Wall clock time and date at job start Mon Mar 30 2020 02:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40002 * 126.02744 * 2 1 4 4 C 1.31058 * 108.38605 * 179.97438 * 3 2 1 5 5 C 1.39797 * 108.18893 * 0.02562 * 4 3 2 6 6 C 1.35073 * 126.03198 * 179.68703 * 2 1 3 7 7 O 1.35767 * 126.18049 * 0.04064 * 6 2 1 8 8 C 1.51268 * 109.58165 * 180.02562 * 5 4 3 9 9 C 1.54345 * 105.20895 * 17.21683 * 8 5 4 10 10 H 1.09001 * 110.76918 * 91.77045 * 9 8 5 11 11 C 1.50691 * 110.77260 * 215.18298 * 9 8 5 12 12 H 1.08000 * 120.00359 * 359.97438 * 11 9 8 13 13 C 1.37884 * 120.00022 * 180.02562 * 11 9 8 14 14 N 1.31512 * 119.99663 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00041 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47163 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46957 * 119.99489 * 15 13 11 18 18 H 1.48491 * 109.47236 * 239.99703 * 15 13 11 19 19 C 1.51341 * 142.30738 * 179.97438 * 4 3 2 20 20 H 1.08999 * 109.46871 * 90.02623 * 1 2 3 21 21 H 1.08994 * 109.46947 * 210.02331 * 1 2 3 22 22 H 1.08997 * 109.47271 * 330.02848 * 1 2 3 23 23 H 0.96700 * 113.99353 * 90.02934 * 7 6 2 24 24 H 1.09007 * 110.29541 * 136.15186 * 8 5 4 25 25 H 1.08998 * 110.29930 * 258.28226 * 8 5 4 26 26 H 0.97002 * 119.99543 * 180.02562 * 14 13 11 27 27 H 1.08999 * 110.29215 * 281.70918 * 19 4 3 28 28 H 1.08994 * 110.29074 * 43.84276 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2885 1.1322 0.0000 4 6 3.5375 0.7351 0.0006 5 6 3.5508 -0.6628 0.0003 6 6 2.2596 -1.0923 0.0060 7 8 1.8449 -2.3851 0.0123 8 6 4.9808 -1.1562 0.0016 9 6 5.8271 0.0566 0.4434 10 1 5.9660 0.0577 1.5246 11 6 7.1557 0.0686 -0.2675 12 1 7.3963 -0.7104 -0.9757 13 6 8.0647 1.0737 -0.0131 14 7 7.7719 2.0221 0.8497 15 14 9.7119 1.0882 -0.8939 16 1 9.7952 -0.0798 -1.8072 17 1 9.8416 2.3412 -1.6804 18 1 10.8081 1.0152 0.1052 19 6 4.9591 1.2539 0.0005 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3633 -0.8897 0.5142 22 1 -0.3633 0.8902 0.5134 23 1 1.7257 -2.7641 -0.8694 24 1 5.0971 -1.9766 0.7098 25 1 5.2715 -1.4756 -0.9992 26 1 8.4113 2.7293 1.0284 27 1 5.2433 1.5778 -1.0007 28 1 5.0612 2.0767 0.7081 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259585428.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:51 Heat of formation + Delta-G solvation = 16.418046 kcal Electronic energy + Delta-G solvation = -13389.130261 eV Core-core repulsion = 11020.319137 eV Total energy + Delta-G solvation = -2368.811123 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.52959 -38.46955 -37.42185 -34.50697 -32.67848 -30.48680 -28.34453 -27.44143 -25.70278 -22.29365 -21.25221 -20.78248 -18.86440 -18.30186 -17.16909 -16.65274 -16.38789 -15.36210 -15.24622 -14.81494 -14.14236 -13.62146 -13.51074 -13.37491 -13.28145 -12.93840 -12.73351 -12.35420 -12.30936 -11.87101 -11.22102 -11.05593 -10.96290 -10.53586 -9.99073 -9.14239 -8.09862 -6.20610 0.68983 1.36908 1.47799 1.49575 1.61136 1.68776 2.48662 2.95983 3.19728 3.32771 4.21072 4.31584 4.40546 4.57304 4.59991 4.63451 4.69505 5.10325 5.15527 5.17413 5.35736 5.53126 5.62877 5.74863 5.85509 5.94375 6.36460 6.68158 6.75285 6.90483 7.48207 9.00658 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.066896 B = 0.007943 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.462777 B = 3524.088813 C = 3802.162863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.384 5.384 3 N -0.303 5.303 4 C 0.051 3.949 5 C -0.287 4.287 6 C 0.272 3.728 7 O -0.461 6.461 8 C -0.018 4.018 9 C 0.052 3.948 10 H 0.009 0.991 11 C -0.527 4.527 12 H 0.066 0.934 13 C 0.014 3.986 14 N -0.921 5.921 15 Si 0.959 3.041 16 H -0.262 1.262 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.003 4.003 20 H 0.094 0.906 21 H 0.108 0.892 22 H 0.094 0.906 23 H 0.418 0.582 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.262 0.738 27 H 0.064 0.936 28 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.162 -6.575 -3.972 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.178 5.178 3 N -0.130 5.130 4 C -0.113 4.113 5 C -0.299 4.299 6 C 0.102 3.898 7 O -0.267 6.267 8 C -0.056 4.056 9 C 0.032 3.968 10 H 0.027 0.973 11 C -0.565 4.565 12 H 0.084 0.916 13 C -0.185 4.185 14 N -0.560 5.560 15 Si 0.785 3.215 16 H -0.186 1.186 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.043 4.043 20 H 0.112 0.888 21 H 0.126 0.874 22 H 0.113 0.887 23 H 0.277 0.723 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.052 -5.501 -3.302 14.544 hybrid contribution 1.214 -0.346 -0.622 1.407 sum -11.838 -5.847 -3.924 13.774 Atomic orbital electron populations 1.22175 0.71544 1.05812 1.04931 1.49303 1.07991 1.02189 1.58279 1.77063 1.00915 1.06418 1.28605 1.23707 0.94314 0.96067 0.97239 1.21136 0.95273 0.95922 1.17552 1.17662 0.87366 0.81456 1.03275 1.84808 1.88481 1.17591 1.35829 1.20391 0.86525 0.98050 1.00684 1.19363 0.92632 0.89590 0.95166 0.97276 1.21456 1.00260 1.10231 1.24532 0.91590 1.25819 1.01906 0.95158 0.95664 1.70107 1.36981 1.13716 1.35199 0.85481 0.79399 0.78161 0.78469 1.18612 1.20820 1.20814 1.20635 0.83102 0.99995 1.00577 0.88757 0.87354 0.88747 0.72252 0.92410 0.91197 0.92886 0.91725 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.85 11.42 127.77 1.46 3.31 15 2 N -0.38 -12.66 4.01 -481.22 -1.93 -14.60 15 3 N -0.30 -12.74 12.57 -46.81 -0.59 -13.33 15 4 C 0.05 2.34 8.10 43.26 0.35 2.70 15 5 C -0.29 -11.97 6.89 -19.81 -0.14 -12.11 15 6 C 0.27 9.27 7.98 83.69 0.67 9.93 15 7 O -0.46 -11.55 13.57 -90.94 -1.23 -12.78 15 8 C -0.02 -0.80 6.30 30.48 0.19 -0.60 15 9 C 0.05 2.68 2.89 -10.62 -0.03 2.65 15 10 H 0.01 0.52 8.14 -2.39 -0.02 0.50 15 11 C -0.53 -28.64 8.37 25.60 0.21 -28.42 15 12 H 0.07 3.44 7.61 -2.91 -0.02 3.42 15 13 C 0.01 0.75 5.36 84.66 0.45 1.21 15 14 N -0.92 -53.58 12.72 21.45 0.27 -53.31 15 15 Si 0.96 42.96 29.54 68.60 2.03 44.98 15 16 H -0.26 -11.20 7.11 99.48 0.71 -10.49 15 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 15 19 C 0.00 -0.15 5.65 30.52 0.17 0.02 15 20 H 0.09 1.39 8.14 -2.39 -0.02 1.37 15 21 H 0.11 1.61 8.13 -2.39 -0.02 1.59 15 22 H 0.09 1.74 8.14 -2.39 -0.02 1.72 15 23 H 0.42 5.67 9.06 -74.06 -0.67 5.00 15 24 H 0.06 2.38 8.14 -2.38 -0.02 2.36 15 25 H 0.07 2.91 7.75 -2.39 -0.02 2.89 15 26 H 0.26 14.45 8.31 -92.71 -0.77 13.68 15 27 H 0.06 3.34 7.89 -2.39 -0.02 3.32 15 28 H 0.05 2.59 8.06 -2.39 -0.02 2.57 15 Total: -1.00 -68.34 246.08 2.39 -65.95 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 0.50 Total: 4.41 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 3.34 Total: -21.33 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -2.25 Total: -81.23 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -1.23 Total: -12.78 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -68.34 2.39 -65.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259585428.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.368 kcal (2) G-P(sol) polarization free energy of solvation -68.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds