Wall clock time and date at job start Mon Mar 30 2020 02:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40001 * 126.03255 * 2 1 4 4 C 1.31056 * 108.39056 * 179.81344 * 3 2 1 5 5 C 1.39797 * 108.18741 * 0.44039 * 4 3 2 6 6 C 1.35075 * 126.03002 * 180.29859 * 2 1 3 7 7 O 1.35760 * 126.18364 * 0.02785 * 6 2 1 8 8 C 1.51266 * 109.58235 * 179.73320 * 5 4 3 9 9 H 1.08994 * 110.30100 * 258.18471 * 8 5 4 10 10 C 1.50706 * 110.29643 * 136.14682 * 8 5 4 11 11 H 1.08001 * 119.99926 * 0.02562 * 10 8 5 12 12 C 1.37879 * 120.00082 * 180.02562 * 10 8 5 13 13 N 1.31511 * 120.00174 * 180.02562 * 12 10 8 14 14 Si 1.86800 * 119.99848 * 359.97438 * 12 10 8 15 15 H 1.48499 * 109.47121 * 90.00223 * 14 12 10 16 16 H 1.48503 * 109.46888 * 210.00426 * 14 12 10 17 17 H 1.48503 * 109.47461 * 330.00039 * 14 12 10 18 18 C 1.54347 * 105.20723 * 17.21809 * 8 5 4 19 19 C 1.51337 * 142.30916 * 180.02562 * 4 3 2 20 20 H 1.09002 * 109.47391 * 269.69508 * 1 2 3 21 21 H 1.09001 * 109.46813 * 149.69564 * 1 2 3 22 22 H 1.09004 * 109.47041 * 29.69691 * 1 2 3 23 23 H 0.96701 * 113.99881 * 89.96885 * 7 6 2 24 24 H 0.97000 * 120.00362 * 180.02562 * 13 12 10 25 25 H 1.08996 * 110.77242 * 91.76795 * 18 8 5 26 26 H 1.08996 * 110.77286 * 215.18602 * 18 8 5 27 27 H 1.09000 * 110.29127 * 44.25796 * 19 4 3 28 28 H 1.09004 * 110.29692 * 282.13251 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2885 1.1322 0.0000 4 6 3.5375 0.7350 0.0040 5 6 3.5508 -0.6629 -0.0034 6 6 2.2595 -1.0923 -0.0057 7 8 1.8448 -2.3850 -0.0130 8 6 4.9807 -1.1563 -0.0057 9 1 5.2703 -1.4721 -1.0079 10 6 5.1422 -2.2956 0.9676 11 1 4.2943 -2.6403 1.5408 12 6 6.3723 -2.8978 1.1261 13 7 6.5131 -3.8923 1.9750 14 14 7.8387 -2.3019 0.1341 15 1 8.5430 -1.2321 0.8855 16 1 8.7690 -3.4349 -0.1033 17 1 7.3698 -1.7652 -1.1688 18 6 5.8273 0.0542 0.4420 19 6 4.9591 1.2538 0.0072 20 1 -0.3634 -0.0055 1.0276 21 1 -0.3633 -0.8873 -0.5186 22 1 -0.3633 0.8927 -0.5091 23 1 1.7246 -2.7545 -0.8985 24 1 7.3786 -4.3157 2.0869 25 1 5.9669 0.0498 1.5230 26 1 6.7880 0.0656 -0.0728 27 1 5.0612 2.0723 0.7198 28 1 5.2434 1.5838 -0.9920 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259802592.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:43 Heat of formation + Delta-G solvation = 49.844046 kcal Electronic energy + Delta-G solvation = -13692.569373 eV Core-core repulsion = 11325.207710 eV Total energy + Delta-G solvation = -2367.361663 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.99230 -36.90577 -35.88163 -32.52536 -31.34035 -29.23016 -27.16549 -25.76243 -23.12122 -21.22721 -19.54480 -19.24070 -17.35887 -16.67757 -15.65011 -14.97588 -14.37983 -14.21524 -13.75611 -13.22267 -12.57262 -12.38513 -12.26208 -12.07249 -11.65215 -11.54499 -10.76641 -10.75322 -10.22302 -10.08693 -9.79891 -9.33901 -9.06455 -8.52563 -8.48494 -7.44154 -5.98028 -3.95787 2.23755 2.73648 3.30964 3.35166 3.41095 3.42362 4.42829 4.47701 4.72486 5.18627 5.32226 5.34629 5.53089 5.63435 5.86831 6.03343 6.16344 6.35942 6.55003 6.69097 6.86320 6.97482 7.15314 7.20835 7.47748 7.80971 8.13255 8.25743 8.66099 9.11543 9.63495 11.15621 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.042381 B = 0.011653 C = 0.009647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.516572 B = 2402.285754 C = 2901.661610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.395 5.395 3 N -0.280 5.280 4 C 0.049 3.951 5 C -0.205 4.205 6 C 0.254 3.746 7 O -0.456 6.456 8 C 0.085 3.915 9 H 0.040 0.960 10 C -0.499 4.499 11 H 0.076 0.924 12 C 0.069 3.931 13 N -0.903 5.903 14 Si 0.874 3.126 15 H -0.275 1.275 16 H -0.294 1.294 17 H -0.264 1.264 18 C -0.126 4.126 19 C -0.027 4.027 20 H 0.068 0.932 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.386 0.614 24 H 0.262 0.738 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.202 7.311 -6.566 12.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.189 5.189 3 N -0.106 5.106 4 C -0.116 4.116 5 C -0.216 4.216 6 C 0.088 3.912 7 O -0.257 6.257 8 C 0.065 3.935 9 H 0.058 0.942 10 C -0.537 4.537 11 H 0.094 0.906 12 C -0.132 4.132 13 N -0.542 5.542 14 Si 0.702 3.298 15 H -0.201 1.201 16 H -0.220 1.220 17 H -0.189 1.189 18 C -0.165 4.165 19 C -0.067 4.067 20 H 0.086 0.914 21 H 0.098 0.902 22 H 0.102 0.898 23 H 0.240 0.760 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.999 8.083 -5.873 12.798 hybrid contribution 1.013 -0.701 -0.867 1.506 sum -6.985 7.382 -6.740 12.195 Atomic orbital electron populations 1.21614 0.75185 1.03427 1.02881 1.48827 1.06042 1.03288 1.60781 1.77001 1.00591 1.05248 1.27792 1.23168 0.93740 0.95655 0.99053 1.20976 0.94885 0.94442 1.11345 1.17812 0.88075 0.80141 1.05144 1.84954 1.88651 1.19415 1.32679 1.18200 0.84426 0.93528 0.97299 0.94245 1.21026 0.96809 1.13893 1.21938 0.90579 1.25001 0.98527 0.94720 0.94962 1.69907 1.24345 1.23879 1.36085 0.86989 0.83063 0.78176 0.81538 1.20096 1.22036 1.18866 1.22852 0.97222 0.94256 1.02121 1.20572 0.85651 0.98869 1.01579 0.91367 0.90194 0.89841 0.75951 0.92810 0.90287 0.92118 0.90980 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.38 11.42 59.85 0.68 2.06 15 2 N -0.39 -7.24 4.01 -68.26 -0.27 -7.52 15 3 N -0.28 -5.62 12.57 33.85 0.43 -5.19 15 4 C 0.05 1.02 8.10 -82.03 -0.66 0.36 15 5 C -0.20 -4.65 6.15 -104.54 -0.64 -5.29 15 6 C 0.25 5.24 7.98 -16.90 -0.13 5.10 15 7 O -0.46 -8.54 13.57 -18.99 -0.26 -8.80 15 8 C 0.09 2.05 2.31 -91.94 -0.21 1.84 15 9 H 0.04 0.96 7.09 -51.93 -0.37 0.59 15 10 C -0.50 -14.29 9.01 -34.44 -0.31 -14.60 15 11 H 0.08 2.46 8.01 -52.49 -0.42 2.04 15 12 C 0.07 1.98 5.46 -17.82 -0.10 1.88 15 13 N -0.90 -27.92 13.96 55.43 0.77 -27.14 15 14 Si 0.87 21.21 24.76 -169.99 -4.21 17.00 15 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 16 H -0.29 -7.19 7.11 56.52 0.40 -6.78 15 17 H -0.26 -6.03 6.41 56.52 0.36 -5.67 15 18 C -0.13 -2.66 5.07 -25.33 -0.13 -2.79 15 19 C -0.03 -0.49 6.76 -26.87 -0.18 -0.67 15 20 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.08 0.80 8.13 -51.93 -0.42 0.38 15 22 H 0.08 0.88 8.14 -51.93 -0.42 0.45 15 23 H 0.39 5.04 9.06 45.56 0.41 5.46 15 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 25 H 0.08 1.75 7.91 -51.93 -0.41 1.34 15 26 H 0.06 1.20 5.86 -51.93 -0.30 0.90 15 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 LS Contribution 238.70 15.07 3.60 3.60 Total: -1.00 -34.35 238.70 -4.01 -38.36 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -2.38 Total: 1.80 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -1.69 Total: -12.10 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.93 Total: -39.86 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.26 Total: -8.80 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.21 Total: 17.00 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -34.35 -4.01 -38.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802592.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.204 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds