Wall clock time and date at job start Mon Mar 30 2020 02:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32009 * 119.56878 * 2 1 4 4 N 1.28746 * 121.35001 * 179.97438 * 3 2 1 5 5 C 1.32224 * 120.38970 * 0.02562 * 4 3 2 6 6 C 1.38711 * 119.12110 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.62948 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47414 * 205.00217 * 7 6 5 9 9 C 1.50700 * 109.47179 * 84.99565 * 7 6 5 10 10 H 1.07991 * 120.00481 * 294.80656 * 9 7 6 11 11 C 1.37880 * 119.99518 * 114.80560 * 9 7 6 12 12 N 1.31511 * 120.00060 * 184.62346 * 11 9 7 13 13 Si 1.86801 * 120.00181 * 4.62259 * 11 9 7 14 14 H 1.48496 * 109.46937 * 84.64050 * 13 11 9 15 15 H 1.48501 * 109.46985 * 204.63802 * 13 11 9 16 16 H 1.48501 * 109.47176 * 324.64161 * 13 11 9 17 17 C 1.53002 * 109.47114 * 325.00095 * 7 6 5 18 18 N 1.46905 * 109.47397 * 185.49061 * 17 7 6 19 19 N 1.32027 * 119.56406 * 179.73658 * 2 1 3 20 20 H 1.08999 * 109.47211 * 89.99390 * 1 2 3 21 21 H 1.08998 * 109.47360 * 209.99364 * 1 2 3 22 22 H 1.09004 * 109.46743 * 329.99637 * 1 2 3 23 23 H 1.07994 * 120.43775 * 179.97438 * 5 4 3 24 24 H 0.96998 * 120.00356 * 179.97438 * 12 11 9 25 25 H 1.09009 * 109.46929 * 305.48916 * 17 7 6 26 26 H 1.08999 * 109.47703 * 65.48714 * 17 7 6 27 27 H 1.00897 * 110.99722 * 61.10029 * 18 17 7 28 28 H 1.00896 * 110.99935 * 185.05736 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1584 1.1482 0.0000 4 7 3.4452 1.1882 0.0005 5 6 4.1492 0.0690 0.0005 6 6 3.4830 -1.1476 0.0005 7 6 4.2515 -2.4439 0.0000 8 1 3.6355 -3.2314 -0.4343 9 6 4.6148 -2.8131 1.4151 10 1 5.2936 -2.1901 1.9784 11 6 4.0805 -3.9464 1.9907 12 7 4.3247 -4.2201 3.2536 13 14 3.0097 -5.0929 0.9767 14 1 3.8718 -6.0427 0.2285 15 1 2.1043 -5.8505 1.8775 16 1 2.2019 -4.2970 0.0179 17 6 5.5277 -2.2798 -0.8279 18 7 6.2099 -3.5761 -0.9382 19 7 2.1584 -1.1484 0.0053 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3634 -0.8900 0.5137 22 1 -0.3633 0.8900 0.5139 23 1 5.2287 0.1016 0.0005 24 1 3.9485 -5.0172 3.6587 25 1 5.2708 -1.9185 -1.8238 26 1 6.1875 -1.5623 -0.3401 27 1 5.6252 -4.2540 -1.4036 28 1 7.0966 -3.4791 -1.4097 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259963780.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:51 Heat of formation + Delta-G solvation = 66.089999 kcal Electronic energy + Delta-G solvation = -13503.257501 eV Core-core repulsion = 11168.893066 eV Total energy + Delta-G solvation = -2334.364435 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.20056 -36.18025 -34.37178 -32.88365 -32.39548 -29.30060 -28.47718 -25.04348 -23.69909 -23.21212 -19.97512 -18.21894 -17.16672 -16.08866 -15.28863 -15.26097 -14.85308 -14.03342 -13.64813 -13.24266 -12.77342 -12.55105 -12.38854 -12.06042 -11.44469 -11.40379 -11.12621 -10.87662 -10.80803 -10.23046 -9.82898 -9.54497 -9.04261 -8.78621 -8.50753 -7.94239 -6.22918 -4.22525 1.22517 1.32794 3.27262 3.33527 3.37358 4.06338 4.21431 4.30229 4.34287 4.79616 5.03536 5.26729 5.38443 5.61209 5.66814 5.77747 5.79052 5.89893 6.12062 6.18926 6.36877 6.67072 6.80172 7.39679 7.66202 7.82761 8.02956 8.27470 8.78531 9.03130 9.37505 10.88271 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.028915 B = 0.012936 C = 0.010691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.114278 B = 2164.047419 C = 2618.450092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.251 3.749 3 N -0.319 5.319 4 N -0.201 5.201 5 C -0.024 4.024 6 C 0.199 3.801 7 C 0.048 3.952 8 H 0.068 0.932 9 C -0.482 4.482 10 H 0.078 0.922 11 C 0.086 3.914 12 N -0.884 5.884 13 Si 0.875 3.125 14 H -0.270 1.270 15 H -0.290 1.290 16 H -0.255 1.255 17 C 0.078 3.922 18 N -0.827 5.827 19 N -0.484 5.484 20 H 0.083 0.917 21 H 0.086 0.914 22 H 0.084 0.916 23 H 0.178 0.822 24 H 0.268 0.732 25 H 0.000 1.000 26 H 0.069 0.931 27 H 0.331 0.669 28 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 3.245 -8.817 9.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.019 4.019 3 N -0.167 5.167 4 N -0.047 5.047 5 C -0.194 4.194 6 C 0.044 3.956 7 C 0.027 3.973 8 H 0.086 0.914 9 C -0.520 4.520 10 H 0.096 0.904 11 C -0.119 4.119 12 N -0.519 5.519 13 Si 0.702 3.298 14 H -0.195 1.195 15 H -0.216 1.216 16 H -0.180 1.180 17 C -0.054 4.054 18 N -0.355 5.355 19 N -0.205 5.205 20 H 0.102 0.898 21 H 0.105 0.895 22 H 0.103 0.897 23 H 0.195 0.805 24 H 0.078 0.922 25 H 0.018 0.982 26 H 0.087 0.913 27 H 0.143 0.857 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.380 4.060 -7.843 9.456 hybrid contribution -0.065 -1.281 -1.206 1.761 sum -3.445 2.779 -9.049 10.073 Atomic orbital electron populations 1.20485 0.85592 1.04186 1.03588 1.24633 0.99562 0.86307 0.91368 1.73431 1.02110 1.25791 1.15346 1.73490 1.00253 1.26355 1.04611 1.24831 1.03550 0.91164 0.99872 1.23708 0.90063 0.98678 0.83158 1.18494 0.91264 0.88527 0.98969 0.91427 1.20468 1.27226 1.09606 0.94680 0.90424 1.25029 0.95078 0.97341 0.94483 1.69878 1.44107 1.26527 1.11416 0.86852 0.80868 0.81115 0.80924 1.19548 1.21640 1.17959 1.21882 0.96916 0.91238 0.95331 1.58313 1.07028 1.09510 1.60618 1.68837 1.09316 1.29250 1.13113 0.89802 0.89542 0.89677 0.80492 0.92233 0.98164 0.91261 0.85674 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.35 36.00 0.37 -0.73 15 2 C 0.25 4.84 7.71 -156.81 -1.21 3.63 15 3 N -0.32 -6.39 11.48 32.42 0.37 -6.02 15 4 N -0.20 -4.06 11.63 30.62 0.36 -3.71 15 5 C -0.02 -0.46 10.47 -17.21 -0.18 -0.64 15 6 C 0.20 4.27 5.80 -82.15 -0.48 3.79 15 7 C 0.05 1.06 2.29 -92.92 -0.21 0.85 15 8 H 0.07 1.54 4.52 -51.93 -0.23 1.30 15 9 C -0.48 -12.69 8.58 -34.44 -0.30 -12.99 15 10 H 0.08 2.24 8.06 -52.49 -0.42 1.82 15 11 C 0.09 2.36 5.47 -17.82 -0.10 2.27 15 12 N -0.88 -26.11 13.96 55.43 0.77 -25.34 15 13 Si 0.88 20.83 27.23 -169.99 -4.63 16.20 15 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 16 H -0.25 -5.93 6.40 56.52 0.36 -5.57 15 17 C 0.08 1.40 5.43 -3.82 -0.02 1.38 15 18 N -0.83 -14.27 9.33 -10.36 -0.10 -14.37 15 19 N -0.48 -10.50 10.39 -6.85 -0.07 -10.57 15 20 H 0.08 0.99 8.14 -51.93 -0.42 0.56 15 21 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 22 H 0.08 1.04 8.14 -51.93 -0.42 0.61 15 23 H 0.18 2.95 6.58 -52.49 -0.35 2.60 15 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 25 H 0.00 0.01 8.14 -51.92 -0.42 -0.42 15 26 H 0.07 1.20 6.89 -51.93 -0.36 0.85 15 27 H 0.33 5.43 9.05 -39.29 -0.36 5.08 15 28 H 0.33 4.57 9.08 -39.29 -0.36 4.21 15 LS Contribution 245.78 15.07 3.70 3.70 Total: -1.00 -31.34 245.78 -4.65 -35.99 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -2.94 Total: 6.56 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.12 Total: -2.45 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: 1.33 Total: -60.00 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.63 Total: 16.20 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.34 -4.65 -35.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963780.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.075 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds