Wall clock time and date at job start Mon Mar 30 2020 02:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46951 * 110.99650 * 2 1 4 4 C 1.53474 * 109.70008 * 52.74701 * 3 2 1 5 5 C 1.51085 * 107.88906 * 49.44090 * 4 3 2 6 6 N 1.32806 * 128.36544 * 164.02291 * 5 4 3 7 7 N 1.29053 * 109.91153 * 180.16634 * 6 5 4 8 8 N 1.40623 * 108.11194 * 359.96123 * 7 6 5 9 9 C 1.37570 * 126.98192 * 179.89239 * 8 7 6 10 10 H 1.08000 * 119.99899 * 174.21106 * 9 8 7 11 11 C 1.39013 * 120.00010 * 354.20619 * 9 8 7 12 12 N 1.31258 * 120.00166 * 5.90369 * 11 9 8 13 13 Si 1.86803 * 119.99760 * 185.90873 * 11 9 8 14 14 H 1.48503 * 109.47051 * 94.97876 * 13 11 9 15 15 H 1.48508 * 109.46716 * 214.97589 * 13 11 9 16 16 H 1.48497 * 109.47070 * 334.97556 * 13 11 9 17 17 C 1.35606 * 122.76712 * 344.05046 * 5 4 3 18 18 C 1.47324 * 111.00111 * 124.41476 * 2 1 3 19 19 H 1.08998 * 109.47205 * 56.05115 * 1 2 3 20 20 H 1.09001 * 109.46959 * 176.04552 * 1 2 3 21 21 H 1.08999 * 109.47434 * 296.04131 * 1 2 3 22 22 H 1.09004 * 109.43001 * 172.81114 * 3 2 1 23 23 H 1.08993 * 109.43520 * 292.72170 * 3 2 1 24 24 H 1.08998 * 109.77859 * 169.04276 * 4 3 2 25 25 H 1.09005 * 109.77172 * 289.84538 * 4 3 2 26 26 H 0.96993 * 119.99672 * 180.02562 * 12 11 9 27 27 H 1.09005 * 109.70322 * 46.49156 * 18 2 1 28 28 H 1.08993 * 109.70647 * 167.10825 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 1.3644 2.1683 1.1501 5 6 1.4918 1.3442 2.4100 6 7 1.3548 1.7391 3.6706 7 7 1.5425 0.7408 4.4667 8 7 1.8221 -0.3947 3.6856 9 6 2.0854 -1.6666 4.1389 10 1 2.1942 -2.4788 3.4355 11 6 2.2114 -1.9063 5.5024 12 7 1.9655 -0.9463 6.3631 13 14 2.7308 -3.5948 6.1097 14 1 4.1992 -3.6112 6.3307 15 1 2.0347 -3.8975 7.3861 16 1 2.3714 -4.6179 5.0951 17 6 1.7803 0.0193 2.3943 18 6 1.9970 -0.7773 1.1346 19 1 -0.3633 0.5739 -0.8525 20 1 -0.3633 -1.0252 -0.0709 21 1 -0.3634 0.4512 0.9233 22 1 3.0777 1.3450 0.1286 23 1 1.7549 1.8528 -0.9481 24 1 1.8891 3.1156 1.2743 25 1 0.3119 2.3542 0.9358 26 1 2.0537 -1.1136 7.3144 27 1 1.4692 -1.7284 1.2059 28 1 3.0625 -0.9575 0.9926 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259583205.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:40 Heat of formation + Delta-G solvation = 94.417247 kcal Electronic energy + Delta-G solvation = -13872.301121 eV Core-core repulsion = 11539.165048 eV Total energy + Delta-G solvation = -2333.136073 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.55792 -37.40746 -34.23138 -31.89582 -30.40183 -28.92578 -26.64813 -25.63651 -23.27994 -21.38778 -21.05603 -18.26279 -17.59302 -15.63641 -15.00379 -14.88623 -14.55935 -14.13030 -13.50737 -12.95792 -12.65229 -12.15320 -12.05282 -11.63362 -11.45168 -11.28865 -11.25755 -10.97638 -10.72585 -10.54212 -9.90245 -9.56592 -9.20736 -8.67932 -7.97793 -7.19787 -6.86767 -4.66926 2.78396 2.93066 2.99725 3.26983 3.65417 4.07946 4.42668 4.55076 4.76096 5.40828 5.55416 5.66889 5.79450 5.91586 6.01988 6.11111 6.22594 6.25912 6.31924 6.35879 6.50431 6.75867 6.91388 7.07658 7.42932 7.47855 7.80683 7.87628 8.48526 9.10441 10.10311 10.19459 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.048342 B = 0.010692 C = 0.009278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.065782 B = 2618.056771 C = 3017.302654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.529 5.529 3 C 0.058 3.942 4 C -0.053 4.053 5 C -0.072 4.072 6 N -0.325 5.325 7 N -0.104 5.104 8 N -0.132 5.132 9 C -0.312 4.312 10 H 0.121 0.879 11 C 0.047 3.953 12 N -0.757 5.757 13 Si 0.942 3.058 14 H -0.267 1.267 15 H -0.273 1.273 16 H -0.260 1.260 17 C -0.129 4.129 18 C 0.149 3.851 19 H 0.061 0.939 20 H 0.061 0.939 21 H 0.039 0.961 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.283 0.717 27 H 0.074 0.926 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 -2.471 -8.379 8.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.251 5.251 3 C -0.071 4.071 4 C -0.094 4.094 5 C -0.222 4.222 6 N -0.182 5.182 7 N -0.079 5.079 8 N 0.098 4.902 9 C -0.449 4.449 10 H 0.139 0.861 11 C -0.173 4.173 12 N -0.383 5.383 13 Si 0.765 3.235 14 H -0.192 1.192 15 H -0.197 1.197 16 H -0.183 1.183 17 C -0.267 4.267 18 C 0.019 3.981 19 H 0.080 0.920 20 H 0.080 0.920 21 H 0.058 0.942 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.153 -1.981 -7.066 7.341 hybrid contribution 0.075 -0.845 0.307 0.903 sum 0.229 -2.827 -6.760 7.330 Atomic orbital electron populations 1.22370 0.87985 1.01615 1.00846 1.62634 1.08145 1.13594 1.40730 1.22199 0.99826 0.87973 0.97106 1.20387 1.00490 0.97654 0.90891 1.20603 1.16029 0.92187 0.93356 1.73749 1.18418 1.25054 1.00956 1.82754 1.28086 0.85514 1.11592 1.46298 1.31717 1.08999 1.03159 1.20165 1.48976 0.82587 0.93141 0.86132 1.25815 0.95191 1.00634 0.95633 1.70159 1.32343 1.32315 1.03449 0.85679 0.79312 0.79461 0.79060 1.19208 1.19736 1.18335 1.21641 1.20252 0.96704 0.88114 1.20353 0.99968 0.94692 0.83101 0.91990 0.92014 0.94192 0.90842 0.90717 0.91361 0.91994 0.90635 0.90758 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.75 60.07 0.53 0.85 15 2 N -0.53 -8.91 5.21 -243.70 -1.27 -10.18 15 3 C 0.06 0.92 5.95 -3.55 -0.02 0.90 15 4 C -0.05 -1.00 5.72 -27.45 -0.16 -1.15 15 5 C -0.07 -1.76 6.39 -82.92 -0.53 -2.29 15 6 N -0.32 -9.25 12.31 33.27 0.41 -8.84 15 7 N -0.10 -3.16 11.78 60.35 0.71 -2.45 15 8 N -0.13 -3.66 3.76 -7.86 -0.03 -3.69 15 9 C -0.31 -8.09 10.14 -14.69 -0.15 -8.24 15 10 H 0.12 2.78 7.79 -52.49 -0.41 2.37 15 11 C 0.05 1.19 5.50 -17.51 -0.10 1.09 15 12 N -0.76 -20.67 11.92 55.50 0.66 -20.00 15 13 Si 0.94 18.13 29.56 -169.99 -5.02 13.11 15 14 H -0.27 -5.08 7.11 56.52 0.40 -4.67 15 15 H -0.27 -5.18 7.11 56.52 0.40 -4.77 15 16 H -0.26 -4.74 7.11 56.52 0.40 -4.34 15 17 C -0.13 -3.14 6.31 -81.88 -0.52 -3.66 15 18 C 0.15 2.87 5.91 -4.79 -0.03 2.85 15 19 H 0.06 0.82 8.14 -51.93 -0.42 0.39 15 20 H 0.06 0.91 8.10 -51.93 -0.42 0.48 15 21 H 0.04 0.74 5.80 -51.93 -0.30 0.44 15 22 H 0.07 1.17 8.07 -51.93 -0.42 0.75 15 23 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.07 1.21 8.14 -51.93 -0.42 0.78 15 25 H 0.06 1.10 7.09 -51.93 -0.37 0.73 15 26 H 0.28 6.96 8.30 -40.82 -0.34 6.62 15 27 H 0.07 1.38 8.01 -51.93 -0.42 0.96 15 28 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 LS Contribution 236.24 15.07 3.56 3.56 Total: -1.00 -31.75 236.24 -5.11 -36.86 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -3.16 Total: 1.29 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -0.97 Total: -9.65 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.48 Total: -45.17 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.11 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.75 -5.11 -36.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259583205.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.279 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds