Wall clock time and date at job start Mon Mar 30 2020 02:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21303 * 120.00450 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 C 1.50703 * 109.47148 * 180.28037 * 5 3 2 7 7 H 1.08001 * 120.00037 * 359.97438 * 6 5 3 8 8 C 1.37879 * 119.99824 * 179.97438 * 6 5 3 9 9 N 1.31510 * 120.00072 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99575 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46923 * 60.00167 * 10 8 6 12 12 H 1.48504 * 109.46709 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47176 * 299.99915 * 10 8 6 14 14 C 1.39671 * 119.99798 * 179.97438 * 2 1 3 15 15 C 1.35568 * 125.95549 * 359.97438 * 14 2 1 16 16 C 1.40910 * 107.41242 * 179.97438 * 15 14 2 17 17 C 1.34793 * 107.53889 * 0.02562 * 16 15 14 18 18 N 1.36553 * 125.95122 * 179.69660 * 14 2 1 19 19 H 0.97001 * 125.67524 * 359.97438 * 18 14 2 20 20 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 21 21 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 22 22 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 23 23 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 24 24 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 25 25 H 0.97006 * 119.99375 * 180.02562 * 9 8 6 26 26 H 1.08001 * 126.29290 * 0.02562 * 15 14 2 27 27 H 1.08007 * 126.22902 * 179.97438 * 16 15 14 28 28 H 1.07997 * 125.85061 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 6 2.3648 3.6177 -0.0120 7 1 3.4266 3.4204 -0.0106 8 6 1.9051 4.9176 -0.0188 9 7 0.6122 5.1579 -0.0200 10 14 3.1191 6.3374 -0.0251 11 1 3.9737 6.2526 -1.2366 12 1 2.3766 7.6235 -0.0315 13 1 3.9720 6.2648 1.1884 14 6 2.1633 -1.2096 0.0005 15 6 1.6109 -2.4476 0.0016 16 6 2.6669 -3.3806 0.0012 17 6 3.8223 -2.6863 0.0005 18 7 3.5214 -1.3512 -0.0052 19 1 4.1658 -0.6262 -0.0108 20 1 -0.3633 -0.0001 -1.0276 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 0.7588 2.5257 -0.8967 24 1 0.7587 2.5344 0.8833 25 1 0.2889 6.0725 -0.0252 26 1 0.5554 -2.6767 0.0018 27 1 2.5684 -4.4562 0.0022 28 1 4.8153 -3.1108 0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258712604.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:50 Heat of formation + Delta-G solvation = -6.640991 kcal Electronic energy + Delta-G solvation = -13301.424170 eV Core-core repulsion = 10931.613132 eV Total energy + Delta-G solvation = -2369.811038 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.35592 -40.25253 -36.63276 -35.19428 -31.79678 -31.37770 -29.02337 -27.68137 -25.76644 -22.38441 -20.99768 -20.79202 -18.95229 -18.43733 -17.33181 -16.95478 -16.67769 -15.92999 -14.99759 -14.72378 -14.46374 -14.15566 -14.04847 -13.61502 -13.39923 -13.32681 -12.88723 -12.76413 -12.63885 -12.08974 -11.48601 -11.01093 -10.78554 -10.66494 -9.78021 -8.37311 -8.29676 -6.37763 1.06472 1.38648 1.40779 1.49082 1.72853 1.83936 2.25865 2.37976 2.69129 3.05926 3.92760 4.23412 4.46875 4.55119 4.59315 4.71945 4.85256 4.93948 5.09119 5.16466 5.25253 5.43864 5.68194 5.78071 6.01907 6.27299 6.48950 6.73286 6.80492 7.10912 7.31926 8.82035 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.061957 B = 0.007666 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.818128 B = 3651.709230 C = 4083.070390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.549 5.549 3 C 0.512 3.488 4 O -0.573 6.573 5 C 0.019 3.981 6 C -0.543 4.543 7 H 0.056 0.944 8 C 0.014 3.986 9 N -0.920 5.920 10 Si 0.964 3.036 11 H -0.273 1.273 12 H -0.273 1.273 13 H -0.273 1.273 14 C 0.220 3.780 15 C -0.236 4.236 16 C -0.190 4.190 17 C -0.034 4.034 18 N -0.569 5.569 19 H 0.418 0.582 20 H 0.077 0.923 21 H 0.105 0.895 22 H 0.084 0.916 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.269 0.731 26 H 0.157 0.843 27 H 0.166 0.834 28 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.567 -13.230 0.118 13.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.276 5.276 3 C 0.304 3.696 4 O -0.452 6.452 5 C -0.020 4.020 6 C -0.581 4.581 7 H 0.074 0.926 8 C -0.185 4.185 9 N -0.559 5.559 10 Si 0.789 3.211 11 H -0.198 1.198 12 H -0.198 1.198 13 H -0.198 1.198 14 C 0.015 3.985 15 C -0.264 4.264 16 C -0.214 4.214 17 C -0.163 4.163 18 N -0.175 5.175 19 H 0.261 0.739 20 H 0.095 0.905 21 H 0.124 0.876 22 H 0.102 0.898 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.175 0.825 27 H 0.183 0.817 28 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.001 -12.894 0.116 12.894 hybrid contribution 0.715 1.317 -0.024 1.499 sum 0.717 -11.577 0.092 11.600 Atomic orbital electron populations 1.22154 0.74565 1.05348 1.04079 1.45389 1.09151 1.02243 1.70825 1.22025 0.88001 0.86427 0.73101 1.90290 1.16259 1.87369 1.51305 1.19060 0.96179 0.87482 0.99256 1.21309 0.93577 0.91215 1.52024 0.92611 1.25749 0.97214 1.01269 0.94265 1.70004 1.13799 1.21585 1.50552 0.85511 0.78785 0.77958 0.78839 1.19831 1.19791 1.19822 1.18088 0.83225 0.87460 1.09729 1.20716 1.00589 0.88641 1.16430 1.21034 0.90889 0.99965 1.09546 1.22437 1.01559 0.80951 1.11377 1.42815 1.05805 1.09610 1.59229 0.73929 0.90476 0.87643 0.89751 0.93360 0.93217 0.92204 0.82511 0.81677 0.78920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.19 9.94 127.77 1.27 3.47 15 2 N -0.55 -20.57 3.09 -659.98 -2.04 -22.61 15 3 C 0.51 23.89 7.63 87.66 0.67 24.56 15 4 O -0.57 -29.44 12.98 -3.10 -0.04 -29.48 15 5 C 0.02 0.98 4.01 29.10 0.12 1.10 15 6 C -0.54 -31.48 8.92 25.60 0.23 -31.25 15 7 H 0.06 3.38 6.75 -2.91 -0.02 3.36 15 8 C 0.01 0.81 5.46 84.66 0.46 1.28 15 9 N -0.92 -52.64 13.29 21.45 0.28 -52.36 15 10 Si 0.96 44.60 29.54 68.60 2.03 46.63 15 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 15 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 13 H -0.27 -12.44 7.11 99.48 0.71 -11.74 15 14 C 0.22 7.83 7.43 130.72 0.97 8.80 15 15 C -0.24 -6.80 9.97 22.31 0.22 -6.57 15 16 C -0.19 -4.81 10.85 22.13 0.24 -4.57 15 17 C -0.03 -0.90 11.94 83.12 0.99 0.09 15 18 N -0.57 -19.87 5.73 -191.47 -1.10 -20.96 15 19 H 0.42 15.92 6.43 -92.71 -0.60 15.32 15 20 H 0.08 1.90 8.14 -2.39 -0.02 1.88 15 21 H 0.11 2.22 6.84 -2.39 -0.02 2.20 15 22 H 0.08 2.42 6.45 -2.39 -0.02 2.41 15 23 H 0.05 2.47 8.11 -2.38 -0.02 2.45 15 24 H 0.05 2.53 7.41 -2.39 -0.02 2.51 15 25 H 0.27 14.46 8.31 -92.70 -0.77 13.69 15 26 H 0.16 3.62 7.23 -2.91 -0.02 3.59 15 27 H 0.17 3.04 8.06 -2.91 -0.02 3.02 15 28 H 0.19 3.68 8.06 -2.91 -0.02 3.65 15 Total: -1.00 -67.39 243.89 4.88 -62.50 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.58 Total: 19.37 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 5.17 Total: -3.10 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -2.85 Total: -95.93 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.04 Total: -29.48 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -67.39 4.88 -62.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258712604.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.864 kcal (2) G-P(sol) polarization free energy of solvation -67.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds