Wall clock time and date at job start Mon Mar 30 2020 02:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46951 * 110.99650 * 2 1 4 4 C 1.53474 * 109.70008 * 52.74701 * 3 2 1 5 5 C 1.51085 * 107.88906 * 49.44090 * 4 3 2 6 6 N 1.32806 * 128.36544 * 164.02291 * 5 4 3 7 7 N 1.29053 * 109.91153 * 180.16634 * 6 5 4 8 8 N 1.40623 * 108.11194 * 359.96123 * 7 6 5 9 9 C 1.37570 * 126.98192 * 179.89239 * 8 7 6 10 10 H 1.08000 * 119.99899 * 174.21106 * 9 8 7 11 11 C 1.39013 * 120.00010 * 354.20619 * 9 8 7 12 12 N 1.31258 * 120.00166 * 5.90369 * 11 9 8 13 13 Si 1.86803 * 119.99760 * 185.90873 * 11 9 8 14 14 H 1.48503 * 109.47051 * 94.97876 * 13 11 9 15 15 H 1.48508 * 109.46716 * 214.97589 * 13 11 9 16 16 H 1.48497 * 109.47070 * 334.97556 * 13 11 9 17 17 C 1.35606 * 122.76712 * 344.05046 * 5 4 3 18 18 C 1.47324 * 111.00111 * 124.41476 * 2 1 3 19 19 H 1.08998 * 109.47205 * 56.05115 * 1 2 3 20 20 H 1.09001 * 109.46959 * 176.04552 * 1 2 3 21 21 H 1.08999 * 109.47434 * 296.04131 * 1 2 3 22 22 H 1.09004 * 109.43001 * 172.81114 * 3 2 1 23 23 H 1.08993 * 109.43520 * 292.72170 * 3 2 1 24 24 H 1.08998 * 109.77859 * 169.04276 * 4 3 2 25 25 H 1.09005 * 109.77172 * 289.84538 * 4 3 2 26 26 H 0.96993 * 119.99672 * 180.02562 * 12 11 9 27 27 H 1.09005 * 109.70322 * 46.49156 * 18 2 1 28 28 H 1.08993 * 109.70647 * 167.10825 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 1.3644 2.1683 1.1501 5 6 1.4918 1.3442 2.4100 6 7 1.3548 1.7391 3.6706 7 7 1.5425 0.7408 4.4667 8 7 1.8221 -0.3947 3.6856 9 6 2.0854 -1.6666 4.1389 10 1 2.1942 -2.4788 3.4355 11 6 2.2114 -1.9063 5.5024 12 7 1.9655 -0.9463 6.3631 13 14 2.7308 -3.5948 6.1097 14 1 4.1992 -3.6112 6.3307 15 1 2.0347 -3.8975 7.3861 16 1 2.3714 -4.6179 5.0951 17 6 1.7803 0.0193 2.3943 18 6 1.9970 -0.7773 1.1346 19 1 -0.3633 0.5739 -0.8525 20 1 -0.3633 -1.0252 -0.0709 21 1 -0.3634 0.4512 0.9233 22 1 3.0777 1.3450 0.1286 23 1 1.7549 1.8528 -0.9481 24 1 1.8891 3.1156 1.2743 25 1 0.3119 2.3542 0.9358 26 1 2.0537 -1.1136 7.3144 27 1 1.4692 -1.7284 1.2059 28 1 3.0625 -0.9575 0.9926 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259583205.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:40 Heat of formation + Delta-G solvation = 69.857697 kcal Electronic energy + Delta-G solvation = -13873.366103 eV Core-core repulsion = 11539.165048 eV Total energy + Delta-G solvation = -2334.201055 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.44639 -38.91520 -36.16097 -33.78558 -32.02040 -30.61566 -28.09237 -27.56560 -24.91013 -23.06922 -22.88634 -19.96971 -19.44991 -17.52947 -16.56932 -16.40094 -16.17116 -15.65946 -15.17421 -14.62485 -14.27490 -13.80284 -13.63702 -13.31701 -12.97401 -12.88369 -12.69351 -12.39071 -12.13973 -12.02855 -11.68098 -11.43303 -11.16959 -10.64197 -9.40531 -9.13516 -8.75117 -6.69070 1.03451 1.34845 1.56054 1.60550 2.02865 2.11572 2.67956 2.86528 3.08681 3.95226 4.12977 4.23482 4.29671 4.43773 4.58278 4.68911 4.73598 4.81057 4.88566 4.99507 5.05543 5.09093 5.19148 5.32185 5.89547 5.95422 6.05358 6.12296 6.56400 7.16200 8.16382 8.26431 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.048342 B = 0.010692 C = 0.009278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.065782 B = 2618.056771 C = 3017.302654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.518 5.518 3 C 0.062 3.938 4 C -0.052 4.052 5 C -0.076 4.076 6 N -0.365 5.365 7 N -0.169 5.169 8 N -0.148 5.148 9 C -0.338 4.338 10 H 0.147 0.853 11 C -0.002 4.002 12 N -0.809 5.809 13 Si 1.029 2.971 14 H -0.261 1.261 15 H -0.270 1.270 16 H -0.237 1.237 17 C -0.137 4.137 18 C 0.153 3.847 19 H 0.094 0.906 20 H 0.071 0.929 21 H 0.006 0.994 22 H 0.074 0.926 23 H 0.117 0.883 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.288 0.712 27 H 0.082 0.918 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 -4.095 -10.636 11.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.239 5.239 3 C -0.067 4.067 4 C -0.093 4.093 5 C -0.227 4.227 6 N -0.221 5.221 7 N -0.144 5.144 8 N 0.081 4.919 9 C -0.475 4.475 10 H 0.164 0.836 11 C -0.217 4.217 12 N -0.436 5.436 13 Si 0.845 3.155 14 H -0.186 1.186 15 H -0.195 1.195 16 H -0.159 1.159 17 C -0.275 4.275 18 C 0.022 3.978 19 H 0.113 0.887 20 H 0.089 0.911 21 H 0.025 0.975 22 H 0.092 0.908 23 H 0.135 0.865 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.574 -3.567 -9.350 10.024 hybrid contribution -0.093 -0.288 0.920 0.969 sum 0.481 -3.855 -8.430 9.282 Atomic orbital electron populations 1.22438 0.87135 1.02605 1.00491 1.62722 1.08762 1.13926 1.38489 1.22334 0.99613 0.87125 0.97606 1.20614 1.01744 0.97712 0.89219 1.21649 1.13670 0.93393 0.93950 1.73699 1.20165 1.25443 1.02785 1.82675 1.31528 0.86892 1.13265 1.46660 1.31716 1.09207 1.04333 1.20998 1.49149 0.82778 0.94566 0.83572 1.27184 0.93972 1.05283 0.95241 1.70322 1.33710 1.35413 1.04132 0.84453 0.78791 0.73584 0.78667 1.18575 1.19515 1.15931 1.22642 1.18758 0.97472 0.88624 1.20526 1.01046 0.94721 0.81460 0.88723 0.91061 0.97537 0.90785 0.86488 0.90513 0.90880 0.90185 0.89983 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 8.75 127.69 1.12 1.73 15 2 N -0.52 -15.70 5.21 -924.93 -4.82 -20.51 15 3 C 0.06 1.74 5.95 86.45 0.51 2.25 15 4 C -0.05 -1.86 5.72 30.13 0.17 -1.69 15 5 C -0.08 -3.73 6.39 41.92 0.27 -3.46 15 6 N -0.37 -21.62 12.31 -48.64 -0.60 -22.22 15 7 N -0.17 -10.75 11.78 37.02 0.44 -10.32 15 8 N -0.15 -8.44 3.76 -178.80 -0.67 -9.12 15 9 C -0.34 -17.65 10.14 83.98 0.85 -16.80 15 10 H 0.15 6.55 7.79 -2.91 -0.02 6.53 15 11 C 0.00 -0.09 5.50 84.96 0.47 0.38 15 12 N -0.81 -45.69 11.92 21.66 0.26 -45.43 15 13 Si 1.03 36.43 29.56 68.60 2.03 38.46 15 14 H -0.26 -8.95 7.11 99.48 0.71 -8.24 15 15 H -0.27 -9.39 7.11 99.48 0.71 -8.69 15 16 H -0.24 -7.45 7.11 99.48 0.71 -6.75 15 17 C -0.14 -6.66 6.31 41.33 0.26 -6.40 15 18 C 0.15 5.59 5.91 85.45 0.50 6.09 15 19 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 20 H 0.07 1.88 8.10 -2.39 -0.02 1.86 15 21 H 0.01 0.21 5.80 -2.39 -0.01 0.20 15 22 H 0.07 2.11 8.07 -2.39 -0.02 2.09 15 23 H 0.12 2.41 8.14 -2.39 -0.02 2.39 15 24 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 25 H 0.07 2.45 7.09 -2.38 -0.02 2.43 15 26 H 0.29 14.68 8.30 -92.71 -0.77 13.91 15 27 H 0.08 2.86 8.01 -2.38 -0.02 2.84 15 28 H 0.09 3.07 8.14 -2.39 -0.02 3.05 15 Total: -1.00 -72.71 236.24 1.95 -70.76 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 1.16 Total: 16.26 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 4.16 Total: -17.88 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -5.39 Total: -107.60 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.46 kcal Total: -72.71 1.95 -70.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259583205.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.620 kcal (2) G-P(sol) polarization free energy of solvation -72.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds