Wall clock time and date at job start Mon Mar 30 2020 02:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40002 * 126.02875 * 2 1 4 4 C 1.31057 * 108.39039 * 180.02562 * 3 2 1 5 5 C 1.39800 * 108.18440 * 359.97438 * 4 3 2 6 6 C 1.35072 * 126.03148 * 180.02562 * 2 1 3 7 7 O 1.35759 * 126.18348 * 359.97438 * 6 2 1 8 8 C 1.51275 * 109.58122 * 180.02562 * 5 4 3 9 9 C 1.54339 * 105.21036 * 17.19493 * 8 5 4 10 10 C 1.51329 * 142.31139 * 179.97438 * 4 3 2 11 11 H 1.09004 * 110.29529 * 43.76137 * 10 4 3 12 12 C 1.50698 * 110.29609 * 281.73528 * 10 4 3 13 13 H 1.08005 * 119.99819 * 241.45466 * 12 10 4 14 14 C 1.37875 * 120.00046 * 61.44808 * 12 10 4 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 H 1.08994 * 109.47208 * 269.97201 * 1 2 3 21 21 H 1.08994 * 109.46894 * 29.97795 * 1 2 3 22 22 H 1.08999 * 109.46659 * 149.97530 * 1 2 3 23 23 H 0.96695 * 114.00071 * 269.99599 * 7 6 2 24 24 H 1.09000 * 110.29845 * 136.15328 * 8 5 4 25 25 H 1.09000 * 110.29743 * 258.19495 * 8 5 4 26 26 H 1.09000 * 110.77741 * 215.19658 * 9 8 5 27 27 H 1.08996 * 110.75487 * 91.78933 * 9 8 5 28 28 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2885 1.1322 0.0000 4 6 3.5375 0.7351 -0.0006 5 6 3.5508 -0.6628 -0.0003 6 6 2.2596 -1.0923 -0.0005 7 8 1.8449 -2.3850 -0.0006 8 6 4.9808 -1.1562 -0.0003 9 6 5.8277 0.0568 0.4397 10 6 4.9590 1.2539 -0.0013 11 1 5.0614 2.0773 0.7056 12 6 5.3508 1.7030 -1.3855 13 1 6.1717 1.2223 -1.8970 14 6 4.6614 2.7274 -1.9989 15 7 3.6622 3.3130 -1.3759 16 14 5.1466 3.2835 -3.7149 17 1 4.2572 4.3918 -4.1461 18 1 5.0142 2.1457 -4.6600 19 1 6.5546 3.7555 -3.7027 20 1 -0.3633 -0.0005 1.0276 21 1 -0.3633 0.8901 -0.5135 22 1 -0.3632 -0.8898 -0.5142 23 1 1.7251 -2.7597 0.8827 24 1 5.0979 -1.9764 0.7080 25 1 5.2700 -1.4774 -1.0010 26 1 6.7880 0.0653 -0.0758 27 1 5.9679 0.0582 1.5206 28 1 3.4100 3.0240 -0.4849 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259782543.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:54 Heat of formation + Delta-G solvation = 14.652515 kcal Electronic energy + Delta-G solvation = -13831.128343 eV Core-core repulsion = 11462.240660 eV Total energy + Delta-G solvation = -2368.887682 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.43947 -38.55946 -37.37925 -34.56458 -32.88939 -30.30179 -28.15687 -27.03114 -25.49095 -22.61861 -21.45406 -20.76763 -19.30411 -18.24855 -17.20696 -16.25652 -15.93859 -15.62375 -15.30824 -14.97021 -14.10280 -13.85080 -13.69547 -13.43377 -13.12410 -12.77142 -12.52250 -12.28213 -12.00880 -11.91177 -11.53558 -10.97095 -10.80627 -10.44266 -9.78794 -9.06199 -8.51339 -6.28307 0.83775 1.49541 1.52006 1.61725 1.79395 1.93967 2.61776 3.04510 3.26236 3.37734 4.13662 4.27234 4.34131 4.41083 4.47963 4.56142 4.66159 4.91551 5.01204 5.19422 5.34931 5.40119 5.49193 5.74241 5.91046 6.08455 6.33163 6.68666 6.76491 6.98461 7.55410 8.89582 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.033459 B = 0.012673 C = 0.010525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.639982 B = 2208.858713 C = 2659.716633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.399 5.399 3 N -0.308 5.308 4 C 0.076 3.924 5 C -0.301 4.301 6 C 0.263 3.737 7 O -0.462 6.462 8 C -0.012 4.012 9 C -0.096 4.096 10 C 0.092 3.908 11 H -0.003 1.003 12 C -0.605 4.605 13 H 0.059 0.941 14 C -0.034 4.034 15 N -0.921 5.921 16 Si 1.112 2.888 17 H -0.289 1.289 18 H -0.279 1.279 19 H -0.261 1.261 20 H 0.093 0.907 21 H 0.079 0.921 22 H 0.106 0.894 23 H 0.415 0.585 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.024 -10.760 4.194 11.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.192 5.192 3 N -0.132 5.132 4 C -0.091 4.091 5 C -0.313 4.313 6 C 0.094 3.906 7 O -0.268 6.268 8 C -0.050 4.050 9 C -0.134 4.134 10 C 0.072 3.928 11 H 0.015 0.985 12 C -0.644 4.644 13 H 0.078 0.922 14 C -0.235 4.235 15 N -0.557 5.557 16 Si 0.934 3.066 17 H -0.215 1.215 18 H -0.205 1.205 19 H -0.186 1.186 20 H 0.112 0.888 21 H 0.098 0.902 22 H 0.125 0.875 23 H 0.274 0.726 24 H 0.107 0.893 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.375 -8.765 2.433 10.094 hybrid contribution 0.296 -1.505 1.660 2.260 sum -4.079 -10.269 4.093 11.784 Atomic orbital electron populations 1.22013 0.72623 1.04992 1.04489 1.49456 1.07853 1.02774 1.59073 1.77336 1.02080 1.05545 1.28265 1.24158 0.94695 0.95702 0.94502 1.21124 0.95494 0.95702 1.19010 1.17708 0.87681 0.81207 1.04043 1.84805 1.88656 1.17721 1.35568 1.20152 0.86510 0.97366 1.00976 1.22256 0.98064 0.92883 1.00164 1.18193 0.83857 0.94246 0.96546 0.98494 1.22182 1.19111 1.21014 1.02050 0.92246 1.27244 0.93718 0.94451 1.08136 1.70732 1.26844 1.41731 1.16383 0.83013 0.76644 0.76011 0.70895 1.21490 1.20493 1.18593 0.88819 0.90186 0.87543 0.72605 0.89340 0.92192 0.90132 0.90788 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.80 11.42 127.77 1.46 4.26 15 2 N -0.40 -16.56 4.01 -481.24 -1.93 -18.49 15 3 N -0.31 -16.30 11.24 -46.82 -0.53 -16.83 15 4 C 0.08 4.00 6.13 43.25 0.26 4.26 15 5 C -0.30 -13.41 6.89 -19.81 -0.14 -13.55 15 6 C 0.26 10.29 7.98 83.69 0.67 10.96 15 7 O -0.46 -13.14 13.57 -90.85 -1.23 -14.37 15 8 C -0.01 -0.45 6.75 30.49 0.21 -0.25 15 9 C -0.10 -3.89 6.56 31.51 0.21 -3.68 15 10 C 0.09 4.90 2.49 -11.63 -0.03 4.88 15 11 H 0.00 -0.17 8.04 -2.38 -0.02 -0.19 15 12 C -0.61 -35.02 8.53 25.60 0.22 -34.80 15 13 H 0.06 3.30 7.57 -2.91 -0.02 3.27 15 14 C -0.03 -2.03 5.32 84.65 0.45 -1.58 15 15 N -0.92 -59.43 13.32 21.45 0.29 -59.15 15 16 Si 1.11 52.52 29.90 68.60 2.05 54.57 15 17 H -0.29 -13.81 7.11 99.48 0.71 -13.10 15 18 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 19 H -0.26 -11.14 7.11 99.48 0.71 -10.44 15 20 H 0.09 2.09 8.14 -2.39 -0.02 2.07 15 21 H 0.08 2.38 8.14 -2.39 -0.02 2.36 15 22 H 0.11 2.40 8.13 -2.39 -0.02 2.38 15 23 H 0.41 6.67 9.06 -74.06 -0.67 6.00 15 24 H 0.09 2.64 8.14 -2.39 -0.02 2.62 15 25 H 0.06 2.32 8.14 -2.39 -0.02 2.31 15 26 H 0.08 3.10 7.74 -2.39 -0.02 3.08 15 27 H 0.07 2.61 8.14 -2.39 -0.02 2.59 15 28 H 0.27 17.98 5.27 -92.71 -0.49 17.49 15 Total: -1.00 -77.90 241.97 2.74 -75.16 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.78 Total: 8.60 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 3.31 Total: -29.50 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -2.17 Total: -94.46 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -1.23 Total: -14.37 kcal Atomic # 14 Polarization: 52.52 SS G_CDS: 2.05 Total: 54.57 kcal Total: -77.90 2.74 -75.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259782543.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.813 kcal (2) G-P(sol) polarization free energy of solvation -77.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds