Wall clock time and date at job start Mon Mar 30 2020 02:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32009 * 119.56878 * 2 1 4 4 N 1.28746 * 121.35001 * 179.97438 * 3 2 1 5 5 C 1.32224 * 120.38970 * 0.02562 * 4 3 2 6 6 C 1.38711 * 119.12110 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.62948 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47414 * 205.00217 * 7 6 5 9 9 C 1.50700 * 109.47179 * 84.99565 * 7 6 5 10 10 H 1.07991 * 120.00481 * 294.80656 * 9 7 6 11 11 C 1.37880 * 119.99518 * 114.80560 * 9 7 6 12 12 N 1.31511 * 120.00060 * 184.62346 * 11 9 7 13 13 Si 1.86801 * 120.00181 * 4.62259 * 11 9 7 14 14 H 1.48496 * 109.46937 * 84.64050 * 13 11 9 15 15 H 1.48501 * 109.46985 * 204.63802 * 13 11 9 16 16 H 1.48501 * 109.47176 * 324.64161 * 13 11 9 17 17 C 1.53002 * 109.47114 * 325.00095 * 7 6 5 18 18 N 1.46905 * 109.47397 * 185.49061 * 17 7 6 19 19 N 1.32027 * 119.56406 * 179.73658 * 2 1 3 20 20 H 1.08999 * 109.47211 * 89.99390 * 1 2 3 21 21 H 1.08998 * 109.47360 * 209.99364 * 1 2 3 22 22 H 1.09004 * 109.46743 * 329.99637 * 1 2 3 23 23 H 1.07994 * 120.43775 * 179.97438 * 5 4 3 24 24 H 0.96998 * 120.00356 * 179.97438 * 12 11 9 25 25 H 1.09009 * 109.46929 * 305.48916 * 17 7 6 26 26 H 1.08999 * 109.47703 * 65.48714 * 17 7 6 27 27 H 1.00897 * 110.99722 * 61.10029 * 18 17 7 28 28 H 1.00896 * 110.99935 * 185.05736 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1584 1.1482 0.0000 4 7 3.4452 1.1882 0.0005 5 6 4.1492 0.0690 0.0005 6 6 3.4830 -1.1476 0.0005 7 6 4.2515 -2.4439 0.0000 8 1 3.6355 -3.2314 -0.4343 9 6 4.6148 -2.8131 1.4151 10 1 5.2936 -2.1901 1.9784 11 6 4.0805 -3.9464 1.9907 12 7 4.3247 -4.2201 3.2536 13 14 3.0097 -5.0929 0.9767 14 1 3.8718 -6.0427 0.2285 15 1 2.1043 -5.8505 1.8775 16 1 2.2019 -4.2970 0.0179 17 6 5.5277 -2.2798 -0.8279 18 7 6.2099 -3.5761 -0.9382 19 7 2.1584 -1.1484 0.0053 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3634 -0.8900 0.5137 22 1 -0.3633 0.8900 0.5139 23 1 5.2287 0.1016 0.0005 24 1 3.9485 -5.0172 3.6587 25 1 5.2708 -1.9185 -1.8238 26 1 6.1875 -1.5623 -0.3401 27 1 5.6252 -4.2540 -1.4036 28 1 7.0966 -3.4791 -1.4097 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259963780.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:51 Heat of formation + Delta-G solvation = 41.187442 kcal Electronic energy + Delta-G solvation = -13504.337356 eV Core-core repulsion = 11168.893066 eV Total energy + Delta-G solvation = -2335.444290 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.77618 -37.80483 -35.91099 -34.39828 -34.30419 -30.93055 -29.85259 -26.86228 -25.30226 -24.69330 -21.63305 -19.87378 -19.07470 -17.61911 -16.88955 -16.76486 -16.52000 -15.54421 -15.17445 -14.98120 -14.39825 -13.93406 -13.70805 -13.44623 -13.02709 -13.00424 -12.80757 -12.67612 -12.43370 -11.94162 -11.73581 -11.26395 -10.77942 -10.69299 -10.18601 -9.27809 -8.30545 -6.34091 -0.37311 -0.23396 1.39054 1.42057 1.50242 2.37521 2.49282 2.73069 2.83294 3.08854 3.30349 3.76382 3.95262 4.29186 4.31052 4.37762 4.53559 4.64781 4.74825 4.78782 4.92182 5.17629 5.22887 5.49903 6.07167 6.19765 6.47836 6.69347 6.86786 7.30745 7.46216 8.84793 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.028915 B = 0.012936 C = 0.010691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.114278 B = 2164.047419 C = 2618.450092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.245 3.755 3 N -0.324 5.324 4 N -0.209 5.209 5 C -0.021 4.021 6 C 0.186 3.814 7 C 0.050 3.950 8 H 0.063 0.937 9 C -0.477 4.477 10 H 0.039 0.961 11 C 0.029 3.971 12 N -0.940 5.940 13 Si 0.933 3.067 14 H -0.252 1.252 15 H -0.298 1.298 16 H -0.245 1.245 17 C 0.085 3.915 18 N -0.844 5.844 19 N -0.505 5.505 20 H 0.111 0.889 21 H 0.090 0.910 22 H 0.104 0.896 23 H 0.203 0.797 24 H 0.266 0.734 25 H 0.029 0.971 26 H 0.073 0.927 27 H 0.337 0.663 28 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.505 3.662 -10.836 11.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.024 4.024 3 N -0.172 5.172 4 N -0.056 5.056 5 C -0.190 4.190 6 C 0.030 3.970 7 C 0.030 3.970 8 H 0.081 0.919 9 C -0.515 4.515 10 H 0.057 0.943 11 C -0.170 4.170 12 N -0.579 5.579 13 Si 0.758 3.242 14 H -0.177 1.177 15 H -0.225 1.225 16 H -0.169 1.169 17 C -0.047 4.047 18 N -0.375 5.375 19 N -0.227 5.227 20 H 0.129 0.871 21 H 0.109 0.891 22 H 0.122 0.878 23 H 0.220 0.780 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.150 0.850 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.141 4.494 -9.898 11.632 hybrid contribution 0.169 -1.254 -0.623 1.410 sum -3.971 3.241 -10.521 11.703 Atomic orbital electron populations 1.20715 0.81998 1.05322 1.05651 1.25529 1.01628 0.85244 0.89994 1.73424 1.02165 1.26348 1.15246 1.73468 1.00648 1.26655 1.04778 1.25131 1.04670 0.90205 0.99033 1.23650 0.90474 0.99013 0.83859 1.18449 0.93035 0.88699 0.96861 0.91949 1.20558 1.25957 1.08718 0.96268 0.94306 1.25816 0.96724 0.99193 0.95278 1.70022 1.46836 1.27583 1.13467 0.85941 0.79381 0.79410 0.79469 1.17668 1.22495 1.16946 1.21720 0.94994 0.91959 0.96020 1.58247 1.08253 1.09355 1.61687 1.68861 1.09634 1.30642 1.13559 0.87076 0.89136 0.87755 0.78046 0.92494 0.95283 0.90839 0.85023 0.83540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.94 10.35 71.23 0.74 -1.20 15 2 C 0.24 8.90 7.71 138.61 1.07 9.97 15 3 N -0.32 -12.33 11.48 -51.35 -0.59 -12.92 15 4 N -0.21 -8.08 11.63 -57.04 -0.66 -8.74 15 5 C -0.02 -0.77 10.47 84.75 0.89 0.12 15 6 C 0.19 7.70 5.80 42.58 0.25 7.94 15 7 C 0.05 2.14 2.29 -12.29 -0.03 2.11 15 8 H 0.06 2.71 4.52 -2.39 -0.01 2.70 15 9 C -0.48 -25.32 8.58 25.60 0.22 -25.11 15 10 H 0.04 2.31 8.06 -2.92 -0.02 2.29 15 11 C 0.03 1.62 5.47 84.66 0.46 2.08 15 12 N -0.94 -57.26 13.96 21.45 0.30 -56.96 15 13 Si 0.93 42.86 27.23 68.60 1.87 44.73 15 14 H -0.25 -10.75 7.11 99.48 0.71 -10.04 15 15 H -0.30 -13.95 7.11 99.48 0.71 -13.24 15 16 H -0.25 -10.75 6.40 99.48 0.64 -10.11 15 17 C 0.08 2.85 5.43 86.30 0.47 3.32 15 18 N -0.84 -27.28 9.33 -186.70 -1.74 -29.02 15 19 N -0.51 -21.03 10.39 -175.58 -1.82 -22.85 15 20 H 0.11 2.19 8.14 -2.39 -0.02 2.17 15 21 H 0.09 2.21 8.14 -2.39 -0.02 2.19 15 22 H 0.10 2.20 8.14 -2.38 -0.02 2.18 15 23 H 0.20 6.29 6.58 -2.91 -0.02 6.28 15 24 H 0.27 15.31 8.31 -92.71 -0.77 14.54 15 25 H 0.03 0.83 8.14 -2.38 -0.02 0.81 15 26 H 0.07 2.40 6.89 -2.39 -0.02 2.39 15 27 H 0.34 10.20 9.05 -89.70 -0.81 9.39 15 28 H 0.35 8.79 9.08 -89.70 -0.81 7.98 15 Total: -1.00 -67.93 245.78 0.92 -67.01 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.49 Total: 19.52 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 4.06 Total: -0.76 kcal Atomic # 7 Polarization: -125.99 SS G_CDS: -4.52 Total: -130.50 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.87 Total: 44.73 kcal Total: -67.93 0.92 -67.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963780.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.198 kcal (2) G-P(sol) polarization free energy of solvation -67.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds