Wall clock time and date at job start Mon Mar 30 2020 02:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40001 * 126.03255 * 2 1 4 4 C 1.31056 * 108.39056 * 179.81344 * 3 2 1 5 5 C 1.39797 * 108.18741 * 0.44039 * 4 3 2 6 6 C 1.35075 * 126.03002 * 180.29859 * 2 1 3 7 7 O 1.35760 * 126.18364 * 0.02785 * 6 2 1 8 8 C 1.51266 * 109.58235 * 179.73320 * 5 4 3 9 9 H 1.08994 * 110.30100 * 258.18471 * 8 5 4 10 10 C 1.50706 * 110.29643 * 136.14682 * 8 5 4 11 11 H 1.08001 * 119.99926 * 0.02562 * 10 8 5 12 12 C 1.37879 * 120.00082 * 180.02562 * 10 8 5 13 13 N 1.31511 * 120.00174 * 180.02562 * 12 10 8 14 14 Si 1.86800 * 119.99848 * 359.97438 * 12 10 8 15 15 H 1.48499 * 109.47121 * 90.00223 * 14 12 10 16 16 H 1.48503 * 109.46888 * 210.00426 * 14 12 10 17 17 H 1.48503 * 109.47461 * 330.00039 * 14 12 10 18 18 C 1.54347 * 105.20723 * 17.21809 * 8 5 4 19 19 C 1.51337 * 142.30916 * 180.02562 * 4 3 2 20 20 H 1.09002 * 109.47391 * 269.69508 * 1 2 3 21 21 H 1.09001 * 109.46813 * 149.69564 * 1 2 3 22 22 H 1.09004 * 109.47041 * 29.69691 * 1 2 3 23 23 H 0.96701 * 113.99881 * 89.96885 * 7 6 2 24 24 H 0.97000 * 120.00362 * 180.02562 * 13 12 10 25 25 H 1.08996 * 110.77242 * 91.76795 * 18 8 5 26 26 H 1.08996 * 110.77286 * 215.18602 * 18 8 5 27 27 H 1.09000 * 110.29127 * 44.25796 * 19 4 3 28 28 H 1.09004 * 110.29692 * 282.13251 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2885 1.1322 0.0000 4 6 3.5375 0.7350 0.0040 5 6 3.5508 -0.6629 -0.0034 6 6 2.2595 -1.0923 -0.0057 7 8 1.8448 -2.3850 -0.0130 8 6 4.9807 -1.1563 -0.0057 9 1 5.2703 -1.4721 -1.0079 10 6 5.1422 -2.2956 0.9676 11 1 4.2943 -2.6403 1.5408 12 6 6.3723 -2.8978 1.1261 13 7 6.5131 -3.8923 1.9750 14 14 7.8387 -2.3019 0.1341 15 1 8.5430 -1.2321 0.8855 16 1 8.7690 -3.4349 -0.1033 17 1 7.3698 -1.7652 -1.1688 18 6 5.8273 0.0542 0.4420 19 6 4.9591 1.2538 0.0072 20 1 -0.3634 -0.0055 1.0276 21 1 -0.3633 -0.8873 -0.5186 22 1 -0.3633 0.8927 -0.5091 23 1 1.7246 -2.7545 -0.8985 24 1 7.3786 -4.3157 2.0869 25 1 5.9669 0.0498 1.5230 26 1 6.7880 0.0656 -0.0728 27 1 5.0612 2.0723 0.7198 28 1 5.2434 1.5838 -0.9920 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259802592.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:43 Heat of formation + Delta-G solvation = 22.038238 kcal Electronic energy + Delta-G solvation = -13693.775123 eV Core-core repulsion = 11325.207710 eV Total energy + Delta-G solvation = -2368.567413 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.50592 -38.44131 -37.47123 -34.52375 -32.85305 -30.83619 -28.93714 -27.08553 -25.03514 -22.74150 -21.22100 -20.75834 -18.94837 -18.67745 -17.10283 -16.55469 -16.15175 -15.82340 -15.14323 -14.94649 -14.26111 -13.92046 -13.59283 -13.38487 -13.24332 -13.14023 -12.61476 -12.50491 -11.92598 -11.77407 -11.53394 -11.15354 -10.98675 -10.65285 -9.96997 -9.05267 -8.20137 -6.24056 0.73832 1.38395 1.41591 1.45304 1.55540 1.75657 2.43081 3.00051 3.16122 3.33700 4.08025 4.20639 4.36996 4.41581 4.54917 4.60485 4.61867 4.83661 5.04216 5.10104 5.28143 5.31020 5.55241 5.69876 5.74255 5.87140 6.43432 6.70542 6.78561 6.82953 7.39798 8.97664 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.042381 B = 0.011653 C = 0.009647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.516572 B = 2402.285754 C = 2901.661610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.387 5.387 3 N -0.289 5.289 4 C 0.045 3.955 5 C -0.259 4.259 6 C 0.255 3.745 7 O -0.469 6.469 8 C 0.085 3.915 9 H 0.039 0.961 10 C -0.504 4.504 11 H 0.018 0.982 12 C 0.007 3.993 13 N -0.958 5.958 14 Si 0.945 3.055 15 H -0.255 1.255 16 H -0.297 1.297 17 H -0.236 1.236 18 C -0.124 4.124 19 C -0.019 4.019 20 H 0.076 0.924 21 H 0.105 0.895 22 H 0.107 0.893 23 H 0.410 0.590 24 H 0.264 0.736 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.074 9.379 -8.286 14.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.181 5.181 3 N -0.115 5.115 4 C -0.120 4.120 5 C -0.271 4.271 6 C 0.087 3.913 7 O -0.274 6.274 8 C 0.065 3.935 9 H 0.057 0.943 10 C -0.542 4.542 11 H 0.036 0.964 12 C -0.189 4.189 13 N -0.599 5.599 14 Si 0.768 3.232 15 H -0.180 1.180 16 H -0.224 1.224 17 H -0.159 1.159 18 C -0.162 4.162 19 C -0.058 4.058 20 H 0.095 0.905 21 H 0.123 0.877 22 H 0.125 0.875 23 H 0.268 0.732 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.921 10.178 -7.616 14.977 hybrid contribution 0.752 -1.462 -0.271 1.666 sum -7.168 8.716 -7.887 13.768 Atomic orbital electron populations 1.22099 0.71901 1.05937 1.04231 1.49187 1.07778 1.02093 1.59084 1.76937 1.00504 1.05961 1.28126 1.23564 0.94921 0.94770 0.98700 1.21116 0.95096 0.95995 1.14917 1.17972 0.88370 0.81000 1.03974 1.84879 1.88539 1.19053 1.34967 1.18113 0.86730 0.93035 0.95639 0.94309 1.21195 0.95130 1.15628 1.22211 0.96396 1.25976 1.02137 0.94612 0.96164 1.70091 1.25389 1.25904 1.38559 0.85859 0.78279 0.78028 0.81001 1.17953 1.22422 1.15883 1.22708 0.98154 0.94267 1.01117 1.20610 0.83248 0.97848 1.04065 0.90537 0.87653 0.87483 0.73164 0.92727 0.92280 0.90225 0.88523 0.87079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.17 11.42 127.77 1.46 3.63 15 2 N -0.39 -13.54 4.01 -481.22 -1.93 -15.47 15 3 N -0.29 -10.99 12.57 -46.82 -0.59 -11.58 15 4 C 0.05 1.80 8.10 43.25 0.35 2.15 15 5 C -0.26 -11.68 6.15 -19.81 -0.12 -11.80 15 6 C 0.25 10.40 7.98 83.69 0.67 11.06 15 7 O -0.47 -17.63 13.57 -90.86 -1.23 -18.86 15 8 C 0.08 4.05 2.31 -11.65 -0.03 4.02 15 9 H 0.04 1.83 7.09 -2.39 -0.02 1.82 15 10 C -0.50 -29.87 9.01 25.60 0.23 -29.64 15 11 H 0.02 1.22 8.01 -2.91 -0.02 1.20 15 12 C 0.01 0.40 5.46 84.66 0.46 0.86 15 13 N -0.96 -61.44 13.96 21.45 0.30 -61.14 15 14 Si 0.94 43.26 24.76 68.60 1.70 44.96 15 15 H -0.25 -10.82 7.11 99.48 0.71 -10.12 15 16 H -0.30 -13.71 7.11 99.48 0.71 -13.00 15 17 H -0.24 -9.66 6.41 99.48 0.64 -9.02 15 18 C -0.12 -4.98 5.07 31.50 0.16 -4.82 15 19 C -0.02 -0.61 6.76 30.50 0.21 -0.41 15 20 H 0.08 1.61 8.14 -2.39 -0.02 1.59 15 21 H 0.11 1.81 8.13 -2.39 -0.02 1.79 15 22 H 0.11 1.90 8.14 -2.38 -0.02 1.88 15 23 H 0.41 10.49 9.06 -74.06 -0.67 9.82 15 24 H 0.26 15.76 8.31 -92.71 -0.77 14.99 15 25 H 0.06 2.57 7.91 -2.39 -0.02 2.55 15 26 H 0.08 2.85 5.86 -2.39 -0.01 2.84 15 27 H 0.10 2.70 8.14 -2.39 -0.02 2.68 15 28 H 0.11 2.93 8.14 -2.39 -0.02 2.91 15 Total: -1.00 -77.18 238.70 2.07 -75.11 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.44 Total: 11.92 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 3.39 Total: -24.94 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -2.22 Total: -88.19 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -1.23 Total: -18.86 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.70 Total: 44.96 kcal Total: -77.18 2.07 -75.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802592.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.147 kcal (2) G-P(sol) polarization free energy of solvation -77.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds