Wall clock time and date at job start Mon Mar 30 2020 02:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46490 * 125.38149 * 2 1 4 4 C 1.53552 * 105.05434 * 180.02562 * 3 2 1 5 5 N 1.47555 * 104.98175 * 0.02562 * 4 3 2 6 6 C 1.35465 * 138.93668 * 179.97438 * 5 4 3 7 7 O 1.21279 * 127.00751 * 0.05551 * 6 5 4 8 8 C 1.51255 * 105.99071 * 180.02562 * 6 5 4 9 9 H 1.09002 * 110.56776 * 241.43237 * 8 6 5 10 10 C 1.50703 * 110.68903 * 118.63487 * 8 6 5 11 11 H 1.08004 * 120.00182 * 2.13121 * 10 8 6 12 12 C 1.37879 * 120.00045 * 182.13125 * 10 8 6 13 13 N 1.31519 * 119.99877 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 120.00004 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.46909 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46640 * 119.99940 * 14 12 10 17 17 H 1.48495 * 109.46917 * 239.99941 * 14 12 10 18 18 C 1.51109 * 103.77193 * 0.02562 * 8 6 5 19 19 C 1.34128 * 106.82727 * 0.02562 * 18 8 6 20 20 H 1.08993 * 109.47026 * 269.99057 * 1 2 3 21 21 H 1.09001 * 109.47464 * 29.99979 * 1 2 3 22 22 H 1.09008 * 109.47022 * 149.99449 * 1 2 3 23 23 H 1.09005 * 110.33074 * 298.90246 * 3 2 1 24 24 H 1.09002 * 110.32090 * 61.00568 * 3 2 1 25 25 H 1.08998 * 110.33788 * 118.87623 * 4 3 2 26 26 H 1.08995 * 110.33624 * 241.02585 * 4 3 2 27 27 H 0.96994 * 119.99839 * 180.02562 * 13 12 10 28 28 H 1.08004 * 126.59213 * 180.02562 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3132 1.1944 0.0000 4 6 3.7531 0.6609 -0.0007 5 7 3.6156 -0.8082 -0.0016 6 6 4.4065 -1.9080 -0.0029 7 8 5.6189 -1.9353 -0.0028 8 6 3.4692 -3.0952 -0.0038 9 1 3.6152 -3.6990 0.8918 10 6 3.6692 -3.9305 -1.2421 11 1 4.4308 -3.6603 -1.9587 12 6 2.8799 -5.0398 -1.4603 13 7 1.9528 -5.3692 -0.5875 14 14 3.1283 -6.0756 -2.9949 15 1 4.2266 -5.4973 -3.8100 16 1 3.4801 -7.4641 -2.6031 17 1 1.8752 -6.0885 -3.7915 18 6 2.0944 -2.4681 -0.0035 19 6 2.2739 -1.1389 -0.0031 20 1 -0.3633 -0.0002 1.0276 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5140 23 1 2.1297 1.7892 -0.8948 24 1 2.1284 1.7899 0.8941 25 1 4.2794 0.9924 -0.8957 26 1 4.2806 0.9934 0.8933 27 1 1.3978 -6.1497 -0.7408 28 1 1.1487 -2.9899 -0.0035 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259579792.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:47 Heat of formation + Delta-G solvation = 2.840202 kcal Electronic energy + Delta-G solvation = -13680.950017 eV Core-core repulsion = 11311.550115 eV Total energy + Delta-G solvation = -2369.399903 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.27114 -39.00482 -36.45276 -34.86262 -33.44859 -30.07141 -28.67631 -26.49689 -25.93982 -23.06148 -21.48398 -20.13039 -18.65452 -17.60250 -17.29344 -16.80295 -16.11792 -15.61558 -15.45754 -14.68566 -14.50809 -14.06439 -14.00267 -13.42607 -13.05375 -12.92143 -12.83907 -12.76396 -12.58379 -12.34106 -12.15988 -11.46303 -10.73573 -10.58563 -9.60504 -8.22681 -7.82022 -6.30528 1.14141 1.42164 1.44732 1.56189 1.63173 2.15760 2.43615 2.63115 3.14515 3.46794 3.89467 4.03500 4.21872 4.47846 4.58574 4.71653 4.77182 4.92882 4.95514 4.97522 5.18601 5.37846 5.65008 5.75953 5.97444 6.09548 6.46673 6.70687 6.84611 7.14577 7.35686 8.91454 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.036885 B = 0.011172 C = 0.009408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.931450 B = 2505.559477 C = 2975.623523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.129 3.871 2 N -0.648 5.648 3 C 0.123 3.877 4 C 0.089 3.911 5 N -0.589 5.589 6 C 0.539 3.461 7 O -0.564 6.564 8 C 0.063 3.937 9 H 0.045 0.955 10 C -0.526 4.526 11 H 0.043 0.957 12 C 0.029 3.971 13 N -0.901 5.901 14 Si 0.965 3.035 15 H -0.276 1.276 16 H -0.273 1.273 17 H -0.269 1.269 18 C -0.249 4.249 19 C 0.291 3.709 20 H 0.055 0.945 21 H 0.097 0.903 22 H 0.054 0.946 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.268 0.732 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 13.009 0.584 14.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.370 5.370 3 C 0.001 3.999 4 C -0.031 4.031 5 N -0.317 5.317 6 C 0.333 3.667 7 O -0.443 6.443 8 C 0.041 3.959 9 H 0.062 0.938 10 C -0.564 4.564 11 H 0.061 0.939 12 C -0.172 4.172 13 N -0.539 5.539 14 Si 0.790 3.210 15 H -0.201 1.201 16 H -0.198 1.198 17 H -0.195 1.195 18 C -0.281 4.281 19 C 0.099 3.901 20 H 0.073 0.927 21 H 0.116 0.884 22 H 0.072 0.928 23 H 0.114 0.886 24 H 0.118 0.882 25 H 0.106 0.894 26 H 0.113 0.887 27 H 0.077 0.923 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.163 13.115 0.634 14.109 hybrid contribution 0.259 -0.807 -0.613 1.046 sum -4.903 12.308 0.022 13.248 Atomic orbital electron populations 1.21433 0.74752 1.03306 1.01752 1.46385 1.04990 1.01259 1.84319 1.22177 0.85597 0.87780 1.04345 1.22691 0.99506 0.76817 1.04113 1.47260 1.07474 1.07291 1.69654 1.21726 0.87157 0.85242 0.72610 1.90526 1.14125 1.86669 1.53026 1.18189 0.88996 0.90467 0.98240 0.93771 1.20759 1.19011 1.10955 1.05662 0.93880 1.25645 0.94184 0.97648 0.99744 1.70071 1.20817 1.26743 1.36220 0.85406 0.78238 0.78367 0.79031 1.20067 1.19803 1.19455 1.22293 0.99048 0.88656 1.18081 1.18424 0.80851 0.89324 1.01470 0.92689 0.88417 0.92763 0.88645 0.88176 0.89410 0.88692 0.92308 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.88 11.22 127.77 1.43 4.32 15 2 N -0.65 -19.45 3.49 -726.44 -2.54 -21.98 15 3 C 0.12 2.68 7.57 86.57 0.66 3.34 15 4 C 0.09 2.55 7.98 86.36 0.69 3.24 15 5 N -0.59 -25.15 3.45 -631.17 -2.18 -27.32 15 6 C 0.54 28.37 8.10 87.72 0.71 29.08 15 7 O -0.56 -32.16 18.03 -3.03 -0.05 -32.22 15 8 C 0.06 3.51 2.90 -12.73 -0.04 3.47 15 9 H 0.04 2.68 8.14 -2.39 -0.02 2.66 15 10 C -0.53 -31.37 8.59 25.60 0.22 -31.15 15 11 H 0.04 2.65 7.77 -2.91 -0.02 2.63 15 12 C 0.03 1.64 5.34 84.65 0.45 2.10 15 13 N -0.90 -51.66 12.30 21.45 0.26 -51.39 15 14 Si 0.97 44.51 29.54 68.60 2.03 46.54 15 15 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 18 C -0.25 -12.43 9.81 24.88 0.24 -12.18 15 19 C 0.29 12.17 7.58 129.86 0.98 13.16 15 20 H 0.05 1.10 8.14 -2.39 -0.02 1.08 15 21 H 0.10 1.47 8.14 -2.39 -0.02 1.45 15 22 H 0.05 1.39 8.14 -2.38 -0.02 1.37 15 23 H 0.10 1.58 8.14 -2.38 -0.02 1.56 15 24 H 0.10 1.58 8.14 -2.39 -0.02 1.56 15 25 H 0.09 2.32 8.14 -2.39 -0.02 2.30 15 26 H 0.09 2.38 8.14 -2.39 -0.02 2.36 15 27 H 0.27 14.28 8.31 -92.71 -0.77 13.51 15 28 H 0.13 6.62 7.62 -2.91 -0.02 6.59 15 Total: -1.00 -72.52 246.06 4.02 -68.50 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 1.15 Total: 2.52 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 5.35 Total: 15.36 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -4.45 Total: -100.70 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.05 Total: -32.22 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -72.52 4.02 -68.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259579792.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.337 kcal (2) G-P(sol) polarization free energy of solvation -72.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds