Wall clock time and date at job start Mon Mar 30 2020 02:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42893 * 114.00216 * 2 1 4 4 C 1.50702 * 109.47309 * 179.97438 * 3 2 1 5 5 C 1.38387 * 120.00165 * 0.02562 * 4 3 2 6 6 N 1.32118 * 120.00091 * 179.97438 * 5 4 3 7 7 C 1.32154 * 119.99692 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99920 * 179.72668 * 7 6 5 9 9 C 1.50703 * 109.47225 * 305.00404 * 8 7 6 10 10 H 1.08003 * 119.99621 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00401 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99845 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00369 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47119 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47508 * 120.00024 * 13 11 9 16 16 H 1.48504 * 109.47076 * 239.99650 * 13 11 9 17 17 C 1.38342 * 120.00353 * 0.02562 * 7 6 5 18 18 N 1.32124 * 120.00069 * 179.97438 * 4 3 2 19 19 H 1.09005 * 109.47362 * 299.99889 * 1 2 3 20 20 H 1.09004 * 109.47353 * 59.99778 * 1 2 3 21 21 H 1.09007 * 109.47244 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46816 * 60.00161 * 3 2 1 23 23 H 1.08999 * 109.47133 * 300.00101 * 3 2 1 24 24 H 1.08001 * 119.99856 * 359.97438 * 5 4 3 25 25 H 1.09009 * 109.47095 * 64.99754 * 8 7 6 26 26 H 1.08997 * 109.47591 * 185.00166 * 8 7 6 27 27 H 0.96998 * 120.00443 * 180.02562 * 12 11 9 28 28 H 1.08001 * 119.99992 * 179.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1077 -0.0630 0.0006 6 7 5.4247 -0.1673 0.0006 7 6 6.1738 0.9215 0.0002 8 6 7.6761 0.8026 0.0065 9 6 8.1080 -0.0460 1.1746 10 1 7.3685 -0.4576 1.8456 11 6 9.4470 -0.2959 1.3874 12 7 10.3475 0.2057 0.5706 13 14 9.9824 -1.3471 2.8357 14 1 8.7858 -1.7870 3.5972 15 1 10.7183 -2.5373 2.3384 16 1 10.8689 -0.5523 3.7233 17 6 5.5788 2.1705 0.0003 18 7 4.2614 2.2749 0.0002 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6886 1.8463 0.8900 23 1 1.6886 1.8463 -0.8900 24 1 3.4955 -0.9527 0.0005 25 1 8.0077 0.3380 -0.9222 26 1 8.1188 1.7947 0.0948 27 1 11.2896 0.0296 0.7200 28 1 6.1910 3.0602 0.0004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259821589.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:36 Heat of formation + Delta-G solvation = -6.416259 kcal Electronic energy + Delta-G solvation = -12841.307648 eV Core-core repulsion = 10471.506355 eV Total energy + Delta-G solvation = -2369.801293 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.51737 -37.90932 -34.30464 -33.03282 -31.85673 -29.25248 -26.83639 -25.45778 -24.05860 -23.08091 -20.98333 -17.41116 -16.47399 -16.29774 -16.05628 -15.64952 -15.14364 -14.43298 -14.17248 -14.07491 -12.75068 -12.49034 -12.17875 -11.79121 -11.53775 -11.49974 -10.95206 -10.82832 -10.69421 -10.44267 -9.92728 -9.90445 -9.44796 -8.53898 -8.27583 -8.21652 -6.06165 -4.07590 1.42769 1.77190 3.31344 3.38636 3.40626 3.44898 4.28282 4.47606 4.64963 4.99177 5.06353 5.14556 5.15139 5.27992 5.31272 5.41877 5.43673 5.49336 5.96612 6.03685 6.19751 6.93834 7.06840 7.37627 7.44337 7.86876 7.93139 8.23595 8.57222 8.95408 9.55351 11.04921 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.054529 B = 0.006648 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.365938 B = 4210.489022 C = 4550.461665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.389 6.389 3 C 0.129 3.871 4 C 0.026 3.974 5 C 0.075 3.925 6 N -0.431 5.431 7 C 0.130 3.870 8 C 0.061 3.939 9 C -0.503 4.503 10 H 0.060 0.940 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.899 3.101 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.035 3.965 18 N -0.440 5.440 19 H 0.042 0.958 20 H 0.042 0.958 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.166 0.834 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.262 0.738 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.556 2.125 -1.386 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.307 6.307 3 C 0.051 3.949 4 C -0.114 4.114 5 C -0.086 4.086 6 N -0.145 5.145 7 C -0.010 4.010 8 C 0.023 3.977 9 C -0.541 4.541 10 H 0.078 0.922 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.726 3.274 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.126 4.126 18 N -0.156 5.156 19 H 0.061 0.939 20 H 0.061 0.939 21 H 0.106 0.894 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.183 0.817 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.270 1.953 -1.416 15.459 hybrid contribution 0.152 -0.298 0.779 0.847 sum -15.118 1.656 -0.637 15.221 Atomic orbital electron populations 1.22744 0.80423 1.02955 1.00078 1.87809 1.19987 1.27369 1.95530 1.20751 0.88177 0.84562 1.01383 1.21517 0.95706 0.91197 1.02945 1.23578 0.91916 0.98090 0.94975 1.68566 1.04550 1.32741 1.08667 1.23342 1.00622 0.88396 0.88595 1.18351 0.81198 0.99070 0.99097 1.20999 0.91920 1.30898 1.10317 0.92184 1.24980 0.96569 0.96082 0.96774 1.69952 1.01193 1.45124 1.37287 0.86418 0.78580 0.80103 0.82253 1.19714 1.20873 1.20996 1.23576 0.90219 0.99224 0.99536 1.67840 1.06700 1.31788 1.09304 0.93916 0.93943 0.89352 0.91406 0.91429 0.81685 0.93549 0.94028 0.92833 0.81568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 15 2 O -0.39 -4.88 9.18 -35.23 -0.32 -5.21 15 3 C 0.13 1.68 6.49 36.01 0.23 1.91 15 4 C 0.03 0.46 6.79 -82.41 -0.56 -0.10 15 5 C 0.07 1.42 10.56 -17.37 -0.18 1.23 15 6 N -0.43 -9.72 10.14 -9.29 -0.09 -9.82 15 7 C 0.13 2.93 6.12 -82.41 -0.50 2.43 15 8 C 0.06 1.55 5.39 -29.03 -0.16 1.40 15 9 C -0.50 -14.26 8.92 -34.44 -0.31 -14.57 15 10 H 0.06 1.74 7.69 -52.48 -0.40 1.33 15 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 12 N -0.90 -26.29 13.29 55.43 0.74 -25.55 15 13 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 15 14 H -0.27 -6.61 7.11 56.52 0.40 -6.20 15 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 17 C 0.04 0.69 10.85 -17.38 -0.19 0.50 15 18 N -0.44 -8.16 10.42 -9.29 -0.10 -8.26 15 19 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 15 20 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 15 21 H 0.09 0.61 8.14 -51.93 -0.42 0.19 15 22 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.17 2.76 7.01 -52.49 -0.37 2.39 15 25 H 0.05 1.26 8.14 -51.92 -0.42 0.84 15 26 H 0.04 1.05 7.89 -51.93 -0.41 0.64 15 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 28 H 0.17 2.82 7.95 -52.49 -0.42 2.40 15 LS Contribution 253.17 15.07 3.82 3.82 Total: -1.00 -31.32 253.17 -4.90 -36.22 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: -3.27 Total: -3.77 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -0.65 Total: -4.28 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.55 Total: -43.63 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.32 Total: -5.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.32 -4.90 -36.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259821589.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.805 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds