Wall clock time and date at job start Mon Mar 30 2020 02:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99939 * 2 1 4 4 C 1.50695 * 109.47176 * 270.00479 * 3 2 1 5 5 C 1.40900 * 126.29168 * 270.29647 * 4 3 2 6 6 C 1.34850 * 107.41621 * 180.12828 * 5 4 3 7 7 N 1.36348 * 108.21820 * 359.62102 * 6 5 4 8 8 H 0.97004 * 125.63569 * 180.26281 * 7 6 5 9 9 C 1.34858 * 126.29153 * 90.00037 * 4 3 2 10 10 C 1.34780 * 119.99831 * 180.02562 * 2 1 3 11 11 O 1.21689 * 119.99580 * 179.97438 * 10 2 1 12 12 C 1.46370 * 120.00224 * 359.97438 * 10 2 1 13 13 H 1.08007 * 119.99893 * 359.97438 * 12 10 2 14 14 C 1.40046 * 120.00117 * 180.02562 * 12 10 2 15 15 N 1.30670 * 119.99914 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00144 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47185 * 59.99495 * 16 14 12 18 18 H 1.48497 * 109.47472 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46984 * 299.99657 * 16 14 12 20 20 H 1.08990 * 109.47628 * 89.99720 * 1 2 3 21 21 H 1.09002 * 109.46925 * 210.00391 * 1 2 3 22 22 H 1.09002 * 109.46865 * 329.99309 * 1 2 3 23 23 H 1.08999 * 109.46890 * 150.00287 * 3 2 1 24 24 H 1.08999 * 109.46875 * 30.00682 * 3 2 1 25 25 H 1.07999 * 126.29093 * 359.97438 * 5 4 3 26 26 H 1.08002 * 125.89234 * 179.89015 * 6 5 4 27 27 H 1.07990 * 125.89063 * 359.97438 * 9 4 3 28 28 H 0.96999 * 120.00088 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 3.5683 1.3720 -2.2091 6 6 3.4055 1.9627 -3.4104 7 7 2.2223 2.6401 -3.3954 8 1 1.8551 3.1526 -4.1327 9 6 1.6402 2.4778 -2.1732 10 6 2.1389 -1.1672 -0.0005 11 8 3.3558 -1.1672 -0.0010 12 6 1.4071 -2.4349 -0.0005 13 1 0.3270 -2.4348 0.0003 14 6 2.1073 -3.6477 -0.0005 15 7 3.4140 -3.6477 -0.0010 16 14 1.1733 -5.2654 0.0002 17 1 0.3190 -5.3444 -1.2118 18 1 2.1382 -6.3942 -0.0005 19 1 0.3201 -5.3439 1.2131 20 1 -0.3634 0.0001 -1.0275 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5140 23 1 3.1499 1.1384 0.5138 24 1 1.6085 2.0283 0.5139 25 1 4.4045 0.7594 -1.9061 26 1 4.0917 1.9053 -4.2424 27 1 0.6946 2.8961 -1.8617 28 1 3.8990 -4.4877 -0.0007 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258786836.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:11 Heat of formation + Delta-G solvation = -10.328531 kcal Electronic energy + Delta-G solvation = -13446.594562 eV Core-core repulsion = 11076.623620 eV Total energy + Delta-G solvation = -2369.970942 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.82280 -39.38781 -35.82319 -34.51858 -32.43273 -30.17350 -28.57900 -27.49337 -25.67984 -21.72706 -21.38209 -20.01903 -18.86595 -18.28567 -17.54246 -16.25234 -15.89413 -15.45698 -14.76124 -14.41190 -14.24169 -14.06073 -13.52086 -13.31973 -13.13350 -13.00895 -12.85010 -12.64359 -12.27102 -12.03582 -11.87091 -10.87310 -9.82870 -9.45544 -9.03110 -8.86364 -8.21017 -6.77370 1.39831 1.44320 1.46493 1.55385 2.03477 2.29551 2.53856 2.64950 3.24318 3.72510 4.23101 4.44039 4.52464 4.58407 4.67214 4.82539 5.00393 5.04303 5.09901 5.36979 5.41566 5.56381 5.85471 6.11594 6.22132 6.30397 6.54455 6.93499 6.97030 7.55358 8.57945 8.76746 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.044371 B = 0.009009 C = 0.008500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.895116 B = 3107.265564 C = 3293.303365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.646 5.646 3 C 0.194 3.806 4 C -0.204 4.204 5 C -0.223 4.223 6 C -0.015 4.015 7 N -0.545 5.545 8 H 0.432 0.568 9 C 0.004 3.996 10 C 0.540 3.460 11 O -0.627 6.627 12 C -0.573 4.573 13 H 0.090 0.910 14 C 0.027 3.973 15 N -0.825 5.825 16 Si 0.995 3.005 17 H -0.256 1.256 18 H -0.276 1.276 19 H -0.252 1.252 20 H 0.036 0.964 21 H 0.060 0.940 22 H 0.083 0.917 23 H 0.033 0.967 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.189 0.811 27 H 0.196 0.804 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.101 10.166 -5.542 14.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.381 5.381 3 C 0.070 3.930 4 C -0.212 4.212 5 C -0.248 4.248 6 C -0.146 4.146 7 N -0.142 5.142 8 H 0.272 0.728 9 C -0.128 4.128 10 C 0.345 3.655 11 O -0.513 6.513 12 C -0.609 4.609 13 H 0.108 0.892 14 C -0.187 4.187 15 N -0.455 5.455 16 Si 0.814 3.186 17 H -0.180 1.180 18 H -0.201 1.201 19 H -0.176 1.176 20 H 0.055 0.945 21 H 0.079 0.921 22 H 0.101 0.899 23 H 0.052 0.948 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.206 0.794 27 H 0.213 0.787 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.360 10.190 -5.654 13.783 hybrid contribution 0.158 -0.744 -0.192 0.785 sum -7.201 9.446 -5.846 13.239 Atomic orbital electron populations 1.21528 0.79657 1.02471 1.00378 1.47912 1.06815 1.04905 1.78505 1.19381 0.96047 0.85554 0.91970 1.20154 0.97579 1.04842 0.98595 1.20918 1.01192 1.06125 0.96605 1.21992 0.91648 1.01428 0.99555 1.41826 1.17237 1.41688 1.13497 0.72780 1.21928 1.00428 1.04906 0.85579 1.18615 0.86709 0.84281 0.75922 1.90528 1.16243 1.87587 1.56973 1.21531 0.94765 0.90100 1.54534 0.89162 1.26998 0.95478 1.04930 0.91314 1.70215 1.09566 1.28652 1.37050 0.85121 0.78239 0.74928 0.80286 1.17973 1.20070 1.17579 0.94545 0.92123 0.89885 0.94809 0.88574 0.89093 0.79432 0.78684 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.76 10.19 127.77 1.30 5.06 15 2 N -0.65 -31.11 2.86 -856.28 -2.45 -33.56 15 3 C 0.19 8.28 5.95 85.63 0.51 8.79 15 4 C -0.20 -8.06 5.72 -19.99 -0.11 -8.18 15 5 C -0.22 -9.52 10.81 22.14 0.24 -9.29 15 6 C -0.02 -0.47 11.94 83.21 0.99 0.53 15 7 N -0.55 -13.34 6.07 -194.56 -1.18 -14.52 15 8 H 0.43 6.41 8.96 -92.71 -0.83 5.58 15 9 C 0.00 0.12 11.85 83.22 0.99 1.10 15 10 C 0.54 33.06 7.61 86.36 0.66 33.72 15 11 O -0.63 -44.09 14.60 -4.31 -0.06 -44.15 15 12 C -0.57 -33.78 8.74 24.83 0.22 -33.56 15 13 H 0.09 4.75 6.00 -2.91 -0.02 4.73 15 14 C 0.03 1.57 5.50 85.30 0.47 2.04 15 15 N -0.82 -52.64 11.83 21.83 0.26 -52.38 15 16 Si 0.99 42.37 29.56 68.60 2.03 44.40 15 17 H -0.26 -10.25 7.11 99.48 0.71 -9.54 15 18 H -0.28 -11.37 7.11 99.48 0.71 -10.66 15 19 H -0.25 -9.98 7.11 99.48 0.71 -9.28 15 20 H 0.04 1.26 8.14 -2.39 -0.02 1.24 15 21 H 0.06 2.31 6.09 -2.39 -0.01 2.30 15 22 H 0.08 2.29 7.89 -2.39 -0.02 2.27 15 23 H 0.03 1.68 7.42 -2.39 -0.02 1.67 15 24 H 0.10 3.17 7.89 -2.39 -0.02 3.15 15 25 H 0.09 4.61 8.06 -2.91 -0.02 4.58 15 26 H 0.19 4.45 8.06 -2.91 -0.02 4.43 15 27 H 0.20 3.94 8.06 -2.92 -0.02 3.91 15 28 H 0.27 15.75 8.29 -92.71 -0.77 14.98 15 Total: -1.00 -84.83 249.41 4.20 -80.63 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.34 Total: 19.36 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 5.26 Total: 0.22 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -3.37 Total: -100.46 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.06 Total: -44.15 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -84.83 4.20 -80.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258786836.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.302 kcal (2) G-P(sol) polarization free energy of solvation -84.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds