Wall clock time and date at job start Mon Mar 30 2020 02:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46489 * 125.38350 * 2 1 4 4 C 1.53543 * 105.04969 * 180.02562 * 3 2 1 5 5 N 1.47543 * 104.99022 * 0.02562 * 4 3 2 6 6 C 1.35800 * 138.90494 * 179.88470 * 5 4 3 7 7 O 1.21283 * 127.17269 * 0.06179 * 6 5 4 8 8 C 1.51251 * 105.82263 * 179.97438 * 6 5 4 9 9 H 1.09005 * 110.57062 * 118.76675 * 8 6 5 10 10 C 1.50706 * 110.56595 * 241.46957 * 8 6 5 11 11 H 1.07997 * 119.99562 * 357.96104 * 10 8 6 12 12 C 1.37877 * 120.00159 * 177.95646 * 10 8 6 13 13 N 1.31510 * 119.99756 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00022 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46864 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47213 * 119.99855 * 14 12 10 17 17 H 1.48493 * 109.46786 * 240.00161 * 14 12 10 18 18 C 1.51106 * 103.90361 * 0.11547 * 8 6 5 19 19 C 1.34122 * 106.82747 * 359.93009 * 18 8 6 20 20 H 1.08999 * 109.46810 * 269.99825 * 1 2 3 21 21 H 1.08999 * 109.47026 * 29.99129 * 1 2 3 22 22 H 1.08997 * 109.47068 * 149.99647 * 1 2 3 23 23 H 1.09001 * 110.32888 * 298.89769 * 3 2 1 24 24 H 1.09009 * 110.32359 * 61.11093 * 3 2 1 25 25 H 1.09003 * 110.33636 * 118.88056 * 4 3 2 26 26 H 1.08998 * 110.34331 * 241.01471 * 4 3 2 27 27 H 0.96998 * 119.99911 * 180.02562 * 13 12 10 28 28 H 1.08004 * 126.58726 * 179.89026 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3133 1.1943 0.0000 4 6 3.7530 0.6608 -0.0007 5 7 3.6156 -0.8082 -0.0016 6 6 4.4091 -1.9103 -0.0043 7 8 5.6215 -1.9404 -0.0060 8 6 3.4691 -3.0953 -0.0026 9 1 3.6135 -3.7000 -0.8980 10 6 3.6712 -3.9296 1.2360 11 1 4.4340 -3.6587 1.9509 12 6 2.8823 -5.0386 1.4565 13 7 1.9537 -5.3687 0.5857 14 14 3.1324 -6.0724 2.9922 15 1 4.2324 -5.4935 3.8048 16 1 1.8801 -6.0842 3.7903 17 1 3.4839 -7.4613 2.6020 18 6 2.0943 -2.4681 -0.0017 19 6 2.2739 -1.1390 -0.0011 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8901 -0.5137 22 1 -0.3633 -0.8899 -0.5139 23 1 2.1299 1.7891 -0.8948 24 1 2.1299 1.7890 0.8950 25 1 4.2795 0.9923 -0.8957 26 1 4.2808 0.9933 0.8932 27 1 1.3984 -6.1487 0.7410 28 1 1.1487 -2.9899 -0.0021 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259579796.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:49 Heat of formation + Delta-G solvation = 2.651561 kcal Electronic energy + Delta-G solvation = -13679.859721 eV Core-core repulsion = 11310.451638 eV Total energy + Delta-G solvation = -2369.408083 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.24457 -39.00784 -36.45158 -34.85557 -33.44660 -30.06565 -28.67111 -26.49676 -25.93482 -23.05736 -21.47618 -20.13066 -18.65123 -17.60658 -17.28809 -16.80054 -16.11712 -15.60946 -15.45891 -14.68919 -14.50571 -14.06610 -14.00856 -13.41131 -13.05748 -12.91209 -12.86347 -12.75665 -12.56881 -12.34797 -12.16716 -11.45866 -10.73709 -10.58590 -9.60017 -8.22765 -7.81739 -6.30566 1.13864 1.42062 1.44649 1.56002 1.62757 2.15592 2.43591 2.63124 3.14539 3.47055 3.89814 4.03578 4.22083 4.47966 4.58660 4.71339 4.77149 4.92602 4.96444 4.97195 5.18534 5.38158 5.64940 5.76106 5.97076 6.09246 6.47055 6.70629 6.84621 7.14368 7.35649 8.91391 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.036834 B = 0.011179 C = 0.009412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.986603 B = 2504.143420 C = 2974.110554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.129 3.871 2 N -0.648 5.648 3 C 0.123 3.877 4 C 0.089 3.911 5 N -0.590 5.590 6 C 0.540 3.460 7 O -0.563 6.563 8 C 0.063 3.937 9 H 0.045 0.955 10 C -0.526 4.526 11 H 0.043 0.957 12 C 0.029 3.971 13 N -0.901 5.901 14 Si 0.965 3.035 15 H -0.276 1.276 16 H -0.269 1.269 17 H -0.273 1.273 18 C -0.250 4.250 19 C 0.292 3.708 20 H 0.047 0.953 21 H 0.101 0.899 22 H 0.058 0.942 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.268 0.732 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.722 12.995 -0.860 14.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.370 5.370 3 C 0.001 3.999 4 C -0.031 4.031 5 N -0.318 5.318 6 C 0.333 3.667 7 O -0.442 6.442 8 C 0.041 3.959 9 H 0.062 0.938 10 C -0.564 4.564 11 H 0.061 0.939 12 C -0.172 4.172 13 N -0.538 5.538 14 Si 0.789 3.211 15 H -0.201 1.201 16 H -0.195 1.195 17 H -0.198 1.198 18 C -0.281 4.281 19 C 0.100 3.900 20 H 0.066 0.934 21 H 0.119 0.881 22 H 0.076 0.924 23 H 0.120 0.880 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.148 13.098 -0.909 14.103 hybrid contribution 0.261 -0.803 0.657 1.069 sum -4.887 12.296 -0.252 13.234 Atomic orbital electron populations 1.21433 0.74755 1.03540 1.01512 1.46388 1.04989 1.01264 1.84316 1.22178 0.85608 0.87790 1.04321 1.22686 0.99502 0.76867 1.04087 1.47349 1.07445 1.07255 1.69791 1.21803 0.87155 0.85171 0.72521 1.90527 1.14117 1.86596 1.52949 1.18187 0.88991 0.90474 0.98234 0.93761 1.20760 1.18954 1.10976 1.05727 0.93896 1.25639 0.94190 0.97637 0.99743 1.70066 1.20736 1.26756 1.36263 0.85409 0.78232 0.78373 0.79045 1.20078 1.19460 1.19792 1.22281 0.99024 0.88650 1.18166 1.18417 0.80849 0.89320 1.01419 0.93417 0.88108 0.92359 0.88010 0.88817 0.88686 0.89471 0.92306 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.89 11.22 127.77 1.43 4.32 15 2 N -0.65 -19.46 3.49 -726.45 -2.54 -22.00 15 3 C 0.12 2.68 7.57 86.56 0.66 3.34 15 4 C 0.09 2.55 7.98 86.36 0.69 3.24 15 5 N -0.59 -25.20 3.46 -630.72 -2.18 -27.39 15 6 C 0.54 28.40 8.11 87.67 0.71 29.11 15 7 O -0.56 -32.06 18.03 -3.04 -0.05 -32.11 15 8 C 0.06 3.51 2.90 -12.73 -0.04 3.47 15 9 H 0.04 2.69 8.14 -2.38 -0.02 2.67 15 10 C -0.53 -31.41 8.59 25.60 0.22 -31.19 15 11 H 0.04 2.65 7.77 -2.91 -0.02 2.62 15 12 C 0.03 1.65 5.34 84.66 0.45 2.11 15 13 N -0.90 -51.65 12.30 21.45 0.26 -51.38 15 14 Si 0.97 44.56 29.54 68.60 2.03 46.59 15 15 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 18 C -0.25 -12.44 9.81 24.88 0.24 -12.20 15 19 C 0.29 12.20 7.58 129.86 0.98 13.18 15 20 H 0.05 1.03 8.14 -2.39 -0.02 1.01 15 21 H 0.10 1.46 8.14 -2.39 -0.02 1.44 15 22 H 0.06 1.44 8.14 -2.39 -0.02 1.42 15 23 H 0.10 1.57 8.14 -2.39 -0.02 1.55 15 24 H 0.09 1.59 8.14 -2.38 -0.02 1.57 15 25 H 0.09 2.37 8.14 -2.39 -0.02 2.35 15 26 H 0.09 2.32 8.14 -2.39 -0.02 2.30 15 27 H 0.27 14.28 8.31 -92.71 -0.77 13.51 15 28 H 0.13 6.61 7.62 -2.91 -0.02 6.59 15 Total: -1.00 -72.52 246.08 4.02 -68.50 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: 1.15 Total: 2.41 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 5.35 Total: 15.38 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -4.46 Total: -100.77 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.05 Total: -32.11 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -72.52 4.02 -68.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259579796.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.154 kcal (2) G-P(sol) polarization free energy of solvation -72.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds