Wall clock time and date at job start Mon Mar 30 2020 02:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46957 * 2 1 4 4 C 1.50700 * 109.47237 * 120.00025 * 2 1 3 5 5 C 1.38762 * 120.43803 * 275.00147 * 4 2 1 6 6 N 1.32427 * 118.73397 * 179.97438 * 5 4 2 7 7 C 1.32049 * 119.52732 * 359.97438 * 6 5 4 8 8 N 1.31984 * 120.87205 * 0.02562 * 7 6 5 9 9 N 1.28746 * 121.35350 * 359.73097 * 8 7 6 10 10 N 1.46501 * 109.47174 * 239.99828 * 2 1 3 11 11 C 1.46506 * 119.99627 * 299.99803 * 10 2 1 12 12 C 1.36937 * 120.00138 * 120.00009 * 10 2 1 13 13 H 1.07992 * 120.00124 * 322.79852 * 12 10 2 14 14 C 1.38810 * 119.99879 * 142.80117 * 12 10 2 15 15 N 1.31619 * 119.99716 * 156.74468 * 14 12 10 16 16 Si 1.86803 * 120.00345 * 336.74843 * 14 12 10 17 17 H 1.48500 * 109.47371 * 95.73214 * 16 14 12 18 18 H 1.48499 * 109.47120 * 215.73431 * 16 14 12 19 19 H 1.48507 * 109.46803 * 335.73498 * 16 14 12 20 20 H 1.08997 * 109.47178 * 60.00134 * 1 2 3 21 21 H 1.09001 * 109.46981 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47189 * 300.00102 * 1 2 3 23 23 H 1.08001 * 120.63203 * 359.97438 * 5 4 2 24 24 H 1.08001 * 119.56801 * 179.97438 * 7 6 5 25 25 H 1.09001 * 109.46881 * 85.71538 * 11 10 2 26 26 H 1.08998 * 109.47481 * 325.71247 * 11 10 2 27 27 H 1.08998 * 109.47169 * 205.70924 * 11 10 2 28 28 H 0.97004 * 120.00062 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1683 -0.0270 2.4304 6 7 2.6123 -0.6846 3.4907 7 6 2.9128 -1.9659 3.3831 8 7 2.7769 -2.5991 2.2331 9 7 2.3439 -1.9941 1.1824 10 7 2.0183 -0.6906 -1.1962 11 6 1.6644 -2.0933 -1.4279 12 6 2.8056 -0.0252 -2.0976 13 1 2.6149 1.0149 -2.3166 14 6 3.8488 -0.6877 -2.7299 15 7 4.3058 -0.2465 -3.8826 16 14 4.6038 -2.2053 -1.9449 17 1 3.9747 -3.4231 -2.5161 18 1 6.0636 -2.2286 -2.2161 19 1 4.3732 -2.1706 -0.4782 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.9169 1.0211 2.4984 24 1 3.2754 -2.5027 4.2473 25 1 0.6996 -2.1460 -1.9323 26 1 1.6041 -2.6154 -0.4729 27 1 2.4261 -2.5621 -2.0508 28 1 5.0351 -0.7092 -4.3243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259784939.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:22 Heat of formation + Delta-G solvation = 110.206051 kcal Electronic energy + Delta-G solvation = -13844.907389 eV Core-core repulsion = 11512.455970 eV Total energy + Delta-G solvation = -2332.451419 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.51867 -36.77598 -34.60609 -33.14658 -31.35706 -29.68789 -26.24996 -25.22606 -25.19636 -23.26228 -20.19393 -18.36031 -17.30406 -16.75623 -15.47043 -15.34496 -14.96012 -13.82157 -13.76929 -13.09836 -12.67595 -12.32933 -12.14780 -12.04455 -11.72581 -11.40388 -11.26224 -10.76127 -10.46979 -10.34206 -9.91893 -9.61968 -9.57069 -8.89781 -8.52731 -6.87475 -6.05074 -3.46262 0.79361 1.02708 3.39478 3.52012 3.67416 3.78035 3.98238 4.08986 4.38426 4.54577 4.87075 5.04716 5.29276 5.36963 5.57880 5.77982 5.81557 6.04478 6.20282 6.39900 6.60984 6.65984 6.82094 7.02592 7.11099 7.99064 8.29874 8.77017 8.92650 9.65728 10.05906 11.09002 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.035324 B = 0.013459 C = 0.011336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.470608 B = 2079.962250 C = 2469.440804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.218 3.782 3 H 0.097 0.903 4 C 0.024 3.976 5 C 0.116 3.884 6 N -0.475 5.475 7 C 0.201 3.799 8 N -0.285 5.285 9 N -0.168 5.168 10 N -0.589 5.589 11 C 0.100 3.900 12 C -0.278 4.278 13 H 0.081 0.919 14 C 0.040 3.960 15 N -0.895 5.895 16 Si 0.882 3.118 17 H -0.286 1.286 18 H -0.308 1.308 19 H -0.257 1.257 20 H 0.070 0.930 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.182 0.818 24 H 0.201 0.799 25 H 0.010 0.990 26 H 0.067 0.933 27 H 0.043 0.957 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.694 -0.308 11.993 13.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.107 3.893 3 H 0.115 0.885 4 C -0.126 4.126 5 C -0.062 4.062 6 N -0.195 5.195 7 C -0.090 4.090 8 N -0.130 5.130 9 N -0.018 5.018 10 N -0.310 5.310 11 C -0.045 4.045 12 C -0.407 4.407 13 H 0.098 0.902 14 C -0.162 4.162 15 N -0.535 5.535 16 Si 0.712 3.288 17 H -0.214 1.214 18 H -0.236 1.236 19 H -0.181 1.181 20 H 0.089 0.911 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.199 0.801 24 H 0.217 0.783 25 H 0.028 0.972 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.281 -1.418 11.821 13.024 hybrid contribution 0.589 -0.058 0.460 0.750 sum -4.692 -1.475 12.281 13.229 Atomic orbital electron populations 1.22211 0.95847 1.01888 1.01477 1.19653 0.93071 0.95345 0.81241 0.88492 1.25456 0.94478 0.94044 0.98649 1.24012 0.91727 1.01820 0.88608 1.68962 1.09407 1.09370 1.31729 1.26170 0.95386 0.89433 0.97962 1.73740 1.09377 1.32433 0.97481 1.73895 1.03174 1.07718 1.17023 1.44090 1.58052 1.09578 1.19288 1.21675 0.97412 0.85250 1.00124 1.18813 1.08239 0.97879 1.15723 0.90155 1.25502 0.96336 0.98230 0.96099 1.69884 1.27898 1.41876 1.13806 0.86898 0.76921 0.83062 0.81958 1.21355 1.23613 1.18148 0.91084 0.92898 0.93289 0.80115 0.78272 0.97219 0.91519 0.93850 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.18 37.16 0.34 -1.98 15 2 C 0.22 3.99 3.01 -69.08 -0.21 3.78 15 3 H 0.10 1.67 7.87 -51.93 -0.41 1.26 15 4 C 0.02 0.43 5.95 -82.24 -0.49 -0.06 15 5 C 0.12 1.69 11.03 -17.10 -0.19 1.50 15 6 N -0.47 -7.09 10.54 -14.42 -0.15 -7.24 15 7 C 0.20 3.01 12.39 -91.77 -1.14 1.87 15 8 N -0.29 -5.28 11.57 29.30 0.34 -4.94 15 9 N -0.17 -3.39 7.52 33.66 0.25 -3.14 15 10 N -0.59 -13.72 2.31 -174.81 -0.40 -14.12 15 11 C 0.10 2.28 8.16 59.85 0.49 2.77 15 12 C -0.28 -7.61 9.82 -15.06 -0.15 -7.76 15 13 H 0.08 2.31 8.06 -52.49 -0.42 1.88 15 14 C 0.04 1.16 5.26 -17.43 -0.09 1.07 15 15 N -0.89 -27.27 13.97 55.49 0.78 -26.50 15 16 Si 0.88 23.20 25.09 -169.99 -4.26 18.93 15 17 H -0.29 -7.45 6.68 56.52 0.38 -7.08 15 18 H -0.31 -8.26 7.11 56.52 0.40 -7.86 15 19 H -0.26 -6.77 6.59 56.52 0.37 -6.40 15 20 H 0.07 1.09 8.14 -51.93 -0.42 0.66 15 21 H 0.05 0.83 7.67 -51.93 -0.40 0.43 15 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.18 1.88 8.06 -52.49 -0.42 1.46 15 24 H 0.20 2.12 8.06 -52.49 -0.42 1.69 15 25 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 15 26 H 0.07 1.45 5.13 -51.93 -0.27 1.19 15 27 H 0.04 1.08 3.52 -51.93 -0.18 0.90 15 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 LS Contribution 237.27 15.07 3.58 3.58 Total: -1.00 -32.53 237.27 -4.29 -36.83 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: -2.98 Total: -4.57 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.43 Total: 1.19 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.81 Total: -55.95 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.26 Total: 18.93 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -32.53 -4.29 -36.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259784939.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.031 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds