Wall clock time and date at job start Mon Mar 30 2020 02:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31242 * 1 3 3 Si 1.86803 * 119.99491 * 2 1 4 4 H 1.48494 * 109.47421 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47006 * 120.00125 * 3 2 1 6 6 H 1.48504 * 109.46720 * 239.99906 * 3 2 1 7 7 C 1.39017 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00273 * 2.80632 * 7 2 1 9 9 N 1.37610 * 120.00009 * 182.80372 * 7 2 1 10 10 N 1.40617 * 127.42770 * 6.52397 * 9 7 2 11 11 N 1.28932 * 106.67650 * 179.97438 * 10 9 7 12 12 N 1.28410 * 110.31475 * 0.02562 * 11 10 9 13 13 C 1.30735 * 110.67974 * 359.74221 * 12 11 10 14 14 C 1.50697 * 126.40899 * 180.28444 * 13 12 11 15 15 C 1.54267 * 110.03279 * 58.05634 * 14 13 12 16 16 C 1.54962 * 104.16096 * 217.13545 * 15 14 13 17 17 C 1.54889 * 102.77567 * 37.89142 * 16 15 14 18 18 C 1.53873 * 110.03187 * 300.84054 * 14 13 12 19 19 H 0.97002 * 119.99411 * 174.78897 * 1 2 3 20 20 H 1.09001 * 110.01740 * 179.44604 * 14 13 12 21 21 H 1.08997 * 110.48489 * 335.78677 * 15 14 13 22 22 H 1.09005 * 110.48390 * 98.42580 * 15 14 13 23 23 H 1.08991 * 110.72036 * 279.57400 * 16 15 14 24 24 H 1.08998 * 110.76223 * 156.21969 * 16 15 14 25 25 H 1.08996 * 110.48637 * 203.40303 * 17 16 15 26 26 H 1.09000 * 110.60451 * 80.81726 * 17 16 15 27 27 H 1.08997 * 110.03025 * 238.56924 * 18 14 13 28 28 H 1.09004 * 110.03271 * 359.94913 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2463 1.6178 0.0000 4 1 1.2813 2.7465 -0.0006 5 1 3.1000 1.6965 1.2125 6 1 3.1000 1.6965 -1.2125 7 6 2.0075 -1.2039 0.0005 8 1 1.4686 -2.1387 -0.0448 9 7 3.3824 -1.2045 0.0588 10 7 4.2303 -0.0989 0.2484 11 7 5.4373 -0.5520 0.2373 12 7 5.4344 -1.8238 0.0603 13 6 4.2111 -2.2720 -0.0490 14 6 3.7994 -3.7065 -0.2582 15 6 4.3431 -4.5848 0.8876 16 6 4.7334 -5.9143 0.1937 17 6 5.3157 -5.4362 -1.1597 18 6 4.4171 -4.2477 -1.5594 19 1 -0.4849 -0.8366 -0.0763 20 1 2.7128 -3.7802 -0.3018 21 1 5.2184 -4.1204 1.3418 22 1 3.5697 -4.7569 1.6362 23 1 3.8547 -6.5398 0.0368 24 1 5.4886 -6.4454 0.7730 25 1 5.2520 -6.2299 -1.9040 26 1 6.3486 -5.1098 -1.0389 27 1 3.6303 -4.5849 -2.2342 28 1 5.0139 -3.4725 -2.0401 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259893503.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:11 Heat of formation + Delta-G solvation = 59.306114 kcal Electronic energy + Delta-G solvation = -13712.537049 eV Core-core repulsion = 11377.878443 eV Total energy + Delta-G solvation = -2334.658606 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.47312 -38.93498 -36.80298 -34.33583 -32.95182 -29.59144 -29.53436 -27.68800 -24.39384 -23.28259 -21.47670 -20.72741 -20.52576 -18.15441 -17.09810 -16.69576 -16.43977 -15.82755 -15.53034 -14.72899 -14.22468 -14.04795 -13.42762 -13.03299 -12.74951 -12.42067 -12.25749 -12.18062 -12.10281 -11.97112 -11.89209 -11.58911 -11.41166 -11.13406 -10.83409 -10.55827 -9.67469 -7.04080 0.42272 1.38117 1.48137 1.63309 1.71684 1.89025 2.14522 2.59444 3.39110 3.69226 3.75898 4.02021 4.18013 4.45198 4.54153 4.62248 4.63526 4.86645 4.90675 4.98925 5.07569 5.11406 5.12451 5.28676 5.30981 5.42491 5.54417 5.66022 6.03936 6.53362 7.78650 8.02928 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.045591 B = 0.011026 C = 0.009604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.003238 B = 2538.857549 C = 2914.632594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.028 3.972 3 Si 1.119 2.881 4 H -0.280 1.280 5 H -0.275 1.275 6 H -0.290 1.290 7 C -0.368 4.368 8 H 0.138 0.862 9 N -0.182 5.182 10 N -0.232 5.232 11 N -0.128 5.128 12 N -0.339 5.339 13 C 0.107 3.893 14 C 0.005 3.995 15 C -0.112 4.112 16 C -0.110 4.110 17 C -0.115 4.115 18 C -0.109 4.109 19 H 0.294 0.706 20 H 0.089 0.911 21 H 0.054 0.946 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.125 -10.995 -1.529 11.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.191 4.191 3 Si 0.946 3.054 4 H -0.207 1.207 5 H -0.202 1.202 6 H -0.217 1.217 7 C -0.507 4.507 8 H 0.155 0.845 9 N 0.039 4.961 10 N -0.217 5.217 11 N -0.119 5.119 12 N -0.202 5.202 13 C -0.161 4.161 14 C -0.017 4.017 15 C -0.151 4.151 16 C -0.147 4.147 17 C -0.152 4.152 18 C -0.148 4.148 19 H 0.106 0.894 20 H 0.107 0.893 21 H 0.073 0.927 22 H 0.091 0.909 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.899 -8.368 -1.275 8.948 hybrid contribution -0.862 -1.727 -0.108 1.933 sum 2.037 -10.095 -1.383 10.391 Atomic orbital electron populations 1.70842 1.06140 1.33102 1.33450 1.27426 0.96121 1.04925 0.90614 0.82646 0.72019 0.71311 0.79385 1.20716 1.20175 1.21738 1.21713 0.76306 0.99396 1.53310 0.84451 1.47949 1.08416 1.05302 1.34419 1.81481 0.95903 1.09527 1.34808 1.77500 1.13239 1.03913 1.17207 1.73704 1.20177 1.03320 1.22977 1.25491 0.85711 0.94371 1.10515 1.20335 1.00597 0.82486 0.98264 1.22434 1.00524 0.95851 0.96270 1.22468 1.01545 0.95194 0.95501 1.22315 0.98512 0.96536 0.97847 1.22153 0.99509 0.98103 0.95020 0.89391 0.89279 0.92687 0.90945 0.89539 0.89906 0.89190 0.92234 0.89795 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.05 13.68 21.66 0.30 -39.76 15 2 C 0.03 1.40 5.50 84.97 0.47 1.87 15 3 Si 1.12 53.61 25.85 68.60 1.77 55.38 15 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 5 H -0.28 -13.73 6.75 99.48 0.67 -13.06 15 6 H -0.29 -14.44 7.11 99.48 0.71 -13.73 15 7 C -0.37 -18.42 10.40 83.97 0.87 -17.55 15 8 H 0.14 6.38 7.04 -2.91 -0.02 6.36 15 9 N -0.18 -9.44 3.69 -182.00 -0.67 -10.11 15 10 N -0.23 -12.83 8.72 37.02 0.32 -12.51 15 11 N -0.13 -6.94 13.38 37.02 0.50 -6.44 15 12 N -0.34 -16.87 11.94 -50.01 -0.60 -17.46 15 13 C 0.11 4.94 6.34 137.89 0.87 5.81 15 14 C 0.01 0.18 3.31 -10.82 -0.04 0.14 15 15 C -0.11 -3.27 6.36 31.70 0.20 -3.07 15 16 C -0.11 -2.31 6.91 31.91 0.22 -2.09 15 17 C -0.11 -2.62 6.83 31.67 0.22 -2.40 15 18 C -0.11 -3.21 6.45 31.32 0.20 -3.01 15 19 H 0.29 13.58 8.72 -92.71 -0.81 12.77 15 20 H 0.09 2.99 6.90 -2.39 -0.02 2.98 15 21 H 0.05 1.85 7.69 -2.39 -0.02 1.83 15 22 H 0.07 1.96 8.14 -2.38 -0.02 1.94 15 23 H 0.09 1.50 8.14 -2.39 -0.02 1.48 15 24 H 0.08 1.50 8.14 -2.39 -0.02 1.48 15 25 H 0.09 1.57 8.14 -2.39 -0.02 1.56 15 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 15 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 15 28 H 0.04 1.50 7.66 -2.38 -0.02 1.48 15 Total: -1.00 -60.01 237.17 5.72 -54.28 By element: Atomic # 1 Polarization: -4.17 SS G_CDS: 1.09 Total: -3.09 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 3.02 Total: -20.30 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -0.15 Total: -86.28 kcal Atomic # 14 Polarization: 53.61 SS G_CDS: 1.77 Total: 55.38 kcal Total: -60.01 5.72 -54.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259893503.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.589 kcal (2) G-P(sol) polarization free energy of solvation -60.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds