Wall clock time and date at job start Mon Mar 30 2020 02:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46957 * 2 1 4 4 C 1.50700 * 109.47237 * 120.00025 * 2 1 3 5 5 C 1.38762 * 120.43803 * 275.00147 * 4 2 1 6 6 N 1.32427 * 118.73397 * 179.97438 * 5 4 2 7 7 C 1.32049 * 119.52732 * 359.97438 * 6 5 4 8 8 N 1.31984 * 120.87205 * 0.02562 * 7 6 5 9 9 N 1.28746 * 121.35350 * 359.73097 * 8 7 6 10 10 N 1.46501 * 109.47174 * 239.99828 * 2 1 3 11 11 C 1.46506 * 119.99627 * 299.99803 * 10 2 1 12 12 C 1.36937 * 120.00138 * 120.00009 * 10 2 1 13 13 H 1.07992 * 120.00124 * 322.79852 * 12 10 2 14 14 C 1.38810 * 119.99879 * 142.80117 * 12 10 2 15 15 N 1.31619 * 119.99716 * 156.74468 * 14 12 10 16 16 Si 1.86803 * 120.00345 * 336.74843 * 14 12 10 17 17 H 1.48500 * 109.47371 * 95.73214 * 16 14 12 18 18 H 1.48499 * 109.47120 * 215.73431 * 16 14 12 19 19 H 1.48507 * 109.46803 * 335.73498 * 16 14 12 20 20 H 1.08997 * 109.47178 * 60.00134 * 1 2 3 21 21 H 1.09001 * 109.46981 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47189 * 300.00102 * 1 2 3 23 23 H 1.08001 * 120.63203 * 359.97438 * 5 4 2 24 24 H 1.08001 * 119.56801 * 179.97438 * 7 6 5 25 25 H 1.09001 * 109.46881 * 85.71538 * 11 10 2 26 26 H 1.08998 * 109.47481 * 325.71247 * 11 10 2 27 27 H 1.08998 * 109.47169 * 205.70924 * 11 10 2 28 28 H 0.97004 * 120.00062 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1683 -0.0270 2.4304 6 7 2.6123 -0.6846 3.4907 7 6 2.9128 -1.9659 3.3831 8 7 2.7769 -2.5991 2.2331 9 7 2.3439 -1.9941 1.1824 10 7 2.0183 -0.6906 -1.1962 11 6 1.6644 -2.0933 -1.4279 12 6 2.8056 -0.0252 -2.0976 13 1 2.6149 1.0149 -2.3166 14 6 3.8488 -0.6877 -2.7299 15 7 4.3058 -0.2465 -3.8826 16 14 4.6038 -2.2053 -1.9449 17 1 3.9747 -3.4231 -2.5161 18 1 6.0636 -2.2286 -2.2161 19 1 4.3732 -2.1706 -0.4782 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.9169 1.0211 2.4984 24 1 3.2754 -2.5027 4.2473 25 1 0.6996 -2.1460 -1.9323 26 1 1.6041 -2.6154 -0.4729 27 1 2.4261 -2.5621 -2.0508 28 1 5.0351 -0.7092 -4.3243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259784939.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:21 Heat of formation + Delta-G solvation = 87.489039 kcal Electronic energy + Delta-G solvation = -13845.892473 eV Core-core repulsion = 11512.455970 eV Total energy + Delta-G solvation = -2333.436503 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.78754 -38.40287 -35.85980 -34.88645 -33.15789 -31.15193 -28.06848 -26.60105 -26.46413 -25.02578 -21.75928 -19.74432 -18.74243 -18.41110 -17.29027 -16.83657 -16.43718 -15.52279 -14.91883 -14.74049 -14.42416 -14.23507 -13.83922 -13.52908 -13.15740 -12.78489 -12.61822 -12.49949 -12.17157 -11.99316 -11.87264 -11.53257 -10.95116 -10.63492 -10.22420 -8.78442 -8.25019 -5.60560 -0.40630 -0.22636 1.29323 1.38252 1.56695 2.40204 2.53134 2.73388 2.96808 3.03190 3.14704 3.39342 3.86356 4.16577 4.35989 4.46304 4.55751 4.74163 4.91493 4.96495 5.01986 5.13545 5.30907 5.43081 5.86381 5.90367 6.16281 6.94030 7.49705 7.60677 8.04286 8.93620 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.035324 B = 0.013459 C = 0.011336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.470608 B = 2079.962250 C = 2469.440804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.214 3.786 3 H 0.108 0.892 4 C 0.010 3.990 5 C 0.137 3.863 6 N -0.475 5.475 7 C 0.212 3.788 8 N -0.320 5.320 9 N -0.209 5.209 10 N -0.603 5.603 11 C 0.104 3.896 12 C -0.256 4.256 13 H 0.061 0.939 14 C -0.011 4.011 15 N -0.942 5.942 16 Si 0.937 3.063 17 H -0.288 1.288 18 H -0.319 1.319 19 H -0.256 1.256 20 H 0.065 0.935 21 H 0.043 0.957 22 H 0.089 0.911 23 H 0.227 0.773 24 H 0.240 0.760 25 H 0.018 0.982 26 H 0.079 0.921 27 H 0.017 0.983 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.684 0.165 14.692 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.105 3.895 3 H 0.126 0.874 4 C -0.142 4.142 5 C -0.041 4.041 6 N -0.195 5.195 7 C -0.078 4.078 8 N -0.163 5.163 9 N -0.057 5.057 10 N -0.326 5.326 11 C -0.040 4.040 12 C -0.385 4.385 13 H 0.078 0.922 14 C -0.209 4.209 15 N -0.586 5.586 16 Si 0.768 3.232 17 H -0.216 1.216 18 H -0.249 1.249 19 H -0.180 1.180 20 H 0.084 0.916 21 H 0.062 0.938 22 H 0.108 0.892 23 H 0.243 0.757 24 H 0.256 0.744 25 H 0.037 0.963 26 H 0.097 0.903 27 H 0.036 0.964 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.299 -0.975 14.578 15.911 hybrid contribution 0.769 -0.133 -0.207 0.808 sum -5.529 -1.108 14.371 15.438 Atomic orbital electron populations 1.22093 0.93044 1.01881 1.03266 1.19837 0.94845 0.95209 0.79626 0.87380 1.25245 0.95273 0.93913 0.99753 1.24636 0.89186 1.03280 0.87037 1.69158 1.09632 1.09282 1.31430 1.26956 0.93157 0.89700 0.97967 1.73687 1.11198 1.33237 0.98225 1.73667 1.04398 1.09117 1.18562 1.44127 1.57742 1.09610 1.21109 1.21625 0.96810 0.85212 1.00393 1.18810 1.07183 0.96962 1.15573 0.92158 1.25970 0.97569 1.00646 0.96687 1.69978 1.29360 1.43858 1.15372 0.85999 0.75323 0.80820 0.81063 1.21614 1.24881 1.18018 0.91573 0.93778 0.89239 0.75694 0.74382 0.96346 0.90267 0.96438 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.18 71.98 0.66 -3.20 15 2 C 0.21 7.29 3.01 44.24 0.13 7.42 15 3 H 0.11 3.41 7.87 -2.39 -0.02 3.39 15 4 C 0.01 0.32 5.95 42.63 0.25 0.58 15 5 C 0.14 3.37 11.03 84.73 0.93 4.31 15 6 N -0.48 -12.17 10.54 -199.54 -2.10 -14.28 15 7 C 0.21 5.60 12.39 180.75 2.24 7.84 15 8 N -0.32 -11.11 11.57 -61.23 -0.71 -11.82 15 9 N -0.21 -8.03 7.52 -47.41 -0.36 -8.39 15 10 N -0.60 -27.51 2.31 -706.99 -1.64 -29.14 15 11 C 0.10 4.68 8.16 127.77 1.04 5.72 15 12 C -0.26 -14.02 9.82 84.03 0.83 -13.19 15 13 H 0.06 3.50 8.06 -2.91 -0.02 3.48 15 14 C -0.01 -0.67 5.26 84.86 0.45 -0.22 15 15 N -0.94 -58.91 13.97 21.65 0.30 -58.61 15 16 Si 0.94 49.22 25.09 68.60 1.72 50.94 15 17 H -0.29 -15.01 6.68 99.48 0.66 -14.35 15 18 H -0.32 -17.12 7.11 99.48 0.71 -16.41 15 19 H -0.26 -13.25 6.59 99.48 0.66 -12.59 15 20 H 0.07 1.85 8.14 -2.39 -0.02 1.83 15 21 H 0.04 1.26 7.67 -2.39 -0.02 1.24 15 22 H 0.09 1.69 8.14 -2.39 -0.02 1.67 15 23 H 0.23 3.35 8.06 -2.91 -0.02 3.33 15 24 H 0.24 4.05 8.06 -2.91 -0.02 4.03 15 25 H 0.02 0.78 8.14 -2.39 -0.02 0.76 15 26 H 0.08 3.38 5.13 -2.39 -0.01 3.37 15 27 H 0.02 0.87 3.52 -2.39 -0.01 0.86 15 28 H 0.26 15.69 8.31 -92.71 -0.77 14.92 15 Total: -1.00 -71.34 237.27 4.83 -66.51 By element: Atomic # 1 Polarization: -5.55 SS G_CDS: 1.07 Total: -4.48 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 6.54 Total: 9.27 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -4.50 Total: -122.24 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 1.72 Total: 50.94 kcal Total: -71.34 4.83 -66.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259784939.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.002 kcal (2) G-P(sol) polarization free energy of solvation -71.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds