Wall clock time and date at job start Mon Mar 30 2020 02:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32011 * 119.56206 * 2 1 4 4 N 1.28745 * 121.34643 * 179.97438 * 3 2 1 5 5 C 1.32225 * 120.39009 * 0.02562 * 4 3 2 6 6 C 1.38711 * 119.12058 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.62740 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47038 * 155.00179 * 7 6 5 9 9 C 1.50698 * 109.47091 * 275.00222 * 7 6 5 10 10 H 1.07994 * 120.00472 * 0.02562 * 9 7 6 11 11 C 1.37881 * 119.99692 * 180.02562 * 9 7 6 12 12 N 1.31516 * 119.99824 * 0.02562 * 11 9 7 13 13 Si 1.86802 * 119.99911 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47415 * 89.99734 * 13 11 9 15 15 H 1.48502 * 109.46743 * 210.00161 * 13 11 9 16 16 H 1.48497 * 109.46794 * 329.99586 * 13 11 9 17 17 C 1.53003 * 109.46898 * 35.00360 * 7 6 5 18 18 N 1.46899 * 109.47137 * 65.00057 * 17 7 6 19 19 N 1.32022 * 119.56297 * 179.72460 * 2 1 3 20 20 H 1.09001 * 109.46953 * 89.99918 * 1 2 3 21 21 H 1.09000 * 109.47318 * 209.99516 * 1 2 3 22 22 H 1.09000 * 109.47161 * 330.00146 * 1 2 3 23 23 H 1.07994 * 120.43667 * 179.97438 * 5 4 3 24 24 H 0.97008 * 119.99739 * 180.02562 * 12 11 9 25 25 H 1.09002 * 109.46959 * 184.99486 * 17 7 6 26 26 H 1.08992 * 109.47367 * 304.99622 * 17 7 6 27 27 H 1.00902 * 111.00339 * 56.03999 * 18 17 7 28 28 H 1.00900 * 111.00083 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1584 1.1483 0.0000 4 7 3.4452 1.1883 0.0005 5 6 4.1493 0.0692 0.0005 6 6 3.4830 -1.1475 0.0005 7 6 4.2517 -2.4437 0.0000 8 1 3.6361 -3.2314 0.4343 9 6 4.6139 -2.8123 -1.4157 10 1 4.3176 -2.1719 -2.2331 11 6 5.3237 -3.9673 -1.6671 12 7 5.6841 -4.7476 -0.6716 13 14 5.7733 -4.4239 -3.4218 14 1 7.0924 -3.8342 -3.7643 15 1 5.8446 -5.9020 -3.5458 16 1 4.7402 -3.8986 -4.3501 17 6 5.5285 -2.2798 0.8270 18 7 5.1742 -2.0387 2.2321 19 7 2.1584 -1.1483 0.0055 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5137 22 1 -0.3633 0.8900 0.5138 23 1 5.2287 0.1019 0.0005 24 1 6.1838 -5.5600 -0.8486 25 1 6.1276 -3.1875 0.7540 26 1 6.1018 -1.4345 0.4466 27 1 4.5878 -2.7781 2.5892 28 1 6.0011 -1.9274 2.7995 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259963790.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:53 Heat of formation + Delta-G solvation = 59.746107 kcal Electronic energy + Delta-G solvation = -13458.060412 eV Core-core repulsion = 11123.420885 eV Total energy + Delta-G solvation = -2334.639526 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.08819 -36.05615 -34.26998 -32.69926 -32.34446 -28.89903 -28.33386 -24.83195 -23.63890 -23.17053 -20.08502 -18.01653 -16.76952 -15.96989 -15.13216 -15.08927 -14.76365 -14.16183 -13.54752 -12.81223 -12.69794 -12.36813 -12.20895 -11.64231 -11.36140 -11.17860 -11.09711 -10.93221 -10.62285 -10.21464 -10.10505 -9.67468 -8.93220 -8.72757 -8.47062 -7.84463 -6.28903 -4.38716 1.37986 1.45537 3.16832 3.24280 3.28534 4.14609 4.28353 4.34018 4.46020 4.93597 5.02119 5.47401 5.53564 5.68701 5.73198 5.82563 5.96674 6.27226 6.45666 6.60432 6.87238 7.24910 7.33738 7.65948 7.75548 7.87150 8.07991 8.16374 8.62811 9.14066 9.27127 10.75456 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.033416 B = 0.010482 C = 0.009210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.723667 B = 2670.535802 C = 3039.586862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.244 3.756 3 N -0.318 5.318 4 N -0.207 5.207 5 C -0.003 4.003 6 C 0.222 3.778 7 C 0.093 3.907 8 H 0.057 0.943 9 C -0.514 4.514 10 H 0.059 0.941 11 C 0.069 3.931 12 N -0.885 5.885 13 Si 0.903 3.097 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.273 1.273 17 C 0.056 3.944 18 N -0.864 5.864 19 N -0.484 5.484 20 H 0.083 0.917 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.178 0.822 24 H 0.266 0.734 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.333 0.667 28 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.935 3.638 2.250 5.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.026 4.026 3 N -0.165 5.165 4 N -0.054 5.054 5 C -0.174 4.174 6 C 0.067 3.933 7 C 0.073 3.927 8 H 0.074 0.926 9 C -0.553 4.553 10 H 0.077 0.923 11 C -0.134 4.134 12 N -0.523 5.523 13 Si 0.730 3.270 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.197 1.197 17 C -0.074 4.074 18 N -0.392 5.392 19 N -0.206 5.206 20 H 0.102 0.898 21 H 0.103 0.897 22 H 0.101 0.899 23 H 0.195 0.805 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.144 0.856 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.821 5.069 2.009 6.658 hybrid contribution 1.373 -2.001 -0.744 2.539 sum -2.447 3.068 1.265 4.123 Atomic orbital electron populations 1.20458 0.85726 1.03839 1.03643 1.24596 0.99493 0.86433 0.92067 1.73399 1.02315 1.25898 1.14925 1.73500 1.00093 1.26529 1.05235 1.24833 1.03612 0.90973 0.97935 1.23342 0.89515 0.98656 0.81808 1.17976 0.91189 0.86647 0.96869 0.92555 1.20796 1.36428 1.07814 0.90273 0.92319 1.24917 0.95070 0.95536 0.97843 1.69843 1.38048 1.13533 1.30860 0.86403 0.78998 0.77752 0.83870 1.20282 1.20866 1.19729 1.22144 0.98757 1.01179 0.85335 1.59046 1.22791 1.52270 1.05062 1.68864 1.09546 1.29190 1.12961 0.89832 0.89692 0.89905 0.80492 0.92404 0.90285 0.93037 0.85564 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.35 36.01 0.37 -0.71 15 2 C 0.24 4.76 7.71 -156.81 -1.21 3.55 15 3 N -0.32 -6.54 11.48 32.42 0.37 -6.17 15 4 N -0.21 -4.37 11.63 30.62 0.36 -4.02 15 5 C 0.00 -0.07 10.46 -17.21 -0.18 -0.25 15 6 C 0.22 4.94 5.49 -82.15 -0.45 4.49 15 7 C 0.09 2.20 2.27 -92.92 -0.21 1.99 15 8 H 0.06 1.46 8.14 -51.93 -0.42 1.04 15 9 C -0.51 -13.21 8.55 -34.44 -0.29 -13.50 15 10 H 0.06 1.54 7.74 -52.49 -0.41 1.14 15 11 C 0.07 1.77 5.29 -17.82 -0.09 1.67 15 12 N -0.89 -22.97 11.30 55.43 0.63 -22.35 15 13 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 15 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 17 C 0.06 1.19 5.61 -3.82 -0.02 1.17 15 18 N -0.86 -15.70 9.34 -10.37 -0.10 -15.80 15 19 N -0.48 -10.60 10.39 -6.84 -0.07 -10.67 15 20 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 21 H 0.08 1.10 8.14 -51.93 -0.42 0.67 15 22 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.18 3.35 6.33 -52.49 -0.33 3.02 15 24 H 0.27 6.61 8.31 -40.82 -0.34 6.27 15 25 H 0.08 1.85 5.96 -51.93 -0.31 1.54 15 26 H 0.05 1.05 6.32 -51.93 -0.33 0.72 15 27 H 0.33 6.01 8.99 -39.29 -0.35 5.65 15 28 H 0.33 5.09 9.08 -39.29 -0.36 4.74 15 LS Contribution 246.02 15.07 3.71 3.71 Total: -1.00 -27.95 246.02 -5.13 -33.08 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -2.91 Total: 8.75 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.09 Total: -1.58 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 1.19 Total: -58.99 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.95 -5.13 -33.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963790.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.822 kcal (2) G-P(sol) polarization free energy of solvation -27.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds