Wall clock time and date at job start Mon Mar 30 2020 02:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99755 * 2 1 4 4 H 1.48499 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46974 * 299.99515 * 3 2 1 6 6 H 1.48490 * 109.47674 * 59.99844 * 3 2 1 7 7 C 1.37874 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00027 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47075 * 179.97438 * 9 7 2 11 11 N 1.31063 * 126.66406 * 270.17550 * 10 9 7 12 12 N 1.28838 * 107.99209 * 180.24353 * 11 10 9 13 13 N 1.28734 * 109.39911 * 359.75395 * 12 11 10 14 14 N 1.29019 * 108.80481 * 359.97438 * 13 12 11 15 15 C 1.46505 * 126.43541 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47212 * 90.02655 * 15 14 13 17 17 C 1.53000 * 117.50165 * 243.62151 * 16 15 14 18 18 C 1.52994 * 59.99907 * 252.50793 * 17 16 15 19 19 H 0.96996 * 120.00068 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46738 * 60.00229 * 9 7 2 21 21 H 1.08996 * 109.46945 * 299.99940 * 9 7 2 22 22 H 1.09002 * 109.47068 * 210.02715 * 15 14 13 23 23 H 1.09001 * 109.47372 * 330.02803 * 15 14 13 24 24 H 1.09003 * 115.54795 * 29.32516 * 16 15 14 25 25 H 1.09001 * 117.49810 * 359.97438 * 17 16 15 26 26 H 1.08995 * 117.50134 * 145.01745 * 17 16 15 27 27 H 1.09004 * 117.49933 * 252.50827 * 18 17 16 28 28 H 1.09002 * 117.49788 * 107.49222 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2304 -3.6445 0.0015 11 7 2.7406 -4.2377 -1.0500 12 7 3.5292 -5.1694 -0.6377 13 7 3.5393 -5.1826 0.6495 14 7 2.7538 -4.2546 1.0811 15 6 2.4777 -3.9305 2.4829 16 6 3.4826 -2.8857 2.9722 17 6 4.4375 -3.2954 4.0953 18 6 3.2894 -2.3260 4.3830 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5574 -0.8880 21 1 0.6248 -2.5563 0.8919 22 1 1.4670 -3.5320 2.5714 23 1 2.5671 -4.8322 3.0887 24 1 3.8641 -2.2070 2.2094 25 1 4.3495 -4.3093 4.4858 26 1 5.4475 -2.8865 4.0714 27 1 3.5441 -1.2791 4.5484 28 1 2.4463 -2.7022 4.9626 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259974028.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:03 Heat of formation + Delta-G solvation = 109.256152 kcal Electronic energy + Delta-G solvation = -13467.104481 eV Core-core repulsion = 11134.611872 eV Total energy + Delta-G solvation = -2332.492610 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.03905 -38.77875 -36.05259 -35.64255 -33.76766 -30.41845 -29.09628 -25.87860 -24.31810 -23.29771 -22.96897 -21.65145 -18.78299 -18.55724 -17.67428 -16.81238 -16.15425 -15.39920 -15.31262 -14.99889 -14.43115 -13.78073 -13.53380 -13.19560 -13.08674 -12.82895 -12.64497 -12.35698 -12.21918 -11.97472 -11.90233 -11.73317 -11.30224 -11.00149 -10.71198 -10.65747 -8.29070 -6.40460 0.35868 1.19241 1.30502 1.39203 1.44058 1.53570 2.37930 2.82826 3.05416 3.41111 3.46171 3.61552 3.93236 3.96436 4.09803 4.28890 4.46509 4.59895 4.79164 4.89137 5.00941 5.09700 5.16130 5.22975 5.26365 5.46404 5.62002 5.94680 6.63533 7.28091 7.69309 8.81755 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.024283 B = 0.012557 C = 0.009407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.775776 B = 2229.213796 C = 2975.725007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.044 0.956 9 C 0.105 3.895 10 C 0.227 3.773 11 N -0.352 5.352 12 N -0.114 5.114 13 N -0.111 5.111 14 N -0.299 5.299 15 C 0.146 3.854 16 C -0.198 4.198 17 C -0.162 4.162 18 C -0.146 4.146 19 H 0.271 0.729 20 H 0.039 0.961 21 H 0.054 0.946 22 H 0.122 0.878 23 H 0.136 0.864 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.297 -3.106 11.337 12.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.173 4.173 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.063 0.937 9 C 0.065 3.935 10 C -0.051 4.051 11 N -0.202 5.202 12 N -0.108 5.108 13 N -0.097 5.097 14 N -0.101 5.101 15 C 0.027 3.973 16 C -0.217 4.217 17 C -0.199 4.199 18 C -0.183 4.183 19 H 0.080 0.920 20 H 0.057 0.943 21 H 0.072 0.928 22 H 0.140 0.860 23 H 0.154 0.846 24 H 0.099 0.901 25 H 0.136 0.864 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.962 -3.991 10.692 12.081 hybrid contribution -0.133 1.525 0.030 1.531 sum 3.829 -2.466 10.722 11.649 Atomic orbital electron populations 1.69995 1.07096 1.28434 1.49693 1.25579 0.95623 1.02118 0.93948 0.85494 0.78521 0.79320 0.78313 1.20043 1.20432 1.19237 1.20897 0.92430 0.90203 1.53122 0.93725 1.17813 0.90304 0.85743 0.99673 1.26938 0.98625 0.97614 0.81905 1.74916 1.11570 1.07533 1.26156 1.78382 1.15631 1.15175 1.01635 1.78540 1.12767 1.10635 1.07796 1.48660 1.28611 1.21652 1.11131 1.22075 1.01244 1.00744 0.73281 1.22362 1.03273 1.02004 0.94076 1.23213 0.95535 1.01366 0.99778 1.23064 1.01121 0.99919 0.94230 0.91958 0.94324 0.92772 0.85969 0.84596 0.90132 0.86427 0.88645 0.88275 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.13 13.29 21.45 0.28 -48.85 15 2 C 0.03 1.46 5.46 84.65 0.46 1.93 15 3 Si 0.96 41.21 29.54 68.60 2.03 43.23 15 4 H -0.28 -11.90 7.11 99.48 0.71 -11.20 15 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 15 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 15 7 C -0.53 -27.51 9.09 25.60 0.23 -27.27 15 8 H 0.04 2.41 7.74 -2.91 -0.02 2.39 15 9 C 0.10 5.05 5.31 29.10 0.15 5.21 15 10 C 0.23 10.24 7.32 138.14 1.01 11.25 15 11 N -0.35 -17.15 12.36 -50.46 -0.62 -17.78 15 12 N -0.11 -5.25 13.43 37.01 0.50 -4.76 15 13 N -0.11 -4.51 13.29 37.02 0.49 -4.02 15 14 N -0.30 -11.39 3.35 -338.26 -1.13 -12.52 15 15 C 0.15 4.02 6.50 86.38 0.56 4.58 15 16 C -0.20 -5.46 6.01 -10.80 -0.06 -5.52 15 17 C -0.16 -3.29 10.18 30.59 0.31 -2.98 15 18 C -0.15 -2.97 10.25 30.59 0.31 -2.66 15 19 H 0.27 13.68 8.31 -92.71 -0.77 12.91 15 20 H 0.04 2.03 8.14 -2.39 -0.02 2.01 15 21 H 0.05 2.49 7.17 -2.39 -0.02 2.47 15 22 H 0.12 3.18 7.13 -2.39 -0.02 3.16 15 23 H 0.14 2.75 7.88 -2.39 -0.02 2.73 15 24 H 0.08 2.90 8.14 -2.39 -0.02 2.88 15 25 H 0.12 1.89 8.03 -2.39 -0.02 1.88 15 26 H 0.10 1.92 8.14 -2.39 -0.02 1.90 15 27 H 0.10 2.05 8.14 -2.38 -0.02 2.03 15 28 H 0.12 1.91 8.14 -2.39 -0.02 1.89 15 Total: -1.00 -62.14 253.66 5.69 -56.45 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.16 Total: 3.70 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 2.98 Total: -15.47 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -0.48 Total: -87.92 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -62.14 5.69 -56.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974028.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.708 kcal (2) G-P(sol) polarization free energy of solvation -62.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds