Wall clock time and date at job start Mon Mar 30 2020 02:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.39998 * 126.03211 * 2 1 4 4 C 1.31056 * 108.39145 * 180.02562 * 3 2 1 5 5 C 1.39801 * 108.18443 * 359.74408 * 4 3 2 6 6 C 1.35075 * 126.03072 * 180.02562 * 2 1 3 7 7 O 1.35764 * 126.18091 * 359.97438 * 6 2 1 8 8 C 1.51279 * 109.57940 * 179.76685 * 5 4 3 9 9 C 1.54345 * 105.26903 * 343.18701 * 8 5 4 10 10 H 1.09007 * 110.93171 * 267.92314 * 9 8 5 11 11 C 1.50705 * 110.77135 * 144.58988 * 9 8 5 12 12 H 1.08003 * 119.99486 * 5.30096 * 11 9 8 13 13 C 1.37874 * 120.00405 * 185.29431 * 11 9 8 14 14 N 1.31521 * 119.99572 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00171 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47053 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46913 * 120.00132 * 15 13 11 18 18 H 1.48499 * 109.47198 * 239.99938 * 15 13 11 19 19 C 1.51334 * 142.30888 * 180.02562 * 4 3 2 20 20 H 1.09000 * 109.46606 * 269.97218 * 1 2 3 21 21 H 1.08997 * 109.47331 * 29.97268 * 1 2 3 22 22 H 1.09000 * 109.47184 * 149.97438 * 1 2 3 23 23 H 0.96696 * 114.00165 * 90.02743 * 7 6 2 24 24 H 1.08998 * 110.44941 * 224.13732 * 8 5 4 25 25 H 1.08996 * 110.15520 * 102.08287 * 8 5 4 26 26 H 0.97000 * 119.99482 * 180.02562 * 14 13 11 27 27 H 1.09003 * 110.29010 * 316.12763 * 19 4 3 28 28 H 1.08997 * 110.29836 * 78.25580 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2886 1.1321 0.0000 4 6 3.5375 0.7350 -0.0006 5 6 3.5508 -0.6629 0.0050 6 6 2.2596 -1.0924 -0.0005 7 8 1.8448 -2.3851 -0.0006 8 6 4.9808 -1.1564 -0.0013 9 6 5.8274 0.0567 -0.4418 10 1 5.9700 0.0602 -1.5224 11 6 7.1555 0.0684 0.2704 12 1 7.4308 -0.7547 0.9132 13 6 8.0191 1.1298 0.1014 14 7 7.6837 2.1323 -0.6811 15 14 9.6650 1.1446 0.9847 16 1 9.8009 -0.0899 1.7988 17 1 10.7624 1.2016 -0.0142 18 1 9.7403 2.3336 1.8712 19 6 4.9591 1.2538 -0.0005 20 1 -0.3632 -0.0005 1.0277 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3633 -0.8898 -0.5142 23 1 1.7247 -2.7596 -0.8840 24 1 5.0976 -1.9763 -0.7099 25 1 5.2718 -1.4773 0.9989 26 1 8.2914 2.8788 -0.8003 27 1 5.0614 2.0763 -0.7086 28 1 5.2432 1.5782 1.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259585426.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:49 Heat of formation + Delta-G solvation = 39.736779 kcal Electronic energy + Delta-G solvation = -13401.360161 eV Core-core repulsion = 11033.560214 eV Total energy + Delta-G solvation = -2367.799947 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.99435 -37.09932 -35.78306 -32.68158 -31.07276 -28.88023 -26.58930 -25.78550 -24.01962 -20.72456 -19.60177 -19.18040 -17.30494 -16.39021 -15.90666 -14.96716 -14.44385 -14.12131 -13.59756 -13.35481 -12.47971 -12.30789 -12.08881 -11.65397 -11.52638 -11.33523 -10.92078 -10.56759 -10.44862 -10.08341 -9.50207 -9.28452 -8.96212 -8.49192 -8.39413 -7.57742 -6.03333 -4.06884 2.14458 2.72086 3.31536 3.36372 3.40176 3.44112 4.32487 4.44143 4.64173 5.20181 5.27174 5.36841 5.47534 6.00122 6.20042 6.28498 6.54335 6.75716 6.86676 7.02786 7.05523 7.21278 7.29293 7.59693 7.80377 7.92009 7.98697 8.32306 8.40538 8.96313 9.58224 11.06553 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.066591 B = 0.008005 C = 0.007401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.374883 B = 3497.015255 C = 3782.131301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.397 5.397 3 N -0.284 5.284 4 C 0.076 3.924 5 C -0.254 4.254 6 C 0.242 3.758 7 O -0.468 6.468 8 C -0.031 4.031 9 C 0.058 3.942 10 H 0.038 0.962 11 C -0.514 4.514 12 H 0.062 0.938 13 C 0.063 3.937 14 N -0.888 5.888 15 Si 0.893 3.107 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.013 4.013 20 H 0.067 0.933 21 H 0.085 0.915 22 H 0.077 0.923 23 H 0.387 0.613 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.261 0.739 27 H 0.076 0.924 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.586 -5.200 -0.544 11.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.190 5.190 3 N -0.109 5.109 4 C -0.090 4.090 5 C -0.266 4.266 6 C 0.076 3.924 7 O -0.271 6.271 8 C -0.069 4.069 9 C 0.039 3.961 10 H 0.056 0.944 11 C -0.552 4.552 12 H 0.080 0.920 13 C -0.139 4.139 14 N -0.526 5.526 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.053 4.053 20 H 0.085 0.915 21 H 0.103 0.897 22 H 0.096 0.904 23 H 0.242 0.758 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.456 -4.101 0.004 12.168 hybrid contribution 0.962 -0.746 -0.048 1.219 sum -10.494 -4.847 -0.043 11.560 Atomic orbital electron populations 1.21602 0.75273 1.03485 1.02741 1.48909 1.06118 1.03320 1.60694 1.77169 1.01178 1.04490 1.28052 1.24181 0.94638 0.95218 0.94934 1.21165 0.94348 0.96628 1.14442 1.17821 0.88296 0.80004 1.06269 1.84868 1.89009 1.19939 1.33250 1.20658 0.86269 0.99350 1.00631 1.19435 0.92196 0.87505 0.96954 0.94361 1.21143 1.00504 1.05426 1.28135 0.91996 1.25003 0.98231 0.95569 0.95083 1.69974 1.36586 1.08782 1.37286 0.86525 0.83846 0.78033 0.79550 1.19700 1.21058 1.21024 1.20984 0.80795 1.01020 1.02493 0.91463 0.89667 0.90403 0.75757 0.93228 0.91549 0.92904 0.90543 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.32 11.42 59.85 0.68 2.01 15 2 N -0.40 -7.13 4.01 -68.26 -0.27 -7.40 15 3 N -0.28 -6.09 12.57 33.85 0.43 -5.66 15 4 C 0.08 1.73 8.09 -82.03 -0.66 1.07 15 5 C -0.25 -5.41 6.90 -104.53 -0.72 -6.13 15 6 C 0.24 4.49 7.98 -16.90 -0.13 4.36 15 7 O -0.47 -6.91 13.57 -19.00 -0.26 -7.17 15 8 C -0.03 -0.67 6.29 -26.89 -0.17 -0.84 15 9 C 0.06 1.44 2.99 -90.37 -0.27 1.17 15 10 H 0.04 1.01 8.14 -51.93 -0.42 0.58 15 11 C -0.51 -13.73 8.41 -34.44 -0.29 -14.02 15 12 H 0.06 1.63 7.65 -52.48 -0.40 1.22 15 13 C 0.06 1.71 5.33 -17.82 -0.10 1.61 15 14 N -0.89 -24.87 12.32 55.43 0.68 -24.19 15 15 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 15 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 15 19 C -0.01 -0.32 5.38 -26.87 -0.14 -0.46 15 20 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.08 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.08 0.71 8.13 -51.93 -0.42 0.29 15 23 H 0.39 3.63 9.06 45.56 0.41 4.04 15 24 H 0.05 0.99 8.14 -51.93 -0.42 0.56 15 25 H 0.07 1.46 7.79 -51.93 -0.40 1.05 15 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 27 H 0.08 1.94 7.87 -51.93 -0.41 1.53 15 28 H 0.08 1.98 7.89 -51.93 -0.41 1.57 15 LS Contribution 245.39 15.07 3.70 3.70 Total: -1.00 -31.15 245.39 -5.01 -36.16 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -2.46 Total: -0.01 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -1.80 Total: -11.23 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.83 Total: -37.25 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.26 Total: -7.17 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.15 -5.01 -36.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259585426.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.895 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds