Wall clock time and date at job start Mon Mar 30 2020 02:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.39998 * 126.03211 * 2 1 4 4 C 1.31056 * 108.39145 * 180.02562 * 3 2 1 5 5 C 1.39801 * 108.18443 * 359.74408 * 4 3 2 6 6 C 1.35075 * 126.03072 * 180.02562 * 2 1 3 7 7 O 1.35764 * 126.18091 * 359.97438 * 6 2 1 8 8 C 1.51279 * 109.57940 * 179.76685 * 5 4 3 9 9 C 1.54345 * 105.26903 * 343.18701 * 8 5 4 10 10 H 1.09007 * 110.93171 * 267.92314 * 9 8 5 11 11 C 1.50705 * 110.77135 * 144.58988 * 9 8 5 12 12 H 1.08003 * 119.99486 * 5.30096 * 11 9 8 13 13 C 1.37874 * 120.00405 * 185.29431 * 11 9 8 14 14 N 1.31521 * 119.99572 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00171 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47053 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46913 * 120.00132 * 15 13 11 18 18 H 1.48499 * 109.47198 * 239.99938 * 15 13 11 19 19 C 1.51334 * 142.30888 * 180.02562 * 4 3 2 20 20 H 1.09000 * 109.46606 * 269.97218 * 1 2 3 21 21 H 1.08997 * 109.47331 * 29.97268 * 1 2 3 22 22 H 1.09000 * 109.47184 * 149.97438 * 1 2 3 23 23 H 0.96696 * 114.00165 * 90.02743 * 7 6 2 24 24 H 1.08998 * 110.44941 * 224.13732 * 8 5 4 25 25 H 1.08996 * 110.15520 * 102.08287 * 8 5 4 26 26 H 0.97000 * 119.99482 * 180.02562 * 14 13 11 27 27 H 1.09003 * 110.29010 * 316.12763 * 19 4 3 28 28 H 1.08997 * 110.29836 * 78.25580 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2886 1.1321 0.0000 4 6 3.5375 0.7350 -0.0006 5 6 3.5508 -0.6629 0.0050 6 6 2.2596 -1.0924 -0.0005 7 8 1.8448 -2.3851 -0.0006 8 6 4.9808 -1.1564 -0.0013 9 6 5.8274 0.0567 -0.4418 10 1 5.9700 0.0602 -1.5224 11 6 7.1555 0.0684 0.2704 12 1 7.4308 -0.7547 0.9132 13 6 8.0191 1.1298 0.1014 14 7 7.6837 2.1323 -0.6811 15 14 9.6650 1.1446 0.9847 16 1 9.8009 -0.0899 1.7988 17 1 10.7624 1.2016 -0.0142 18 1 9.7403 2.3336 1.8712 19 6 4.9591 1.2538 -0.0005 20 1 -0.3632 -0.0005 1.0277 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3633 -0.8898 -0.5142 23 1 1.7247 -2.7596 -0.8840 24 1 5.0976 -1.9763 -0.7099 25 1 5.2718 -1.4773 0.9989 26 1 8.2914 2.8788 -0.8003 27 1 5.0614 2.0763 -0.7086 28 1 5.2432 1.5782 1.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259585426.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:49 Heat of formation + Delta-G solvation = 16.767547 kcal Electronic energy + Delta-G solvation = -13402.356182 eV Core-core repulsion = 11033.560214 eV Total energy + Delta-G solvation = -2368.795968 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.52863 -38.47258 -37.42933 -34.50434 -32.67004 -30.47494 -28.35273 -27.43367 -25.70511 -22.27687 -21.27280 -20.78603 -18.73734 -18.39368 -17.31501 -16.60138 -16.13934 -15.64186 -15.12310 -14.82369 -14.14252 -13.59841 -13.47538 -13.43004 -13.26007 -12.94156 -12.74973 -12.35593 -12.29404 -11.89443 -11.21091 -11.05460 -10.94705 -10.53406 -9.98975 -9.14089 -8.09839 -6.20395 0.69490 1.37292 1.47040 1.49169 1.60632 1.68946 2.48422 2.96541 3.19695 3.31479 4.20930 4.32315 4.39550 4.58939 4.60919 4.63216 4.68450 5.12160 5.13604 5.18637 5.36272 5.54442 5.63384 5.76651 5.85695 5.94665 6.36580 6.68444 6.75235 6.89726 7.48211 9.00091 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.066591 B = 0.008005 C = 0.007401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.374883 B = 3497.015255 C = 3782.131301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.384 5.384 3 N -0.304 5.304 4 C 0.051 3.949 5 C -0.287 4.287 6 C 0.272 3.728 7 O -0.460 6.460 8 C -0.018 4.018 9 C 0.053 3.947 10 H 0.014 0.986 11 C -0.530 4.530 12 H 0.063 0.937 13 C 0.015 3.985 14 N -0.919 5.919 15 Si 0.958 3.042 16 H -0.264 1.264 17 H -0.280 1.280 18 H -0.283 1.283 19 C 0.001 3.999 20 H 0.083 0.917 21 H 0.097 0.903 22 H 0.114 0.886 23 H 0.417 0.583 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.262 0.738 27 H 0.051 0.949 28 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.053 -6.727 -0.176 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.178 5.178 3 N -0.130 5.130 4 C -0.114 4.114 5 C -0.299 4.299 6 C 0.102 3.898 7 O -0.267 6.267 8 C -0.056 4.056 9 C 0.034 3.966 10 H 0.032 0.968 11 C -0.568 4.568 12 H 0.081 0.919 13 C -0.184 4.184 14 N -0.558 5.558 15 Si 0.783 3.217 16 H -0.188 1.188 17 H -0.206 1.206 18 H -0.209 1.209 19 C -0.039 4.039 20 H 0.101 0.899 21 H 0.116 0.884 22 H 0.133 0.867 23 H 0.277 0.723 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.948 -5.645 0.354 14.130 hybrid contribution 1.217 -0.338 -0.191 1.278 sum -11.731 -5.983 0.163 13.170 Atomic orbital electron populations 1.22162 0.71545 1.06034 1.04587 1.49302 1.07991 1.02193 1.58277 1.77062 1.00926 1.06412 1.28641 1.23739 0.94362 0.96087 0.97193 1.21124 0.95262 0.95908 1.17603 1.17646 0.87371 0.81449 1.03290 1.84820 1.88481 1.17617 1.35746 1.20379 0.86539 0.98203 1.00497 1.19352 0.92477 0.89532 0.95278 0.96823 1.21465 1.01532 1.05543 1.28221 0.91871 1.25779 1.01668 0.95193 0.95767 1.70100 1.37788 1.09342 1.38539 0.85504 0.79579 0.78146 0.78424 1.18849 1.20626 1.20876 1.20557 0.82919 1.00023 1.00437 0.89893 0.88391 0.86718 0.72273 0.91628 0.92147 0.92869 0.93025 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.89 11.42 127.77 1.46 3.34 15 2 N -0.38 -12.71 4.01 -481.22 -1.93 -14.65 15 3 N -0.30 -12.83 12.57 -46.82 -0.59 -13.41 15 4 C 0.05 2.33 8.09 43.25 0.35 2.68 15 5 C -0.29 -12.01 6.90 -19.81 -0.14 -12.15 15 6 C 0.27 9.28 7.98 83.69 0.67 9.95 15 7 O -0.46 -11.52 13.57 -90.91 -1.23 -12.76 15 8 C -0.02 -0.78 6.29 30.49 0.19 -0.59 15 9 C 0.05 2.71 2.99 -10.63 -0.03 2.68 15 10 H 0.01 0.75 8.14 -2.38 -0.02 0.73 15 11 C -0.53 -28.94 8.41 25.60 0.22 -28.72 15 12 H 0.06 3.35 7.65 -2.91 -0.02 3.33 15 13 C 0.02 0.84 5.33 84.65 0.45 1.29 15 14 N -0.92 -53.03 12.32 21.45 0.26 -52.77 15 15 Si 0.96 43.16 29.54 68.60 2.03 45.19 15 16 H -0.26 -11.47 7.11 99.48 0.71 -10.76 15 17 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 19 C 0.00 0.03 5.38 30.50 0.16 0.20 15 20 H 0.08 1.45 8.14 -2.39 -0.02 1.43 15 21 H 0.10 1.73 8.14 -2.39 -0.02 1.71 15 22 H 0.11 1.47 8.13 -2.39 -0.02 1.45 15 23 H 0.42 5.66 9.06 -74.06 -0.67 4.99 15 24 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 25 H 0.06 2.65 7.79 -2.39 -0.02 2.63 15 26 H 0.26 14.35 8.31 -92.71 -0.77 13.58 15 27 H 0.05 2.80 7.87 -2.39 -0.02 2.78 15 28 H 0.06 3.10 7.89 -2.39 -0.02 3.08 15 Total: -1.00 -68.15 245.39 2.37 -65.78 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 0.50 Total: 3.93 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 3.33 Total: -21.32 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -2.26 Total: -80.83 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -1.23 Total: -12.76 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -68.15 2.37 -65.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259585426.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.551 kcal (2) G-P(sol) polarization free energy of solvation -68.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds