3 2 7 7 H 1.07996 * 120.00190 * 0.02562 * 6 5 3 8 8 C 1.37877 * 119.99458 * 180.02562 * 6 5 3 9 9 N 1.31520 * 120.00201 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99763 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47140 * 90.00268 * 10 8 6 12 12 H 1.48501 * 109.47055 * 209.99939 * 10 8 6 13 13 H 1.48499 * 109.47370 * 329.99763 * 10 8 6 14 14 C 1.40723 * 120.00060 * 180.02562 * 2 1 3 15 15 C 1.41243 * 126.34053 * 359.97438 * 14 2 1 16 16 C 1.34838 * 107.46841 * 180.02562 * 15 14 2 17 17 N 1.36316 * 108.36294 * 359.97438 * 16 15 14 18 18 H 0.97001 * 125.61656 * 179.97438 * 17 16 15 19 19 C 1.35306 * 126.34324 * 180.31147 * 14 2 1 20 20 H 1.09004 * 109.46964 * 270.00534 * 1 2 3 21 21 H 1.09004 * 109.46951 * 29.99500 * 1 2 3 22 22 H 1.08995 * 109.47638 * 150.00007 * 1 2 3 23 23 H 1.09000 * 109.47367 * 300.00321 * 5 3 2 24 24 H 1.09001 * 109.46519 * 60.00577 * 5 3 2 25 25 H 0.96995 * 119.99570 * 180.02562 * 9 8 6 26 26 H 1.08000 * 126.27135 * 0.03343 * 15 14 2 27 27 H 1.07996 * 125.81788 * 179.97438 * 16 15 14 28 28 H 1.08002 * 125.95733 * 359.97438 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3520 1.1673 -0.0005 5 6 1.3853 2.4724 -0.0006 6 6 2.3647 3.6178 -0.0011 7 1 3.4265 3.4204 -0.0014 8 6 1.9051 4.9177 -0.0011 9 7 0.6120 5.1580 -0.0002 10 14 3.1190 6.3375 -0.0011 11 1 3.4407 6.7138 -1.4011 12 1 2.5190 7.5017 0.6989 13 1 4.3622 5.9259 0.6991 14 6 2.1686 -1.2187 -0.0005 15 6 1.6018 -2.5124 -0.0006 16 6 2.6175 -3.3993 -0.0006 17 7 3.7919 -2.7072 -0.0012 18 1 4.6789 -3.0998 -0.0009 19 6 3.5134 -1.3682 0.0053 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8901 -0.5138 22 1 -0.3634 -0.8899 -0.5138 23 1 0.7590 2.5299 -0.8908 24 1 0.7584 2.5302 0.8892 25 1 0.2888 6.0725 -0.0006 26 1 0.5479 -2.7482 -0.0008 27 1 2.5176 -4.4746 -0.0003 28 1 4.2402 -0.5694 0.0109 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258704400.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:52 Heat of formation + Delta-G solvation = -8.652382 kcal Electronic energy + Delta-G solvation = -13248.252951 eV Core-core repulsion = 10878.354692 eV Total energy + Delta-G solvation = -2369.898259 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.11733 -40.23005 -36.41399 -35.14226 -31.82883 -30.67367 -29.48913 -27.30948 -25.76301 -22.63036 -21.16156 -19.84549 -18.99556 -18.53299 -17.11410 -16.76609 -16.64820 -15.92547 -14.86835 -14.58220 -14.51214 -14.13098 -14.03392 -13.63144 -13.27442 -13.06351 -13.01259 -12.76802 -12.60060 -12.02617 -11.41132 -11.13049 -10.62482 -10.42437 -9.28353 -8.43991 -8.25353 -6.32875 1.33428 1.40176 1.41342 1.53776 1.65558 2.06183 2.41096 2.42937 2.79606 3.09761 3.99649 4.31295 4.43006 4.61703 4.67220 4.73643 4.89030 5.00561 5.05220 5.23189 5.24192 5.56722 5.72676 5.95377 6.11685 6.29291 6.61245 6.79799 6.91717 7.32620 7.44489 8.86960 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.062097 B = 0.007558 C = 0.006771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.801727 B = 3703.914547 C = 4134.268392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.546 5.546 3 C 0.505 3.495 4 O -0.568 6.568 5 C 0.019 3.981 6 C -0.539 4.539 7 H 0.055 0.945 8 C 0.011 3.989 9 N -0.923 5.923 10 Si 0.966 3.034 11 H -0.271 1.271 12 H -0.273 1.273 13 H -0.275 1.275 14 C 0.035 3.965 15 C -0.240 4.240 16 C 0.022 3.978 17 N -0.548 5.548 18 H 0.431 0.569 19 C -0.067 4.067 20 H 0.068 0.932 21 H 0.074 0.926 22 H 0.099 0.901 23 H 0.044 0.956 24 H 0.042 0.958 25 H 0.268 0.732 26 H 0.157 0.843 27 H 0.213 0.787 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 -16.124 -0.109 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.272 5.272 3 C 0.297 3.703 4 O -0.447 6.447 5 C -0.020 4.020 6 C -0.577 4.577 7 H 0.073 0.927 8 C -0.188 4.188 9 N -0.563 5.563 10 Si 0.790 3.210 11 H -0.196 1.196 12 H -0.197 1.197 13 H -0.199 1.199 14 C -0.063 4.063 15 C -0.266 4.266 16 C -0.111 4.111 17 N -0.147 5.147 18 H 0.271 0.729 19 C -0.199 4.199 20 H 0.086 0.914 21 H 0.093 0.907 22 H 0.118 0.882 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.175 0.825 27 H 0.230 0.770 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.594 -15.971 -0.108 15.983 hybrid contribution 0.698 0.961 0.017 1.188 sum 1.292 -15.010 -0.091 15.065 Atomic orbital electron populations 1.22008 0.76579 1.04510 1.03177 1.45342 1.08293 1.03141 1.70388 1.21778 0.88070 0.86201 0.74214 1.90362 1.16101 1.87420 1.50822 1.19031 0.96103 0.88194 0.98687 1.21371 0.93610 0.91263 1.51431 0.92665 1.25789 0.97259 1.01325 0.94378 1.70029 1.13861 1.21398 1.50999 0.85435 0.78766 0.78169 0.78583 1.19640 1.19745 1.19949 1.17832 0.91933 0.86524 1.10043 1.20878 1.00514 0.89070 1.16157 1.22387 0.83300 0.99207 1.06235 1.41921 1.09508 1.04821 1.58448 0.72947 1.22102 0.96536 0.86360 1.14889 0.91357 0.90692 0.88224 0.93839 0.94000 0.92309 0.82503 0.77021 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.42 10.00 127.77 1.28 3.70 15 2 N -0.55 -22.03 3.12 -654.68 -2.04 -24.07 15 3 C 0.51 25.28 7.64 87.66 0.67 25.95 15 4 O -0.57 -31.31 12.64 -3.12 -0.04 -31.35 15 5 C 0.02 1.03 4.01 29.10 0.12 1.15 15 6 C -0.54 -32.55 8.92 25.60 0.23 -32.32 15 7 H 0.06 3.50 6.75 -2.91 -0.02 3.48 15 8 C 0.01 0.65 5.46 84.65 0.46 1.12 15 9 N -0.92 -54.54 13.29 21.45 0.28 -54.26 15 10 Si 0.97 45.91 29.54 68.60 2.03 47.93 15 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 13 H -0.27 -13.07 7.11 99.48 0.71 -12.36 15 14 C 0.04 1.29 6.67 37.77 0.25 1.54 15 15 C -0.24 -6.39 9.98 22.23 0.22 -6.17 15 16 C 0.02 0.44 11.93 83.22 0.99 1.44 15 17 N -0.55 -13.12 6.09 -193.94 -1.18 -14.30 15 18 H 0.43 6.97 8.96 -92.71 -0.83 6.14 15 19 C -0.07 -2.39 10.82 83.25 0.90 -1.49 15 20 H 0.07 1.91 8.14 -2.38 -0.02 1.89 15 21 H 0.07 2.42 6.44 -2.38 -0.02 2.40 15 22 H 0.10 2.36 6.96 -2.39 -0.02 2.34 15 23 H 0.04 2.35 7.40 -2.39 -0.02 2.34 15 24 H 0.04 2.28 8.11 -2.39 -0.02 2.26 15 25 H 0.27 14.79 8.31 -92.71 -0.77 14.02 15 26 H 0.16 3.34 7.40 -2.91 -0.02 3.31 15 27 H 0.21 2.15 8.06 -2.91 -0.02 2.12 15 28 H 0.16 6.68 5.85 -2.91 -0.02 6.66 15 Total: -1.00 -74.32 243.80 4.52 -69.80 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.35 Total: 11.34 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 5.12 Total: -5.09 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -2.94 Total: -92.63 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.04 Total: -31.35 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -74.32 4.52 -69.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258704400.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.148 kcal (2) G-P(sol) polarization free energy of solvation -74.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds