Wall clock time and date at job start Mon Mar 30 2020 02:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40002 * 126.02875 * 2 1 4 4 C 1.31057 * 108.39039 * 180.02562 * 3 2 1 5 5 C 1.39800 * 108.18440 * 359.97438 * 4 3 2 6 6 C 1.35072 * 126.03148 * 180.02562 * 2 1 3 7 7 O 1.35759 * 126.18348 * 359.97438 * 6 2 1 8 8 C 1.51275 * 109.58122 * 180.02562 * 5 4 3 9 9 C 1.54339 * 105.21036 * 17.19493 * 8 5 4 10 10 C 1.51329 * 142.31139 * 179.97438 * 4 3 2 11 11 H 1.09004 * 110.29529 * 43.76137 * 10 4 3 12 12 C 1.50698 * 110.29609 * 281.73528 * 10 4 3 13 13 H 1.08005 * 119.99819 * 241.45466 * 12 10 4 14 14 C 1.37875 * 120.00046 * 61.44808 * 12 10 4 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 H 1.08994 * 109.47208 * 269.97201 * 1 2 3 21 21 H 1.08994 * 109.46894 * 29.97795 * 1 2 3 22 22 H 1.08999 * 109.46659 * 149.97530 * 1 2 3 23 23 H 0.96695 * 114.00071 * 269.99599 * 7 6 2 24 24 H 1.09000 * 110.29845 * 136.15328 * 8 5 4 25 25 H 1.09000 * 110.29743 * 258.19495 * 8 5 4 26 26 H 1.09000 * 110.77741 * 215.19658 * 9 8 5 27 27 H 1.08996 * 110.75487 * 91.78933 * 9 8 5 28 28 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2885 1.1322 0.0000 4 6 3.5375 0.7351 -0.0006 5 6 3.5508 -0.6628 -0.0003 6 6 2.2596 -1.0923 -0.0005 7 8 1.8449 -2.3850 -0.0006 8 6 4.9808 -1.1562 -0.0003 9 6 5.8277 0.0568 0.4397 10 6 4.9590 1.2539 -0.0013 11 1 5.0614 2.0773 0.7056 12 6 5.3508 1.7030 -1.3855 13 1 6.1717 1.2223 -1.8970 14 6 4.6614 2.7274 -1.9989 15 7 3.6622 3.3130 -1.3759 16 14 5.1466 3.2835 -3.7149 17 1 4.2572 4.3918 -4.1461 18 1 5.0142 2.1457 -4.6600 19 1 6.5546 3.7555 -3.7027 20 1 -0.3633 -0.0005 1.0276 21 1 -0.3633 0.8901 -0.5135 22 1 -0.3632 -0.8898 -0.5142 23 1 1.7251 -2.7597 0.8827 24 1 5.0979 -1.9764 0.7080 25 1 5.2700 -1.4774 -1.0010 26 1 6.7880 0.0653 -0.0758 27 1 5.9679 0.0582 1.5206 28 1 3.4100 3.0240 -0.4849 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259782543.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:54 Heat of formation + Delta-G solvation = 41.444952 kcal Electronic energy + Delta-G solvation = -13829.966536 eV Core-core repulsion = 11462.240660 eV Total energy + Delta-G solvation = -2367.725875 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.76054 -37.05278 -35.73316 -32.50944 -31.33782 -28.53451 -26.34203 -25.50414 -23.44253 -21.03247 -19.82942 -18.96928 -17.58398 -16.44957 -15.58876 -14.67804 -14.24471 -13.85134 -13.67758 -13.36471 -12.37050 -12.24891 -11.98952 -11.92924 -11.45722 -11.04545 -10.78950 -10.58108 -10.32349 -10.06282 -9.66590 -9.21574 -8.88360 -8.28262 -7.95656 -7.39727 -6.24631 -4.01266 2.42340 3.02128 3.48018 3.51369 3.69365 3.77349 4.50871 4.61210 4.85042 5.39458 5.47363 5.53886 5.73753 5.93149 5.98240 6.12675 6.31860 6.51731 6.73631 6.81201 6.91149 7.02771 7.18389 7.40604 7.60547 8.12208 8.20865 8.50577 8.72044 8.99247 9.73285 11.16697 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.033459 B = 0.012673 C = 0.010525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.639982 B = 2208.858713 C = 2659.716633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.401 5.401 3 N -0.260 5.260 4 C 0.108 3.892 5 C -0.273 4.273 6 C 0.241 3.759 7 O -0.471 6.471 8 C -0.019 4.019 9 C -0.105 4.105 10 C 0.107 3.893 11 H 0.029 0.971 12 C -0.595 4.595 13 H 0.057 0.943 14 C 0.020 3.980 15 N -0.887 5.887 16 Si 1.067 2.933 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.286 1.286 20 H 0.062 0.938 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.383 0.617 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 -8.585 4.293 10.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.193 5.193 3 N -0.083 5.083 4 C -0.060 4.060 5 C -0.285 4.285 6 C 0.074 3.926 7 O -0.273 6.273 8 C -0.058 4.058 9 C -0.143 4.143 10 C 0.087 3.913 11 H 0.047 0.953 12 C -0.634 4.634 13 H 0.075 0.925 14 C -0.188 4.188 15 N -0.521 5.521 16 Si 0.895 3.105 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.213 1.213 20 H 0.081 0.919 21 H 0.104 0.896 22 H 0.095 0.905 23 H 0.238 0.762 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.181 -6.558 2.495 8.168 hybrid contribution 0.367 -2.093 1.542 2.626 sum -3.814 -8.651 4.037 10.280 Atomic orbital electron populations 1.21571 0.75761 1.03856 1.02046 1.49135 1.06119 1.03547 1.60459 1.77503 1.01188 1.02864 1.26709 1.24308 0.94903 0.93846 0.92944 1.20714 0.93477 0.96982 1.17345 1.17745 0.88355 0.79839 1.06639 1.84858 1.89150 1.20390 1.32939 1.20166 0.88364 0.96924 1.00310 1.22295 0.98634 0.94748 0.98638 1.18110 0.81854 0.93016 0.98346 0.95267 1.21792 1.19410 1.21237 1.00935 0.92500 1.25812 0.94149 0.94022 1.04840 1.70640 1.24966 1.40138 1.16388 0.83589 0.75763 0.76260 0.74885 1.20854 1.21671 1.21289 0.91941 0.89558 0.90455 0.76247 0.93228 0.91524 0.90817 0.93121 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.69 11.42 59.85 0.68 2.37 15 2 N -0.40 -8.59 4.01 -68.26 -0.27 -8.86 15 3 N -0.26 -6.77 11.24 33.85 0.38 -6.39 15 4 C 0.11 2.80 6.13 -82.03 -0.50 2.30 15 5 C -0.27 -6.26 6.89 -104.53 -0.72 -6.98 15 6 C 0.24 5.02 7.98 -16.90 -0.13 4.88 15 7 O -0.47 -7.71 13.57 -18.99 -0.26 -7.97 15 8 C -0.02 -0.39 6.75 -26.90 -0.18 -0.57 15 9 C -0.11 -2.19 6.56 -25.32 -0.17 -2.35 15 10 C 0.11 2.79 2.49 -91.91 -0.23 2.56 15 11 H 0.03 0.80 8.04 -51.93 -0.42 0.38 15 12 C -0.60 -16.93 8.53 -34.44 -0.29 -17.22 15 13 H 0.06 1.57 7.57 -52.48 -0.40 1.17 15 14 C 0.02 0.59 5.32 -17.82 -0.09 0.50 15 15 N -0.89 -27.66 13.32 55.43 0.74 -26.92 15 16 Si 1.07 25.88 29.90 -169.99 -5.08 20.79 15 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 15 20 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.09 1.33 8.14 -51.93 -0.42 0.91 15 22 H 0.08 1.01 8.13 -51.93 -0.42 0.59 15 23 H 0.38 4.06 9.06 45.56 0.41 4.47 15 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.07 1.36 8.14 -51.93 -0.42 0.93 15 26 H 0.07 1.46 7.74 -51.93 -0.40 1.06 15 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 28 H 0.29 8.95 5.27 -40.82 -0.22 8.73 15 LS Contribution 241.97 15.07 3.65 3.65 Total: -1.00 -34.90 241.97 -4.84 -39.74 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -2.35 Total: 0.47 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -1.64 Total: -14.51 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.84 Total: -42.17 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.26 Total: -7.97 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.08 Total: 20.79 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -34.90 -4.84 -39.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259782543.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.187 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds