Wall clock time and date at job start Mon Mar 30 2020 02:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42893 * 114.00216 * 2 1 4 4 C 1.50702 * 109.47309 * 179.97438 * 3 2 1 5 5 C 1.38387 * 120.00165 * 0.02562 * 4 3 2 6 6 N 1.32118 * 120.00091 * 179.97438 * 5 4 3 7 7 C 1.32154 * 119.99692 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99920 * 179.72668 * 7 6 5 9 9 C 1.50703 * 109.47225 * 305.00404 * 8 7 6 10 10 H 1.08003 * 119.99621 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00401 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99845 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00369 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47119 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47508 * 120.00024 * 13 11 9 16 16 H 1.48504 * 109.47076 * 239.99650 * 13 11 9 17 17 C 1.38342 * 120.00353 * 0.02562 * 7 6 5 18 18 N 1.32124 * 120.00069 * 179.97438 * 4 3 2 19 19 H 1.09005 * 109.47362 * 299.99889 * 1 2 3 20 20 H 1.09004 * 109.47353 * 59.99778 * 1 2 3 21 21 H 1.09007 * 109.47244 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46816 * 60.00161 * 3 2 1 23 23 H 1.08999 * 109.47133 * 300.00101 * 3 2 1 24 24 H 1.08001 * 119.99856 * 359.97438 * 5 4 3 25 25 H 1.09009 * 109.47095 * 64.99754 * 8 7 6 26 26 H 1.08997 * 109.47591 * 185.00166 * 8 7 6 27 27 H 0.96998 * 120.00443 * 180.02562 * 12 11 9 28 28 H 1.08001 * 119.99992 * 179.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1077 -0.0630 0.0006 6 7 5.4247 -0.1673 0.0006 7 6 6.1738 0.9215 0.0002 8 6 7.6761 0.8026 0.0065 9 6 8.1080 -0.0460 1.1746 10 1 7.3685 -0.4576 1.8456 11 6 9.4470 -0.2959 1.3874 12 7 10.3475 0.2057 0.5706 13 14 9.9824 -1.3471 2.8357 14 1 8.7858 -1.7870 3.5972 15 1 10.7183 -2.5373 2.3384 16 1 10.8689 -0.5523 3.7233 17 6 5.5788 2.1705 0.0003 18 7 4.2614 2.2749 0.0002 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6886 1.8463 0.8900 23 1 1.6886 1.8463 -0.8900 24 1 3.4955 -0.9527 0.0005 25 1 8.0077 0.3380 -0.9222 26 1 8.1188 1.7947 0.0948 27 1 11.2896 0.0296 0.7200 28 1 6.1910 3.0602 0.0004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259821589.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:35 Heat of formation + Delta-G solvation = -28.624172 kcal Electronic energy + Delta-G solvation = -12842.270656 eV Core-core repulsion = 10471.506355 eV Total energy + Delta-G solvation = -2370.764300 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.03966 -38.84156 -36.03062 -34.88153 -33.51103 -30.83968 -28.08700 -26.68576 -25.61884 -24.75934 -22.64469 -18.95892 -18.27637 -17.72812 -17.00042 -16.95647 -16.64595 -16.14502 -15.61877 -15.35901 -14.36322 -13.97124 -13.65372 -13.32697 -13.24129 -12.70459 -12.69151 -12.47060 -12.28799 -12.06911 -11.88655 -11.54129 -10.79284 -10.63630 -9.87018 -9.81538 -8.22698 -6.31967 -0.10301 0.22185 1.39231 1.40324 1.53471 2.39185 2.41294 2.77726 3.10353 3.31297 3.56844 3.72329 3.91634 4.20461 4.40468 4.42682 4.54401 4.60001 4.65038 4.72128 4.93833 5.23514 5.36427 5.51528 5.70559 6.10995 6.14284 6.39412 6.75493 6.98952 7.34922 8.88499 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.054529 B = 0.006648 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.365938 B = 4210.489022 C = 4550.461665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.134 3.866 4 C 0.043 3.957 5 C 0.066 3.934 6 N -0.463 5.463 7 C 0.097 3.903 8 C 0.070 3.930 9 C -0.521 4.521 10 H 0.048 0.952 11 C 0.008 3.992 12 N -0.926 5.926 13 Si 0.965 3.035 14 H -0.272 1.272 15 H -0.276 1.276 16 H -0.272 1.272 17 C 0.042 3.958 18 N -0.440 5.440 19 H 0.055 0.945 20 H 0.057 0.943 21 H 0.100 0.900 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.185 0.815 25 H 0.017 0.983 26 H 0.037 0.963 27 H 0.267 0.733 28 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.460 2.273 -0.699 17.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C 0.056 3.944 4 C -0.098 4.098 5 C -0.095 4.095 6 N -0.178 5.178 7 C -0.041 4.041 8 C 0.032 3.968 9 C -0.560 4.560 10 H 0.066 0.934 11 C -0.191 4.191 12 N -0.567 5.567 13 Si 0.790 3.210 14 H -0.197 1.197 15 H -0.201 1.201 16 H -0.198 1.198 17 C -0.117 4.117 18 N -0.156 5.156 19 H 0.074 0.926 20 H 0.075 0.925 21 H 0.119 0.881 22 H 0.105 0.895 23 H 0.108 0.892 24 H 0.202 0.798 25 H 0.035 0.965 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -17.172 2.118 -0.733 17.318 hybrid contribution 0.565 -0.359 0.527 0.852 sum -16.607 1.759 -0.206 16.701 Atomic orbital electron populations 1.22993 0.78089 1.04299 1.01420 1.87773 1.22427 1.27005 1.95786 1.20819 0.84910 0.85428 1.03229 1.22271 0.98126 0.90189 0.99235 1.23921 0.90694 0.99806 0.95052 1.68375 1.06503 1.33571 1.09378 1.22876 0.99110 0.89871 0.92261 1.18047 0.83921 0.97908 0.96948 1.21233 0.92112 1.31497 1.11120 0.93417 1.25815 0.96553 0.97236 0.99470 1.70046 1.01621 1.46153 1.38831 0.85399 0.78122 0.78549 0.78965 1.19678 1.20149 1.19760 1.23737 0.91014 0.98672 0.98300 1.68014 1.05970 1.31966 1.09657 0.92642 0.92487 0.88138 0.89517 0.89242 0.79782 0.96483 0.94491 0.92418 0.79501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 15 2 O -0.41 -9.05 9.18 -148.98 -1.37 -10.42 15 3 C 0.13 3.02 6.49 71.24 0.46 3.48 15 4 C 0.04 1.40 6.79 42.55 0.29 1.69 15 5 C 0.07 2.44 10.56 84.69 0.89 3.33 15 6 N -0.46 -21.17 10.14 -183.30 -1.86 -23.03 15 7 C 0.10 4.49 6.12 42.54 0.26 4.75 15 8 C 0.07 3.72 5.39 29.10 0.16 3.87 15 9 C -0.52 -30.36 8.92 25.60 0.23 -30.13 15 10 H 0.05 2.83 7.69 -2.91 -0.02 2.81 15 11 C 0.01 0.44 5.46 84.65 0.46 0.90 15 12 N -0.93 -55.23 13.29 21.45 0.28 -54.94 15 13 Si 0.96 45.14 29.54 68.60 2.03 47.17 15 14 H -0.27 -12.60 7.11 99.48 0.71 -11.89 15 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 17 C 0.04 1.63 10.85 84.67 0.92 2.55 15 18 N -0.44 -15.51 10.42 -183.30 -1.91 -17.42 15 19 H 0.05 0.60 8.14 -2.38 -0.02 0.58 15 20 H 0.06 0.60 8.14 -2.39 -0.02 0.58 15 21 H 0.10 1.08 8.14 -2.38 -0.02 1.06 15 22 H 0.09 1.70 8.14 -2.39 -0.02 1.68 15 23 H 0.09 1.70 8.14 -2.39 -0.02 1.68 15 24 H 0.19 5.91 7.01 -2.91 -0.02 5.89 15 25 H 0.02 0.99 8.14 -2.38 -0.02 0.97 15 26 H 0.04 1.95 7.89 -2.39 -0.02 1.93 15 27 H 0.27 14.86 8.31 -92.71 -0.77 14.09 15 28 H 0.19 6.22 7.95 -2.91 -0.02 6.20 15 Total: -1.00 -67.56 253.17 3.24 -64.32 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 1.15 Total: 2.27 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 4.92 Total: -7.95 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -3.48 Total: -95.39 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -1.37 Total: -10.42 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -67.56 3.24 -64.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259821589.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.697 kcal (2) G-P(sol) polarization free energy of solvation -67.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds