Wall clock time and date at job start Mon Mar 30 2020 02:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 N 1.40083 * 126.10428 * 2 1 4 4 C 1.30861 * 108.41603 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.77371 * 180.02562 * 4 3 2 6 6 C 1.52993 * 117.50193 * 163.77178 * 5 4 3 7 7 C 1.52997 * 117.49877 * 95.10666 * 5 4 3 8 8 C 1.39675 * 108.45729 * 359.74382 * 4 3 2 9 9 C 1.35842 * 126.10226 * 180.02562 * 2 1 3 10 10 O 1.35543 * 126.26469 * 359.95955 * 9 2 1 11 11 C 1.34803 * 116.99871 * 185.61809 * 10 9 2 12 12 H 1.08003 * 119.99981 * 354.93037 * 11 10 9 13 13 C 1.38623 * 119.99847 * 174.64776 * 11 10 9 14 14 N 1.31569 * 120.00144 * 180.27778 * 13 11 10 15 15 Si 1.86798 * 119.99684 * 0.28032 * 13 11 10 16 16 H 1.48497 * 109.47493 * 90.00137 * 15 13 11 17 17 H 1.48503 * 109.46972 * 209.99593 * 15 13 11 18 18 H 1.48496 * 109.47285 * 329.99449 * 15 13 11 19 19 H 1.08995 * 109.47431 * 274.90168 * 1 2 3 20 20 H 1.09003 * 109.47102 * 34.90547 * 1 2 3 21 21 H 1.09000 * 109.47751 * 154.90116 * 1 2 3 22 22 H 1.09002 * 115.54724 * 309.43802 * 5 4 3 23 23 H 1.09005 * 117.49897 * 359.97438 * 6 5 4 24 24 H 1.09002 * 117.50059 * 145.02228 * 6 5 4 25 25 H 1.09003 * 117.50160 * 214.97628 * 7 5 4 26 26 H 1.08996 * 117.49887 * 359.97438 * 7 5 4 27 27 H 1.08001 * 126.06660 * 180.27755 * 8 4 3 28 28 H 0.97002 * 120.00307 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2903 1.1318 0.0000 4 6 3.5371 0.7342 -0.0006 5 6 4.7479 1.6314 -0.0002 6 6 6.0914 1.0049 0.3783 7 6 5.3877 1.9540 1.3516 8 6 3.5558 -0.6624 0.0050 9 6 2.2653 -1.0976 -0.0005 10 8 1.8547 -2.3893 -0.0003 11 6 2.8086 -3.3346 0.1167 12 1 3.8510 -3.0521 0.1224 13 6 2.4514 -4.6687 0.2357 14 7 3.3821 -5.5909 0.3554 15 14 0.6484 -5.1572 0.2259 16 1 0.2149 -5.4227 -1.1694 17 1 0.4632 -6.3830 1.0434 18 1 -0.1664 -4.0543 0.7960 19 1 -0.3634 0.0878 1.0238 20 1 -0.3633 0.8428 -0.5881 21 1 -0.3634 -0.9306 -0.4359 22 1 4.7535 2.4137 -0.7592 23 1 6.0994 -0.0563 0.6275 24 1 6.9809 1.3753 -0.1313 25 1 5.8147 2.9484 1.4819 26 1 4.9326 1.5176 2.2407 27 1 4.4373 -1.2865 0.0102 28 1 3.1322 -6.5245 0.4382 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966068.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:15 Heat of formation + Delta-G solvation = 57.708353 kcal Electronic energy + Delta-G solvation = -13269.096628 eV Core-core repulsion = 10902.075987 eV Total energy + Delta-G solvation = -2367.020641 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.19643 -39.33477 -37.83379 -34.51060 -33.71841 -30.23931 -27.88907 -27.19650 -24.05628 -23.24303 -21.78748 -20.82932 -19.43965 -18.88330 -16.96384 -16.84264 -16.38525 -15.46570 -15.39616 -15.19433 -14.86851 -14.57893 -13.91361 -13.47280 -13.30221 -12.90834 -12.78211 -12.32900 -12.15765 -11.95080 -11.68699 -11.44282 -11.07274 -10.94174 -9.75019 -9.24163 -8.53523 -6.32967 0.96428 1.21981 1.34394 1.35985 1.51629 1.82687 2.23905 2.84292 2.94613 3.05686 3.57439 3.99030 4.04566 4.14622 4.36818 4.40662 4.60690 4.70785 4.76973 4.82759 4.91577 5.09880 5.25029 5.33160 5.51068 5.65972 5.84841 6.17161 6.69143 6.82450 7.44561 8.58187 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.036643 B = 0.009776 C = 0.007910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.938132 B = 2863.563092 C = 3538.864133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.393 5.393 3 N -0.318 5.318 4 C 0.127 3.873 5 C -0.095 4.095 6 C -0.162 4.162 7 C -0.151 4.151 8 C -0.371 4.371 9 C 0.282 3.718 10 O -0.232 6.232 11 C -0.391 4.391 12 H 0.076 0.924 13 C 0.017 3.983 14 N -0.918 5.918 15 Si 0.971 3.029 16 H -0.263 1.263 17 H -0.265 1.265 18 H -0.260 1.260 19 H 0.081 0.919 20 H 0.108 0.892 21 H 0.085 0.915 22 H 0.137 0.863 23 H 0.078 0.922 24 H 0.129 0.871 25 H 0.131 0.869 26 H 0.078 0.922 27 H 0.129 0.871 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 11.339 0.097 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.188 5.188 3 N -0.144 5.144 4 C -0.038 4.038 5 C -0.114 4.114 6 C -0.199 4.199 7 C -0.189 4.189 8 C -0.401 4.401 9 C 0.111 3.889 10 O -0.132 6.132 11 C -0.469 4.469 12 H 0.094 0.906 13 C -0.182 4.182 14 N -0.558 5.558 15 Si 0.792 3.208 16 H -0.188 1.188 17 H -0.190 1.190 18 H -0.184 1.184 19 H 0.099 0.901 20 H 0.126 0.874 21 H 0.104 0.896 22 H 0.154 0.846 23 H 0.097 0.903 24 H 0.147 0.853 25 H 0.149 0.851 26 H 0.096 0.904 27 H 0.147 0.853 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.873 11.901 0.099 12.244 hybrid contribution 0.116 -1.526 -0.002 1.530 sum -2.757 10.375 0.097 10.736 Atomic orbital electron populations 1.21999 0.72543 1.04966 1.04251 1.48557 1.07150 1.00440 1.62658 1.77151 1.01068 1.05101 1.31059 1.21432 0.93133 0.92283 0.96954 1.20298 0.88527 1.00617 1.01993 1.23078 0.94745 0.98977 1.03091 1.23046 1.02176 1.01851 0.91852 1.20755 0.95490 0.95354 1.28535 1.19563 0.90318 0.82294 0.96720 1.83162 1.36557 1.09518 1.83992 1.20466 0.87325 0.85580 1.53484 0.90645 1.25208 1.04401 0.93561 0.95051 1.69715 1.35188 1.02038 1.48877 0.85224 0.77766 0.78408 0.79364 1.18768 1.19001 1.18417 0.90057 0.87375 0.89644 0.84551 0.90333 0.85298 0.85111 0.90362 0.85270 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.16 11.46 127.77 1.46 4.62 15 2 N -0.39 -16.55 4.04 -480.40 -1.94 -18.50 15 3 N -0.32 -13.12 12.57 -47.49 -0.60 -13.71 15 4 C 0.13 5.14 6.84 43.05 0.29 5.43 15 5 C -0.09 -2.82 6.33 -11.54 -0.07 -2.89 15 6 C -0.16 -4.21 10.02 30.62 0.31 -3.90 15 7 C -0.15 -3.74 10.24 30.62 0.31 -3.43 15 8 C -0.37 -17.57 9.16 22.14 0.20 -17.36 15 9 C 0.28 13.94 7.71 83.60 0.64 14.58 15 10 O -0.23 -12.50 8.53 -20.19 -0.17 -12.67 15 11 C -0.39 -22.98 10.07 67.91 0.68 -22.29 15 12 H 0.08 4.73 6.19 -2.91 -0.02 4.71 15 13 C 0.02 0.97 5.49 84.82 0.47 1.44 15 14 N -0.92 -53.88 13.96 21.61 0.30 -53.58 15 15 Si 0.97 43.65 28.61 68.60 1.96 45.61 15 16 H -0.26 -11.32 7.11 99.48 0.71 -10.61 15 17 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 18 H -0.26 -11.46 7.11 99.48 0.71 -10.75 15 19 H 0.08 2.22 8.14 -2.39 -0.02 2.20 15 20 H 0.11 2.66 8.14 -2.39 -0.02 2.65 15 21 H 0.08 2.59 8.06 -2.39 -0.02 2.57 15 22 H 0.14 3.44 8.14 -2.39 -0.02 3.42 15 23 H 0.08 2.44 7.13 -2.38 -0.02 2.42 15 24 H 0.13 2.51 8.14 -2.39 -0.02 2.49 15 25 H 0.13 2.31 8.14 -2.39 -0.02 2.29 15 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 15 27 H 0.13 6.37 6.04 -2.91 -0.02 6.35 15 28 H 0.29 15.39 8.31 -92.71 -0.77 14.62 15 Total: -1.00 -67.58 250.93 5.02 -62.56 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 1.16 Total: 14.08 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 4.30 Total: -23.80 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -2.24 Total: -85.79 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.17 Total: -12.67 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.96 Total: 45.61 kcal Total: -67.58 5.02 -62.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966068.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.272 kcal (2) G-P(sol) polarization free energy of solvation -67.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds